Wall clock time and date at job start Mon Mar 30 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.23292 * 2 1 4 4 C 1.53138 * 109.23337 * 119.42228 * 2 1 3 5 5 C 1.51490 * 108.38265 * 36.16865 * 4 2 1 6 6 O 1.21281 * 120.05264 * 250.03860 * 5 4 2 7 7 N 1.33630 * 119.90132 * 70.01201 * 5 4 2 8 8 C 1.46497 * 119.95225 * 180.25079 * 7 5 4 9 9 C 1.52999 * 109.46911 * 272.97453 * 8 7 5 10 10 C 1.50697 * 115.54642 * 91.01213 * 9 8 7 11 11 H 1.08011 * 119.99536 * 219.61579 * 10 9 8 12 12 C 1.37873 * 120.00515 * 39.61594 * 10 9 8 13 13 N 1.31517 * 119.99931 * 17.41220 * 12 10 9 14 14 Si 1.86803 * 120.00170 * 197.41374 * 12 10 9 15 15 H 1.48508 * 109.47085 * 94.99443 * 14 12 10 16 16 H 1.48498 * 109.47513 * 214.99361 * 14 12 10 17 17 H 1.48499 * 109.47210 * 334.99874 * 14 12 10 18 18 C 1.52998 * 117.50077 * 305.33485 * 9 8 7 19 19 C 1.53002 * 60.03270 * 252.50140 * 18 9 8 20 20 C 1.47265 * 120.09504 * 0.52507 * 7 5 4 21 21 C 1.53607 * 108.26800 * 289.07679 * 20 7 5 22 22 N 1.45558 * 110.78237 * 85.87756 * 21 20 7 23 23 H 1.08999 * 109.46677 * 298.28717 * 1 2 3 24 24 H 1.08999 * 109.46581 * 58.27901 * 1 2 3 25 25 H 1.08992 * 109.47372 * 178.28161 * 1 2 3 26 26 H 1.09001 * 109.47114 * 179.42251 * 3 2 1 27 27 H 1.09001 * 109.46590 * 299.42069 * 3 2 1 28 28 H 1.08998 * 109.47528 * 59.41859 * 3 2 1 29 29 H 1.09003 * 109.68096 * 276.45073 * 4 2 1 30 30 H 1.09004 * 109.68929 * 155.89498 * 4 2 1 31 31 H 1.09003 * 109.46884 * 152.97512 * 8 7 5 32 32 H 1.09000 * 109.47162 * 32.98035 * 8 7 5 33 33 H 0.97001 * 119.99607 * 184.95994 * 13 12 10 34 34 H 1.09002 * 117.49736 * 0.02562 * 18 9 8 35 35 H 1.08998 * 117.49495 * 144.99556 * 18 9 8 36 36 H 1.08994 * 117.49733 * 107.50316 * 19 18 9 37 37 H 1.08998 * 117.49396 * 252.52299 * 19 18 9 38 38 H 1.08999 * 109.62189 * 48.77226 * 20 7 5 39 39 H 1.09000 * 109.61675 * 169.33101 * 20 7 5 40 40 H 1.08991 * 109.30245 * 325.50424 * 21 20 7 41 41 H 1.09002 * 109.13247 * 206.14168 * 21 20 7 42 42 H 1.00900 * 111.00327 * 163.54006 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0340 1.4446 0.0000 4 6 2.0345 -0.7103 1.2594 5 6 1.0961 -1.8587 1.5685 6 8 0.3682 -1.8044 2.5371 7 7 1.0711 -2.9314 0.7721 8 6 0.1601 -4.0402 1.0669 9 6 0.8364 -5.0119 2.0360 10 6 0.5970 -4.7423 3.4993 11 1 1.4016 -4.8643 4.2095 12 6 -0.6489 -4.3399 3.9314 13 7 -1.7003 -4.5151 3.1610 14 14 -0.8435 -3.5459 5.6110 15 1 -0.8069 -2.0683 5.4673 16 1 -2.1427 -3.9535 6.2038 17 1 0.2643 -3.9846 6.4973 18 6 2.2019 -5.5737 1.6353 19 6 0.9646 -6.4730 1.5979 20 6 1.9623 -3.0032 -0.3981 21 6 1.4611 -1.9995 -1.4473 22 7 2.0096 -0.6745 -1.1978 23 1 -0.3633 0.4870 0.9050 24 1 -0.3632 0.5403 -0.8742 25 1 -0.3634 -1.0271 -0.0308 26 1 3.1240 1.4492 0.0104 27 1 1.6770 1.9539 -0.8952 28 1 1.6601 1.9599 0.8847 29 1 2.0465 -0.0109 2.0954 30 1 3.0400 -1.0941 1.0867 31 1 -0.0877 -4.5623 0.1426 32 1 -0.7516 -3.6507 1.5198 33 1 -2.5642 -4.1679 3.4332 34 1 2.6187 -5.2507 0.6813 35 1 2.9271 -5.7482 2.4300 36 1 0.5673 -6.7419 0.6192 37 1 0.8758 -7.2389 2.3683 38 1 2.9791 -2.7476 -0.1001 39 1 1.9418 -4.0112 -0.8124 40 1 0.3731 -1.9503 -1.4080 41 1 1.7693 -2.3343 -2.4378 42 1 1.9109 -0.0835 -2.0097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711675729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:23 Heat of formation + Delta-G solvation = -16.003087 kcal Electronic energy + Delta-G solvation = -22374.690037 eV Core-core repulsion = 19355.011073 eV Total energy + Delta-G solvation = -3019.678963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52757 -38.79372 -38.03970 -35.83514 -34.13109 -33.08186 -30.13471 -28.54720 -28.29270 -27.58256 -26.42240 -23.84477 -22.87332 -21.27094 -20.46265 -19.46594 -18.17703 -17.64721 -17.38242 -16.61407 -16.43201 -16.14160 -15.98778 -15.51072 -14.83869 -14.52958 -14.31605 -14.08507 -13.66389 -13.44826 -13.20172 -13.06595 -12.93667 -12.83978 -12.73978 -12.65062 -12.48673 -12.28228 -12.08540 -12.07000 -11.92638 -11.80250 -11.43462 -10.95176 -10.56657 -10.29242 -9.90125 -9.40173 -9.13532 -8.13938 -6.07955 1.30521 1.40710 1.44891 2.06937 2.40070 2.46658 3.12123 3.13993 3.65201 3.72891 3.83822 4.08731 4.14361 4.24344 4.35733 4.40162 4.43846 4.52216 4.62995 4.68889 4.69912 4.79956 4.83830 4.88692 4.91377 4.96847 4.99924 5.07000 5.15073 5.19754 5.25244 5.39161 5.41136 5.57173 5.64288 5.99360 6.00090 6.22782 6.42781 6.64446 6.80632 6.95399 7.53110 7.68972 8.92998 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.008288 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.405674 B = 3377.423789 C = 4204.867087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.139 3.861 3 C -0.133 4.133 4 C -0.122 4.122 5 C 0.499 3.501 6 O -0.578 6.578 7 N -0.598 5.598 8 C 0.155 3.845 9 C 0.013 3.987 10 C -0.496 4.496 11 H 0.031 0.969 12 C 0.064 3.936 13 N -0.891 5.891 14 Si 0.921 3.079 15 H -0.289 1.289 16 H -0.283 1.283 17 H -0.275 1.275 18 C -0.180 4.180 19 C -0.198 4.198 20 C 0.106 3.894 21 C 0.054 3.946 22 N -0.690 5.690 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.023 0.977 41 H 0.114 0.886 42 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 9.311 -13.981 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.048 3.952 3 C -0.190 4.190 4 C -0.162 4.162 5 C 0.287 3.713 6 O -0.457 6.457 7 N -0.330 5.330 8 C 0.033 3.967 9 C 0.012 3.988 10 C -0.532 4.532 11 H 0.049 0.951 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.749 3.251 15 H -0.216 1.216 16 H -0.209 1.209 17 H -0.200 1.200 18 C -0.217 4.217 19 C -0.236 4.236 20 C -0.017 4.017 21 C -0.076 4.076 22 N -0.325 5.325 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.041 0.959 41 H 0.132 0.868 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.278 9.041 -13.133 17.965 hybrid contribution -1.367 0.243 1.185 1.825 sum 6.911 9.284 -11.948 16.634 Atomic orbital electron populations 1.22629 0.98425 1.01128 1.01987 1.20306 0.91074 0.94847 0.89020 1.21838 1.02524 0.91814 1.02830 1.22171 0.99416 0.95241 0.99420 1.21018 0.84044 0.84307 0.81886 1.90748 1.44399 1.81025 1.29538 1.48022 1.39978 1.17503 1.27470 1.20924 0.93623 0.86845 0.95331 1.19364 0.94762 0.90841 0.93864 1.20518 0.94658 1.46175 0.91863 0.95079 1.25039 0.95218 0.94406 0.98995 1.70008 0.99255 1.43854 1.39779 0.86138 0.77046 0.79454 0.82483 1.21581 1.20912 1.19988 1.22804 0.91097 1.06381 1.01421 1.22977 1.03632 0.96440 1.00571 1.22248 0.93869 1.00451 0.85112 1.22150 0.96971 0.88848 0.99608 1.58046 1.64381 1.04295 1.05736 0.93887 0.90739 0.94432 0.90470 0.90582 0.92226 0.89382 0.87735 0.92733 0.90042 0.93546 0.88231 0.91818 0.89742 0.92085 0.89697 0.88702 0.95902 0.86813 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.16 7.26 71.98 0.52 -4.63 16 2 C 0.14 3.24 0.96 3.82 0.00 3.24 16 3 C -0.13 -2.25 8.42 71.98 0.61 -1.64 16 4 C -0.12 -3.72 4.86 30.15 0.15 -3.57 16 5 C 0.50 20.98 4.83 88.09 0.43 21.40 16 6 O -0.58 -31.28 15.43 -3.03 -0.05 -31.33 16 7 N -0.60 -22.98 2.00 -819.31 -1.64 -24.62 16 8 C 0.16 7.25 5.09 86.38 0.44 7.69 16 9 C 0.01 0.65 1.94 -52.90 -0.10 0.55 16 10 C -0.50 -29.16 8.44 25.60 0.22 -28.95 16 11 H 0.03 1.90 7.88 -2.91 -0.02 1.87 16 12 C 0.06 3.83 4.31 84.65 0.36 4.20 16 13 N -0.89 -53.60 11.24 21.45 0.24 -53.36 16 14 Si 0.92 49.33 29.58 68.60 2.03 51.36 16 15 H -0.29 -16.18 7.11 99.48 0.71 -15.47 16 16 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 17 H -0.27 -14.34 7.11 99.48 0.71 -13.63 16 18 C -0.18 -7.48 9.62 30.59 0.29 -7.19 16 19 C -0.20 -8.86 9.89 30.62 0.30 -8.55 16 20 C 0.11 2.81 4.95 86.44 0.43 3.24 16 21 C 0.05 1.13 6.05 86.76 0.52 1.66 16 22 N -0.69 -12.87 5.89 -474.61 -2.80 -15.67 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.30 4.90 -2.39 -0.01 1.29 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 0.99 8.11 -2.39 -0.02 0.97 16 28 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.09 2.73 7.90 -2.39 -0.02 2.71 16 30 H 0.10 2.87 7.06 -2.39 -0.02 2.85 16 31 H 0.05 2.30 7.71 -2.39 -0.02 2.28 16 32 H 0.08 4.60 4.86 -2.39 -0.01 4.59 16 33 H 0.26 14.96 8.32 -92.71 -0.77 14.19 16 34 H 0.10 3.43 6.23 -2.39 -0.01 3.42 16 35 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 37 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.08 2.13 7.01 -2.39 -0.02 2.12 16 39 H 0.09 2.29 6.98 -2.39 -0.02 2.28 16 40 H 0.02 0.59 6.05 -2.39 -0.01 0.57 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.36 4.90 8.57 -89.69 -0.77 4.13 16 Total: -1.00 -72.26 318.65 2.20 -70.06 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.24 Total: 16.12 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.17 Total: -12.56 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.20 Total: -93.65 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -72.26 2.20 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711675729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.059 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds