Wall clock time and date at job start Mon Mar 30 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99960 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00377 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99618 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47018 * 179.97438 * 13 11 10 15 15 C 1.46895 * 111.00061 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47117 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.43363 * 54.30005 * 17 16 15 19 19 C 1.54898 * 110.48777 * 291.76006 * 17 16 15 20 20 C 1.54883 * 102.74842 * 203.37902 * 19 17 16 21 21 C 1.54264 * 104.19871 * 37.94460 * 20 19 17 22 22 H 1.08997 * 117.41305 * 196.41607 * 21 20 19 23 23 C 1.53000 * 118.19771 * 41.77760 * 21 20 19 24 24 C 1.54088 * 106.62073 * 336.27709 * 21 20 19 25 25 H 1.09002 * 121.47090 * 222.09195 * 24 21 20 26 26 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 28 28 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 29 29 H 0.97000 * 119.99261 * 0.02562 * 10 9 7 30 30 H 1.09001 * 109.47250 * 299.99546 * 13 11 10 31 31 H 1.08994 * 109.47456 * 60.00102 * 13 11 10 32 32 H 1.00897 * 110.99992 * 56.04239 * 14 13 11 33 33 H 1.09004 * 109.47349 * 300.00276 * 15 14 13 34 34 H 1.08998 * 109.46888 * 59.99909 * 15 14 13 35 35 H 1.08991 * 109.47753 * 300.00314 * 16 15 14 36 36 H 1.09006 * 109.46863 * 60.00635 * 16 15 14 37 37 H 1.09001 * 110.75119 * 321.69532 * 19 17 16 38 38 H 1.09003 * 110.75201 * 84.87655 * 19 17 16 39 39 H 1.09004 * 110.48570 * 156.62403 * 20 19 17 40 40 H 1.09006 * 110.48511 * 279.12717 * 20 19 17 41 41 H 1.08994 * 117.45992 * 13.98366 * 23 21 20 42 42 H 1.08998 * 117.45823 * 158.79297 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7333 -6.0287 -0.0005 14 7 1.9988 -7.3010 -0.0006 15 6 2.9233 -8.4425 -0.0006 16 6 2.1232 -9.7467 -0.0001 17 6 3.0861 -10.9357 0.0005 18 1 3.7887 -10.8560 0.8299 19 6 3.8454 -11.0191 -1.3471 20 6 4.2579 -12.5104 -1.4152 21 6 3.0495 -13.2647 -0.8232 22 1 3.2056 -14.2980 -0.5134 23 6 1.6452 -12.8066 -1.2221 24 6 2.3046 -12.2634 0.0805 25 1 1.9137 -12.5575 1.0546 26 1 -0.4849 -0.8401 -0.0004 27 1 0.6247 -2.5571 0.8896 28 1 0.6242 -2.5567 -0.8904 29 1 3.1568 -3.4353 -0.0002 30 1 3.3606 -5.9709 -0.8900 31 1 3.3592 -5.9711 0.8899 32 1 1.3627 -7.3512 -0.7822 33 1 3.5513 -8.4015 -0.8906 34 1 3.5512 -8.4015 0.8893 35 1 1.4955 -9.7876 0.8899 36 1 1.4950 -9.7879 -0.8900 37 1 3.1879 -10.7618 -2.1774 38 1 4.7230 -10.3727 -1.3365 39 1 4.4272 -12.8126 -2.4488 40 1 5.1513 -12.6869 -0.8160 41 1 1.5596 -12.1324 -2.0742 42 1 0.8312 -13.5220 -1.1057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717072527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:21 Heat of formation + Delta-G solvation = -34.395253 kcal Electronic energy + Delta-G solvation = -19314.147840 eV Core-core repulsion = 16293.671332 eV Total energy + Delta-G solvation = -3020.476508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05843 -38.94541 -36.17946 -34.37726 -32.73799 -32.37204 -30.65621 -28.24690 -26.49468 -24.55367 -23.90941 -22.47854 -21.96952 -19.92860 -19.79039 -19.23447 -17.50652 -16.83309 -16.27859 -15.94463 -15.35678 -14.77384 -14.62879 -14.33161 -13.94597 -13.73196 -13.45147 -13.12834 -12.81756 -12.66613 -12.47331 -12.22393 -12.16695 -11.62811 -11.48560 -11.40883 -11.20042 -11.02424 -10.96665 -10.77237 -10.71055 -10.30014 -10.18378 -9.81364 -9.19380 -8.78690 -8.68379 -8.39675 -7.99035 -6.51987 -4.25504 3.29434 3.33848 3.37008 3.40584 3.56076 3.75459 4.09293 4.29335 4.38809 4.47357 4.57208 4.71724 4.80220 4.96170 5.03289 5.15459 5.23321 5.26810 5.30338 5.33020 5.39318 5.43012 5.46324 5.49733 5.56594 5.60589 5.67752 5.78885 5.85108 5.90289 5.91329 6.11778 6.16494 6.87501 7.03601 7.22385 7.32426 7.37524 7.66475 8.26850 8.47191 8.71506 8.99749 9.48490 10.88262 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.060566 B = 0.002420 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.196126 B =11567.621525 C =11839.201797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.240 3.760 10 N -0.710 5.710 11 C 0.496 3.504 12 O -0.545 6.545 13 C 0.041 3.959 14 N -0.674 5.674 15 C 0.059 3.941 16 C -0.107 4.107 17 C -0.060 4.060 18 H 0.081 0.919 19 C -0.127 4.127 20 C -0.097 4.097 21 C -0.169 4.169 22 H 0.105 0.895 23 C -0.153 4.153 24 C -0.161 4.161 25 H 0.110 0.890 26 H 0.273 0.727 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.392 0.608 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.350 0.650 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -24.565 -2.130 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.662 4.662 8 H 0.075 0.925 9 C 0.119 3.881 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.423 6.423 13 C -0.091 4.091 14 N -0.306 5.306 15 C -0.070 4.070 16 C -0.145 4.145 17 C -0.079 4.079 18 H 0.099 0.901 19 C -0.165 4.165 20 C -0.134 4.134 21 C -0.187 4.187 22 H 0.123 0.877 23 C -0.190 4.190 24 C -0.179 4.179 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.225 0.775 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.169 0.831 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.123 -23.047 -1.448 24.829 hybrid contribution 1.033 -1.631 -0.816 2.096 sum 10.156 -24.678 -2.264 26.782 Atomic orbital electron populations 1.70728 1.06877 1.31101 1.44982 1.25897 0.96445 1.02780 0.93317 0.83402 0.74481 0.74587 0.76880 1.21250 1.21389 1.20781 1.22091 0.94573 0.91519 1.57973 0.92453 1.19155 0.89025 0.83508 0.96419 1.46267 1.11002 1.05813 1.72852 1.20437 0.89622 0.84261 0.77620 1.90656 1.16744 1.84746 1.50124 1.21816 0.95573 0.89496 1.02255 1.60108 1.19061 1.00019 1.51421 1.22020 0.94478 0.90130 1.00369 1.21504 0.97791 0.92119 1.03091 1.21554 0.95992 0.92579 0.97810 0.90094 1.22628 1.00161 0.96183 0.97514 1.21915 0.96418 0.94404 1.00660 1.23186 0.92391 0.98495 1.04637 0.87683 1.23292 0.94841 1.02914 0.97980 1.23605 1.03777 0.95360 0.95183 0.87170 0.91647 0.96541 0.96621 0.77512 0.92876 0.88583 0.83093 0.95367 0.91135 0.90775 0.91905 0.91269 0.91191 0.91654 0.91033 0.88847 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.65 55.43 0.76 -26.80 16 2 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 3 Si 1.08 24.57 29.90 -169.99 -5.08 19.48 16 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.62 -17.29 9.28 -34.44 -0.32 -17.61 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.11 16 9 C 0.24 6.44 4.74 -5.20 -0.02 6.41 16 10 N -0.71 -15.21 5.55 -61.47 -0.34 -15.55 16 11 C 0.50 10.02 7.87 -10.99 -0.09 9.94 16 12 O -0.54 -13.27 16.20 5.56 0.09 -13.18 16 13 C 0.04 0.59 6.17 -4.97 -0.03 0.56 16 14 N -0.67 -9.40 6.13 -115.06 -0.70 -10.11 16 15 C 0.06 0.61 5.55 -3.83 -0.02 0.59 16 16 C -0.11 -1.01 5.00 -26.73 -0.13 -1.14 16 17 C -0.06 -0.48 2.81 -88.95 -0.25 -0.73 16 18 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.13 -0.94 5.12 -24.74 -0.13 -1.06 16 20 C -0.10 -0.66 6.76 -25.08 -0.17 -0.83 16 21 C -0.17 -1.22 6.97 -89.39 -0.62 -1.84 16 22 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 23 C -0.15 -1.14 9.95 -25.25 -0.25 -1.39 16 24 C -0.16 -1.26 6.55 -87.91 -0.58 -1.84 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 27 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 28 H 0.02 0.46 8.01 -51.92 -0.42 0.04 16 29 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.35 5.07 8.43 -39.29 -0.33 4.74 16 33 H 0.03 0.27 7.46 -51.93 -0.39 -0.12 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.07 0.54 7.27 -51.93 -0.38 0.16 16 38 H 0.07 0.49 8.02 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.72 7.27 -51.93 -0.38 0.34 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -32.58 342.05 -10.03 -42.61 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.20 Total: 6.81 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.71 Total: -8.43 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.29 Total: -52.45 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.58 -10.03 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717072527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.215 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds