Wall clock time and date at job start Mon Mar 30 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99960 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00377 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99618 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47018 * 179.97438 * 13 11 10 15 15 C 1.46895 * 111.00061 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47117 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.43363 * 54.30005 * 17 16 15 19 19 C 1.54898 * 110.48777 * 291.76006 * 17 16 15 20 20 C 1.54883 * 102.74842 * 203.37902 * 19 17 16 21 21 C 1.54264 * 104.19871 * 37.94460 * 20 19 17 22 22 H 1.08997 * 117.41305 * 196.41607 * 21 20 19 23 23 C 1.53000 * 118.19771 * 41.77760 * 21 20 19 24 24 C 1.54088 * 106.62073 * 336.27709 * 21 20 19 25 25 H 1.09002 * 121.47090 * 222.09195 * 24 21 20 26 26 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 28 28 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 29 29 H 0.97000 * 119.99261 * 0.02562 * 10 9 7 30 30 H 1.09001 * 109.47250 * 299.99546 * 13 11 10 31 31 H 1.08994 * 109.47456 * 60.00102 * 13 11 10 32 32 H 1.00897 * 110.99992 * 56.04239 * 14 13 11 33 33 H 1.09004 * 109.47349 * 300.00276 * 15 14 13 34 34 H 1.08998 * 109.46888 * 59.99909 * 15 14 13 35 35 H 1.08991 * 109.47753 * 300.00314 * 16 15 14 36 36 H 1.09006 * 109.46863 * 60.00635 * 16 15 14 37 37 H 1.09001 * 110.75119 * 321.69532 * 19 17 16 38 38 H 1.09003 * 110.75201 * 84.87655 * 19 17 16 39 39 H 1.09004 * 110.48570 * 156.62403 * 20 19 17 40 40 H 1.09006 * 110.48511 * 279.12717 * 20 19 17 41 41 H 1.08994 * 117.45992 * 13.98366 * 23 21 20 42 42 H 1.08998 * 117.45823 * 158.79297 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7333 -6.0287 -0.0005 14 7 1.9988 -7.3010 -0.0006 15 6 2.9233 -8.4425 -0.0006 16 6 2.1232 -9.7467 -0.0001 17 6 3.0861 -10.9357 0.0005 18 1 3.7887 -10.8560 0.8299 19 6 3.8454 -11.0191 -1.3471 20 6 4.2579 -12.5104 -1.4152 21 6 3.0495 -13.2647 -0.8232 22 1 3.2056 -14.2980 -0.5134 23 6 1.6452 -12.8066 -1.2221 24 6 2.3046 -12.2634 0.0805 25 1 1.9137 -12.5575 1.0546 26 1 -0.4849 -0.8401 -0.0004 27 1 0.6247 -2.5571 0.8896 28 1 0.6242 -2.5567 -0.8904 29 1 3.1568 -3.4353 -0.0002 30 1 3.3606 -5.9709 -0.8900 31 1 3.3592 -5.9711 0.8899 32 1 1.3627 -7.3512 -0.7822 33 1 3.5513 -8.4015 -0.8906 34 1 3.5512 -8.4015 0.8893 35 1 1.4955 -9.7876 0.8899 36 1 1.4950 -9.7879 -0.8900 37 1 3.1879 -10.7618 -2.1774 38 1 4.7230 -10.3727 -1.3365 39 1 4.4272 -12.8126 -2.4488 40 1 5.1513 -12.6869 -0.8160 41 1 1.5596 -12.1324 -2.0742 42 1 0.8312 -13.5220 -1.1057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717072527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:20 Heat of formation + Delta-G solvation = -56.775167 kcal Electronic energy + Delta-G solvation = -19315.118306 eV Core-core repulsion = 16293.671332 eV Total energy + Delta-G solvation = -3021.446974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74766 -40.52128 -37.25814 -36.34567 -34.46876 -33.52030 -31.30052 -29.69404 -27.97528 -25.81547 -24.57057 -24.34937 -22.79573 -21.47839 -20.48125 -19.92889 -19.38892 -17.94488 -17.36650 -17.26013 -16.77148 -16.00324 -15.76310 -15.56542 -15.26596 -15.03855 -14.65423 -14.39685 -14.27211 -13.92464 -13.57239 -13.39044 -13.28260 -13.10846 -12.83671 -12.55854 -12.18182 -12.04428 -11.89301 -11.80920 -11.64255 -11.39696 -11.03763 -10.87305 -10.79988 -10.77094 -10.38884 -9.98240 -9.41536 -8.80921 -6.56478 1.55481 1.64310 1.67793 1.82198 2.27306 2.56619 2.76807 3.07191 3.25537 3.51955 3.74252 3.83991 3.93292 4.07166 4.20812 4.26570 4.31949 4.36986 4.41852 4.54324 4.62713 4.68606 4.73226 4.77338 4.81010 4.88477 4.94369 4.95029 5.12027 5.17688 5.20202 5.31725 5.34535 5.39749 5.43400 5.51595 5.53148 5.94183 6.07849 6.28219 6.30945 6.80679 7.23350 7.41337 8.58416 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.060566 B = 0.002420 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.196126 B =11567.621525 C =11839.201797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.035 4.035 3 Si 1.133 2.867 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.253 3.747 10 N -0.706 5.706 11 C 0.492 3.508 12 O -0.592 6.592 13 C 0.058 3.942 14 N -0.694 5.694 15 C 0.064 3.936 16 C -0.101 4.101 17 C -0.056 4.056 18 H 0.086 0.914 19 C -0.126 4.126 20 C -0.096 4.096 21 C -0.166 4.166 22 H 0.113 0.887 23 C -0.159 4.159 24 C -0.173 4.173 25 H 0.110 0.890 26 H 0.254 0.746 27 H -0.019 1.019 28 H -0.017 1.017 29 H 0.410 0.590 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.343 0.657 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.303 -25.098 -2.248 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.233 4.233 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.211 1.211 7 C -0.667 4.667 8 H 0.095 0.905 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.074 4.074 14 N -0.327 5.327 15 C -0.064 4.064 16 C -0.139 4.139 17 C -0.074 4.074 18 H 0.104 0.896 19 C -0.164 4.164 20 C -0.134 4.134 21 C -0.184 4.184 22 H 0.131 0.869 23 C -0.196 4.196 24 C -0.191 4.191 25 H 0.128 0.872 26 H 0.063 0.937 27 H -0.001 1.001 28 H 0.000 1.000 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.205 -23.636 -1.561 26.647 hybrid contribution 0.047 -1.568 -0.777 1.751 sum 12.253 -25.204 -2.338 28.122 Atomic orbital electron populations 1.70880 1.08310 1.29935 1.47506 1.27700 0.96370 1.07299 0.91968 0.82750 0.74167 0.69879 0.77957 1.19601 1.18337 1.21099 1.22460 0.95623 0.91692 1.56885 0.90451 1.18659 0.89431 0.85720 0.93258 1.46043 1.11069 1.05269 1.73257 1.21558 0.90084 0.84937 0.75505 1.90636 1.19401 1.85403 1.51870 1.21750 0.93887 0.86964 1.04836 1.60135 1.20173 1.00810 1.51535 1.22070 0.94066 0.88864 1.01447 1.21430 0.97845 0.92578 1.02029 1.21507 0.95708 0.91793 0.98431 0.89618 1.22618 1.00181 0.96799 0.96769 1.21941 0.96450 0.93867 1.01093 1.23286 0.92329 0.98794 1.03955 0.86909 1.23344 0.95491 1.03085 0.97667 1.23658 1.04401 0.95692 0.95365 0.87210 0.93719 1.00127 0.99954 0.75398 0.89695 0.86093 0.83821 0.93789 0.90248 0.92271 0.92577 0.91882 0.90429 0.91200 0.90240 0.89292 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.65 21.45 0.29 -58.00 16 2 C -0.04 -1.99 5.46 84.65 0.46 -1.53 16 3 Si 1.13 48.12 29.90 68.60 2.05 50.17 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.63 -34.77 9.28 25.60 0.24 -34.53 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.25 13.96 4.74 85.63 0.41 14.37 16 10 N -0.71 -29.97 5.55 -466.78 -2.59 -32.56 16 11 C 0.49 19.70 7.87 87.66 0.69 20.39 16 12 O -0.59 -29.68 16.20 -3.03 -0.05 -29.73 16 13 C 0.06 1.52 6.17 85.56 0.53 2.05 16 14 N -0.69 -18.36 6.13 -517.94 -3.17 -21.53 16 15 C 0.06 1.18 5.55 86.30 0.48 1.66 16 16 C -0.10 -1.79 5.00 30.59 0.15 -1.64 16 17 C -0.06 -0.79 2.81 -9.71 -0.03 -0.82 16 18 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 19 C -0.13 -1.60 5.12 31.89 0.16 -1.44 16 20 C -0.10 -1.11 6.76 31.67 0.21 -0.90 16 21 C -0.17 -2.13 6.97 -10.00 -0.07 -2.20 16 22 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.16 -2.23 9.95 31.55 0.31 -1.91 16 24 C -0.17 -2.52 6.55 -9.04 -0.06 -2.58 16 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 27 H -0.02 -1.18 8.01 -2.38 -0.02 -1.20 16 28 H -0.02 -1.06 8.01 -2.38 -0.02 -1.08 16 29 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.34 9.79 8.43 -89.70 -0.76 9.03 16 33 H 0.04 0.70 7.46 -2.38 -0.02 0.68 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.06 8.06 -2.38 -0.02 1.04 16 37 H 0.06 0.88 7.27 -2.39 -0.02 0.87 16 38 H 0.08 0.87 8.02 -2.39 -0.02 0.85 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 1.31 7.27 -2.39 -0.02 1.30 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.57 342.05 -0.40 -72.97 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.42 Total: 27.76 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 3.49 Total: -9.08 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -5.47 Total: -112.09 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -72.57 -0.40 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717072527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.197 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds