Wall clock time and date at job start Mon Mar 30 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47166 * 274.97649 * 3 2 1 5 5 H 1.48502 * 109.47135 * 34.97654 * 3 2 1 6 6 H 1.48504 * 109.47058 * 154.97590 * 3 2 1 7 7 C 1.37879 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99598 * 187.01763 * 7 2 1 9 9 C 1.50694 * 120.00382 * 7.01477 * 7 2 1 10 10 H 1.08999 * 110.64494 * 302.06636 * 9 7 2 11 11 C 1.54595 * 110.72307 * 65.21451 * 9 7 2 12 12 C 1.53994 * 105.14195 * 140.31965 * 11 9 7 13 13 N 1.47902 * 107.05722 * 1.22039 * 12 11 9 14 14 C 1.46895 * 111.00289 * 214.16034 * 13 12 11 15 15 C 1.53001 * 109.47124 * 175.71911 * 14 13 12 16 16 H 1.08999 * 109.63457 * 330.93685 * 15 14 13 17 17 C 1.53062 * 109.63146 * 91.33732 * 15 14 13 18 18 C 1.51796 * 110.74590 * 34.78471 * 17 15 14 19 19 C 1.51779 * 113.80750 * 66.80655 * 18 17 15 20 20 C 1.52985 * 110.88384 * 292.99912 * 19 18 17 21 21 N 1.47189 * 108.66379 * 86.46933 * 20 19 18 22 22 C 1.33376 * 120.42832 * 288.03562 * 21 20 19 23 23 O 1.21282 * 119.89077 * 180.28427 * 22 21 20 24 24 C 1.48537 * 105.82097 * 334.67566 * 13 12 11 25 25 H 0.96999 * 119.99661 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.31208 * 21.39892 * 11 9 7 27 27 H 1.09005 * 110.30722 * 259.23201 * 11 9 7 28 28 H 1.08993 * 109.91956 * 120.57639 * 12 11 9 29 29 H 1.09003 * 109.91559 * 241.87317 * 12 11 9 30 30 H 1.09001 * 109.47200 * 295.71898 * 14 13 12 31 31 H 1.08999 * 109.47337 * 55.72084 * 14 13 12 32 32 H 1.09005 * 109.22477 * 155.10911 * 17 15 14 33 33 H 1.08999 * 109.22354 * 274.50126 * 17 15 14 34 34 H 1.08997 * 108.61344 * 187.92689 * 18 17 15 35 35 H 1.08994 * 108.61097 * 305.83219 * 18 17 15 36 36 H 1.09005 * 109.19786 * 53.36324 * 19 18 17 37 37 H 1.08999 * 109.19314 * 172.63221 * 19 18 17 38 38 H 1.09005 * 109.60049 * 206.22060 * 20 19 18 39 39 H 1.09001 * 109.60427 * 326.54903 * 20 19 18 40 40 H 0.97005 * 119.78872 * 108.04645 * 21 20 19 41 41 H 1.09001 * 110.66539 * 280.76999 * 24 13 12 42 42 H 1.08994 * 110.81162 * 157.70646 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1977 0.1137 9 6 1.2595 -2.4942 -0.1605 10 1 0.5108 -2.6071 0.6237 11 6 0.6049 -2.5812 -1.5583 12 6 0.7986 -4.0427 -2.0030 13 7 1.4952 -4.7425 -0.9018 14 6 2.4078 -5.7685 -1.4238 15 6 3.1865 -6.3953 -0.2656 16 1 3.2999 -5.6662 0.5366 17 6 2.4336 -7.6215 0.2563 18 6 1.7358 -8.3476 -0.8794 19 6 2.6873 -8.9877 -1.8738 20 6 3.4673 -7.9218 -2.6458 21 7 4.6635 -7.5584 -1.8689 22 6 4.5503 -6.8397 -0.7510 23 8 5.5429 -6.5413 -0.1212 24 6 2.2418 -3.6924 -0.1628 25 1 -0.4849 0.8401 -0.0004 26 1 1.1040 -1.9051 -2.2526 27 1 -0.4569 -2.3429 -1.4943 28 1 -0.1705 -4.5074 -2.1840 29 1 1.4053 -4.0782 -2.9079 30 1 1.8324 -6.5405 -1.9348 31 1 3.1055 -5.3111 -2.1254 32 1 3.1401 -8.2995 0.7353 33 1 1.6908 -7.3022 0.9873 34 1 1.0997 -9.1251 -0.4565 35 1 1.1058 -7.6356 -1.4125 36 1 3.3887 -9.6273 -1.3380 37 1 2.1163 -9.5937 -2.5771 38 1 3.7677 -8.3192 -3.6154 39 1 2.8402 -7.0420 -2.7894 40 1 5.5399 -7.8433 -2.1719 41 1 3.1622 -3.4342 -0.6864 42 1 2.4575 -4.0148 0.8558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721148790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:03 Heat of formation + Delta-G solvation = -20.130532 kcal Electronic energy + Delta-G solvation = -21431.345427 eV Core-core repulsion = 18411.487484 eV Total energy + Delta-G solvation = -3019.857943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83556 -38.05323 -36.87499 -34.21836 -33.02419 -31.70297 -29.93127 -28.26125 -27.05370 -25.06417 -24.12921 -23.36014 -20.86992 -20.03953 -19.51233 -18.83851 -17.30935 -16.80647 -16.24468 -15.50197 -15.24730 -14.57434 -14.37738 -14.24615 -13.95510 -13.79889 -13.42746 -13.10338 -12.82311 -12.26104 -12.19144 -12.00297 -11.70163 -11.34730 -11.12553 -11.04228 -10.92070 -10.77176 -10.67759 -10.44806 -10.31583 -9.97788 -9.61384 -9.56277 -9.22313 -9.06094 -8.81145 -8.36474 -7.80383 -6.01741 -4.03219 2.71608 3.26944 3.31344 3.38754 3.42835 4.29692 4.45821 4.55041 4.64520 4.65433 4.90699 5.03228 5.14952 5.26789 5.30957 5.34757 5.39985 5.60494 5.69323 5.73298 5.76186 5.83572 5.95846 6.01845 6.08755 6.18745 6.23519 6.30134 6.42181 6.51933 6.77454 6.85952 7.08441 7.12477 7.23084 7.49949 7.62457 7.68166 7.88891 8.03693 8.27029 8.46115 8.99601 9.60566 11.08526 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004818 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.535368 B = 5809.599148 C = 6240.674596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.053 3.947 10 H 0.041 0.959 11 C -0.108 4.108 12 C 0.036 3.964 13 N -0.517 5.517 14 C 0.032 3.968 15 C -0.107 4.107 16 H 0.115 0.885 17 C -0.100 4.100 18 C -0.134 4.134 19 C -0.139 4.139 20 C 0.078 3.922 21 N -0.724 5.724 22 C 0.525 3.475 23 O -0.552 6.552 24 C 0.038 3.962 25 H 0.260 0.740 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.396 0.604 41 H 0.034 0.966 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -17.848 -6.522 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.034 3.966 10 H 0.059 0.941 11 C -0.147 4.147 12 C -0.092 4.092 13 N -0.241 5.241 14 C -0.096 4.096 15 C -0.128 4.128 16 H 0.133 0.867 17 C -0.138 4.138 18 C -0.170 4.170 19 C -0.177 4.177 20 C -0.046 4.046 21 N -0.377 5.377 22 C 0.311 3.689 23 O -0.429 6.429 24 C -0.089 4.089 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.052 0.948 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.202 -17.781 -5.778 18.825 hybrid contribution 1.408 1.157 -0.837 2.005 sum 3.610 -16.623 -6.615 18.252 Atomic orbital electron populations 1.69985 1.05892 1.26481 1.50155 1.24946 0.94770 0.98976 0.94961 0.86651 0.80116 0.83766 0.77936 1.20794 1.21240 1.19836 1.21107 0.93475 0.90624 1.50308 0.92618 1.19523 0.93039 0.90912 0.93107 0.94052 1.22392 1.01298 0.91058 0.99917 1.22933 0.97528 0.96897 0.91861 1.64843 1.25487 1.12118 1.21677 1.23059 0.95029 0.96559 0.94972 1.21748 0.91163 0.99439 1.00463 0.86681 1.21165 0.99460 0.94908 0.98251 1.21322 0.98713 1.00130 0.96885 1.21810 0.99014 0.98132 0.98791 1.22433 0.87724 1.00136 0.94267 1.45885 1.10266 1.55556 1.25958 1.20681 0.91607 0.76630 0.79940 1.90739 1.39534 1.56347 1.56310 1.23416 0.96542 0.92082 0.96860 0.93063 0.92851 0.92229 0.91839 0.95463 0.88053 0.95138 0.92258 0.89961 0.91716 0.89997 0.91506 0.90740 0.89958 0.88047 0.76812 0.94802 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.92 55.43 0.72 -24.80 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.26 8.38 -34.44 -0.29 -14.55 16 8 H 0.06 1.54 7.78 -52.49 -0.41 1.13 16 9 C 0.05 1.33 2.87 -89.91 -0.26 1.07 16 10 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 11 C -0.11 -2.46 5.93 -25.37 -0.15 -2.61 16 12 C 0.04 0.65 6.70 -2.75 -0.02 0.63 16 13 N -0.52 -9.20 5.35 -230.46 -1.23 -10.43 16 14 C 0.03 0.45 2.47 -3.83 -0.01 0.44 16 15 C -0.11 -1.52 2.67 -91.38 -0.24 -1.76 16 16 H 0.12 1.93 5.87 -51.93 -0.31 1.63 16 17 C -0.10 -1.15 5.48 -27.31 -0.15 -1.30 16 18 C -0.13 -1.21 5.19 -27.96 -0.15 -1.36 16 19 C -0.14 -1.04 5.73 -27.36 -0.16 -1.20 16 20 C 0.08 0.63 6.37 -3.67 -0.02 0.61 16 21 N -0.72 -7.83 5.27 -59.90 -0.32 -8.14 16 22 C 0.53 7.80 6.43 -11.25 -0.07 7.73 16 23 O -0.55 -10.57 17.92 5.56 0.10 -10.48 16 24 C 0.04 0.80 4.92 -1.90 -0.01 0.79 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 1.28 7.84 -51.93 -0.41 0.88 16 27 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.46 7.67 -51.93 -0.40 0.06 16 30 H 0.10 1.18 2.85 -51.93 -0.15 1.03 16 31 H 0.03 0.47 7.28 -51.93 -0.38 0.09 16 32 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.79 5.51 -51.93 -0.29 0.51 16 36 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.92 3.62 -51.93 -0.19 0.73 16 40 H 0.40 3.75 8.91 -40.82 -0.36 3.39 16 41 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 42 H 0.06 1.35 7.02 -51.93 -0.36 0.99 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -31.26 314.25 -9.22 -40.48 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.58 Total: 2.00 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.62 Total: -9.78 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.83 Total: -43.37 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.10 Total: -10.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.26 -9.22 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721148790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.348 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds