Wall clock time and date at job start Mon Mar 30 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47166 * 274.97649 * 3 2 1 5 5 H 1.48502 * 109.47135 * 34.97654 * 3 2 1 6 6 H 1.48504 * 109.47058 * 154.97590 * 3 2 1 7 7 C 1.37879 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99598 * 187.01763 * 7 2 1 9 9 C 1.50694 * 120.00382 * 7.01477 * 7 2 1 10 10 H 1.08999 * 110.64494 * 302.06636 * 9 7 2 11 11 C 1.54595 * 110.72307 * 65.21451 * 9 7 2 12 12 C 1.53994 * 105.14195 * 140.31965 * 11 9 7 13 13 N 1.47902 * 107.05722 * 1.22039 * 12 11 9 14 14 C 1.46895 * 111.00289 * 214.16034 * 13 12 11 15 15 C 1.53001 * 109.47124 * 175.71911 * 14 13 12 16 16 H 1.08999 * 109.63457 * 330.93685 * 15 14 13 17 17 C 1.53062 * 109.63146 * 91.33732 * 15 14 13 18 18 C 1.51796 * 110.74590 * 34.78471 * 17 15 14 19 19 C 1.51779 * 113.80750 * 66.80655 * 18 17 15 20 20 C 1.52985 * 110.88384 * 292.99912 * 19 18 17 21 21 N 1.47189 * 108.66379 * 86.46933 * 20 19 18 22 22 C 1.33376 * 120.42832 * 288.03562 * 21 20 19 23 23 O 1.21282 * 119.89077 * 180.28427 * 22 21 20 24 24 C 1.48537 * 105.82097 * 334.67566 * 13 12 11 25 25 H 0.96999 * 119.99661 * 0.02562 * 1 2 3 26 26 H 1.09002 * 110.31208 * 21.39892 * 11 9 7 27 27 H 1.09005 * 110.30722 * 259.23201 * 11 9 7 28 28 H 1.08993 * 109.91956 * 120.57639 * 12 11 9 29 29 H 1.09003 * 109.91559 * 241.87317 * 12 11 9 30 30 H 1.09001 * 109.47200 * 295.71898 * 14 13 12 31 31 H 1.08999 * 109.47337 * 55.72084 * 14 13 12 32 32 H 1.09005 * 109.22477 * 155.10911 * 17 15 14 33 33 H 1.08999 * 109.22354 * 274.50126 * 17 15 14 34 34 H 1.08997 * 108.61344 * 187.92689 * 18 17 15 35 35 H 1.08994 * 108.61097 * 305.83219 * 18 17 15 36 36 H 1.09005 * 109.19786 * 53.36324 * 19 18 17 37 37 H 1.08999 * 109.19314 * 172.63221 * 19 18 17 38 38 H 1.09005 * 109.60049 * 206.22060 * 20 19 18 39 39 H 1.09001 * 109.60427 * 326.54903 * 20 19 18 40 40 H 0.97005 * 119.78872 * 108.04645 * 21 20 19 41 41 H 1.09001 * 110.66539 * 280.76999 * 24 13 12 42 42 H 1.08994 * 110.81162 * 157.70646 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 -0.0005 8 1 3.0784 -1.1977 0.1137 9 6 1.2595 -2.4942 -0.1605 10 1 0.5108 -2.6071 0.6237 11 6 0.6049 -2.5812 -1.5583 12 6 0.7986 -4.0427 -2.0030 13 7 1.4952 -4.7425 -0.9018 14 6 2.4078 -5.7685 -1.4238 15 6 3.1865 -6.3953 -0.2656 16 1 3.2999 -5.6662 0.5366 17 6 2.4336 -7.6215 0.2563 18 6 1.7358 -8.3476 -0.8794 19 6 2.6873 -8.9877 -1.8738 20 6 3.4673 -7.9218 -2.6458 21 7 4.6635 -7.5584 -1.8689 22 6 4.5503 -6.8397 -0.7510 23 8 5.5429 -6.5413 -0.1212 24 6 2.2418 -3.6924 -0.1628 25 1 -0.4849 0.8401 -0.0004 26 1 1.1040 -1.9051 -2.2526 27 1 -0.4569 -2.3429 -1.4943 28 1 -0.1705 -4.5074 -2.1840 29 1 1.4053 -4.0782 -2.9079 30 1 1.8324 -6.5405 -1.9348 31 1 3.1055 -5.3111 -2.1254 32 1 3.1401 -8.2995 0.7353 33 1 1.6908 -7.3022 0.9873 34 1 1.0997 -9.1251 -0.4565 35 1 1.1058 -7.6356 -1.4125 36 1 3.3887 -9.6273 -1.3380 37 1 2.1163 -9.5937 -2.5771 38 1 3.7677 -8.3192 -3.6154 39 1 2.8402 -7.0420 -2.7894 40 1 5.5399 -7.8433 -2.1719 41 1 3.1622 -3.4342 -0.6864 42 1 2.4575 -4.0148 0.8558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721148790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:03 Heat of formation + Delta-G solvation = -43.062723 kcal Electronic energy + Delta-G solvation = -21432.339841 eV Core-core repulsion = 18411.487484 eV Total energy + Delta-G solvation = -3020.852357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90624 -39.57819 -38.02405 -35.46690 -34.66206 -32.97015 -31.39992 -29.90248 -28.24199 -26.76370 -25.07348 -24.72533 -22.10675 -21.63926 -20.88750 -19.99192 -18.50531 -18.25005 -17.70267 -16.88135 -16.50741 -16.38730 -15.90124 -15.27946 -15.11593 -14.83379 -14.58287 -14.27726 -14.12396 -14.01132 -13.50064 -13.37426 -13.09045 -12.79720 -12.75605 -12.54564 -12.41896 -12.21365 -12.04748 -11.66775 -11.58289 -11.46445 -11.16693 -10.95359 -10.85520 -10.69656 -10.50500 -10.02877 -9.29005 -8.16607 -6.25053 1.38322 1.39664 1.50311 1.56595 2.34276 2.40972 3.05391 3.15612 3.58782 3.65822 3.82760 4.00029 4.08408 4.19574 4.21190 4.37082 4.43021 4.48143 4.54578 4.56633 4.64075 4.67969 4.86345 4.87879 4.93946 5.03540 5.09302 5.17020 5.22719 5.25641 5.31548 5.34270 5.55931 5.59352 5.76669 5.84704 5.90822 5.99808 6.22886 6.25064 6.39658 6.84234 7.20746 7.42070 8.93436 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004818 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.535368 B = 5809.599148 C = 6240.674596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.043 3.957 10 H 0.007 0.993 11 C -0.101 4.101 12 C 0.045 3.955 13 N -0.515 5.515 14 C 0.037 3.963 15 C -0.106 4.106 16 H 0.081 0.919 17 C -0.097 4.097 18 C -0.131 4.131 19 C -0.135 4.135 20 C 0.072 3.928 21 N -0.709 5.709 22 C 0.522 3.478 23 O -0.607 6.607 24 C 0.054 3.946 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.140 0.860 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.405 0.595 41 H 0.020 0.980 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -19.834 -8.593 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.024 3.976 10 H 0.025 0.975 11 C -0.140 4.140 12 C -0.083 4.083 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.128 4.128 16 H 0.099 0.901 17 C -0.135 4.135 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.050 4.050 21 N -0.359 5.359 22 C 0.308 3.692 23 O -0.489 6.489 24 C -0.074 4.074 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.157 0.843 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.242 0.758 41 H 0.038 0.962 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.990 -19.804 -7.896 21.413 hybrid contribution 1.456 1.726 -0.185 2.265 sum 3.446 -18.079 -8.081 20.100 Atomic orbital electron populations 1.70090 1.07147 1.27366 1.50771 1.25679 0.95590 1.02180 0.94544 0.85667 0.78798 0.79718 0.78250 1.19921 1.20606 1.19666 1.21418 0.93313 0.92310 1.50580 0.93506 1.19468 0.93095 0.91639 0.93386 0.97504 1.22183 0.99444 0.94201 0.98160 1.22867 0.99379 0.93704 0.92300 1.64832 1.25788 1.11355 1.21897 1.23247 0.94819 0.96107 0.94823 1.21648 0.91598 0.99987 0.99564 0.90087 1.21167 0.99085 0.93886 0.99330 1.21321 0.98916 1.00308 0.96253 1.21805 0.98782 0.97865 0.98812 1.22711 0.86584 1.00190 0.95532 1.45879 1.11996 1.53562 1.24480 1.20762 0.90914 0.76821 0.80655 1.90711 1.40961 1.58846 1.58359 1.23082 0.95192 0.91815 0.97269 0.92882 0.94729 0.94051 0.89140 0.93380 0.84263 0.95678 0.92392 0.90702 0.90054 0.90114 0.91779 0.87631 0.86318 0.88752 0.75828 0.96151 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.85 12.92 21.45 0.28 -53.57 16 2 C 0.02 1.11 5.30 84.65 0.45 1.56 16 3 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.71 8.38 25.60 0.21 -30.50 16 8 H 0.05 2.68 7.78 -2.91 -0.02 2.66 16 9 C 0.04 2.24 2.87 -10.34 -0.03 2.21 16 10 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 11 C -0.10 -4.68 5.93 31.47 0.19 -4.49 16 12 C 0.04 1.56 6.70 86.45 0.58 2.14 16 13 N -0.51 -17.87 5.35 -883.03 -4.73 -22.59 16 14 C 0.04 0.98 2.47 86.30 0.21 1.20 16 15 C -0.11 -2.99 2.67 -11.29 -0.03 -3.02 16 16 H 0.08 2.85 5.87 -2.39 -0.01 2.83 16 17 C -0.10 -2.10 5.48 30.22 0.17 -1.94 16 18 C -0.13 -1.90 5.19 29.80 0.15 -1.75 16 19 C -0.13 -1.40 5.73 30.19 0.17 -1.23 16 20 C 0.07 0.86 6.37 86.24 0.55 1.41 16 21 N -0.71 -13.72 5.27 -462.60 -2.44 -16.16 16 22 C 0.52 15.30 6.43 88.10 0.57 15.87 16 23 O -0.61 -23.90 17.92 -3.04 -0.05 -23.95 16 24 C 0.05 2.35 4.92 86.65 0.43 2.78 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.03 1.68 7.84 -2.39 -0.02 1.66 16 27 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.05 1.49 7.67 -2.39 -0.02 1.47 16 30 H 0.14 2.71 2.85 -2.39 -0.01 2.70 16 31 H 0.03 0.72 7.28 -2.39 -0.02 0.70 16 32 H 0.06 1.27 7.86 -2.38 -0.02 1.25 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.21 5.51 -2.39 -0.01 1.20 16 36 H 0.06 0.77 8.05 -2.38 -0.02 0.75 16 37 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 1.29 3.62 -2.39 -0.01 1.29 16 40 H 0.41 6.77 8.91 -92.70 -0.83 5.95 16 41 H 0.02 0.93 7.91 -2.39 -0.02 0.91 16 42 H 0.06 2.66 7.02 -2.39 -0.02 2.65 16 Total: -1.00 -71.27 314.25 -1.10 -72.37 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.19 Total: 13.03 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.62 Total: -15.77 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -6.89 Total: -92.32 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.27 -1.10 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721148790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.312 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds