Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47141 * 269.99949 * 3 2 1 5 5 H 1.48504 * 109.46974 * 30.00213 * 3 2 1 6 6 H 1.48496 * 109.46974 * 150.00063 * 3 2 1 7 7 C 1.37874 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99832 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.78662 * 61.79094 * 9 7 2 11 11 C 1.54594 * 110.72185 * 298.53789 * 9 7 2 12 12 C 1.53994 * 105.22651 * 219.73427 * 11 9 7 13 13 N 1.47897 * 107.06229 * 358.72966 * 12 11 9 14 14 C 1.46897 * 111.00034 * 145.83912 * 13 12 11 15 15 C 1.52999 * 109.46919 * 69.88069 * 14 13 12 16 16 H 1.08996 * 109.63048 * 331.06856 * 15 14 13 17 17 C 1.53056 * 109.63464 * 91.46620 * 15 14 13 18 18 C 1.51793 * 110.74499 * 34.79127 * 17 15 14 19 19 C 1.51771 * 113.81618 * 66.80402 * 18 17 15 20 20 C 1.52987 * 110.88126 * 293.00082 * 19 18 17 21 21 N 1.47190 * 108.67077 * 86.46535 * 20 19 18 22 22 C 1.33702 * 120.50561 * 287.88026 * 21 20 19 23 23 O 1.21284 * 120.11370 * 180.28558 * 22 21 20 24 24 C 1.48537 * 105.81606 * 25.32603 * 13 12 11 25 25 H 0.97003 * 119.99878 * 359.97438 * 1 2 3 26 26 H 1.09007 * 110.30675 * 100.77140 * 11 9 7 27 27 H 1.08999 * 110.31205 * 338.70537 * 11 9 7 28 28 H 1.09006 * 109.91293 * 118.08230 * 12 11 9 29 29 H 1.09006 * 109.91844 * 239.37098 * 12 11 9 30 30 H 1.09001 * 109.46716 * 189.87187 * 14 13 12 31 31 H 1.08992 * 109.47468 * 309.87195 * 14 13 12 32 32 H 1.09004 * 109.21989 * 155.10792 * 17 15 14 33 33 H 1.08993 * 109.22432 * 274.45552 * 17 15 14 34 34 H 1.09004 * 108.61365 * 187.92598 * 18 17 15 35 35 H 1.09000 * 108.60939 * 305.68091 * 18 17 15 36 36 H 1.08996 * 109.19892 * 53.35815 * 19 18 17 37 37 H 1.08997 * 109.20044 * 172.68756 * 19 18 17 38 38 H 1.08999 * 109.60783 * 206.22253 * 20 19 18 39 39 H 1.09006 * 109.60565 * 326.54135 * 20 19 18 40 40 H 0.97002 * 119.78766 * 108.03519 * 21 20 19 41 41 H 1.08999 * 110.66578 * 79.22940 * 24 13 12 42 42 H 1.09005 * 110.66484 * 202.19143 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8979 -0.7129 0.8985 11 6 4.0589 -0.5024 -1.2695 12 6 5.2710 -1.3489 -1.7005 13 7 5.4153 -2.4366 -0.7088 14 6 5.9042 -3.6673 -1.3446 15 6 7.3623 -3.4781 -1.7676 16 1 7.5466 -2.4264 -1.9865 17 6 8.2889 -3.9388 -0.6399 18 6 7.6933 -5.1267 0.0939 19 6 7.6059 -6.3862 -0.7483 20 6 6.5983 -6.2125 -1.8863 21 7 7.2852 -5.5983 -3.0341 22 6 7.6469 -4.3116 -2.9995 23 8 8.2079 -3.8113 -3.9513 24 6 4.0626 -2.6381 -0.1292 25 1 -0.4850 0.8401 0.0004 26 1 4.3714 0.5165 -1.0404 27 1 3.3023 -0.4979 -2.0541 28 1 5.0965 -1.7700 -2.6907 29 1 6.1701 -0.7327 -1.7093 30 1 5.8355 -4.4937 -0.6372 31 1 5.2970 -3.8888 -2.2222 32 1 9.2529 -4.2240 -1.0614 33 1 8.4339 -3.1186 0.0631 34 1 8.3055 -5.3364 0.9711 35 1 6.6905 -4.8615 0.4287 36 1 8.5874 -6.6050 -1.1690 37 1 7.2930 -7.2182 -0.1175 38 1 6.2017 -7.1857 -2.1754 39 1 5.7827 -5.5683 -1.5575 40 1 7.4752 -6.1300 -3.8229 41 1 3.4396 -3.2274 -0.8020 42 1 4.1301 -3.1161 0.8481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721148794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -16.150637 kcal Electronic energy + Delta-G solvation = -21448.055484 eV Core-core repulsion = 18428.370122 eV Total energy + Delta-G solvation = -3019.685362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89066 -38.24917 -36.99761 -34.32306 -33.05786 -31.81800 -30.32870 -28.47397 -27.48947 -24.83554 -24.12202 -23.60129 -20.95478 -20.19882 -19.62558 -18.96926 -17.37720 -16.91877 -16.50266 -15.60263 -15.53486 -14.81465 -14.49686 -14.21286 -13.99329 -13.79397 -13.48987 -13.18039 -12.91355 -12.60841 -12.43374 -12.24175 -11.96789 -11.56404 -11.28764 -11.21914 -10.89630 -10.84464 -10.63725 -10.50887 -10.16645 -9.93742 -9.89764 -9.69358 -9.44376 -9.17169 -9.02135 -8.57512 -7.97299 -6.09810 -4.09543 2.60536 3.19378 3.29517 3.38556 3.41319 4.19177 4.41360 4.46872 4.59247 4.61007 4.78208 4.95152 5.07715 5.20407 5.23259 5.28271 5.32314 5.52352 5.53353 5.63980 5.67671 5.73402 5.78525 5.90115 5.95954 6.02202 6.11661 6.17879 6.23983 6.27983 6.52013 6.70589 6.74334 6.77747 6.99169 7.13772 7.28254 7.45413 7.56317 7.78483 8.16934 8.48974 8.92501 9.53078 11.03224 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.004869 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.748459 B = 5749.371953 C = 5987.310057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.018 3.982 10 H 0.039 0.961 11 C -0.141 4.141 12 C 0.039 3.961 13 N -0.519 5.519 14 C 0.030 3.970 15 C -0.102 4.102 16 H 0.109 0.891 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.139 4.139 20 C 0.078 3.922 21 N -0.724 5.724 22 C 0.525 3.475 23 O -0.554 6.554 24 C 0.051 3.949 25 H 0.264 0.736 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.397 0.603 41 H 0.041 0.959 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.023 -12.535 -1.150 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.002 4.002 10 H 0.058 0.942 11 C -0.180 4.180 12 C -0.089 4.089 13 N -0.243 5.243 14 C -0.098 4.098 15 C -0.123 4.123 16 H 0.127 0.873 17 C -0.137 4.137 18 C -0.171 4.171 19 C -0.177 4.177 20 C -0.046 4.046 21 N -0.376 5.376 22 C 0.312 3.688 23 O -0.431 6.431 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.059 0.941 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.496 -11.903 -1.065 19.568 hybrid contribution -0.144 0.429 -1.085 1.175 sum 15.352 -11.474 -2.150 19.286 Atomic orbital electron populations 1.69901 1.06325 1.26994 1.50753 1.24968 0.94627 0.99044 0.94275 0.86911 0.80159 0.83586 0.78504 1.20360 1.22069 1.18749 1.20952 0.88487 0.94485 1.51183 0.90858 1.20052 0.96135 0.90697 0.93267 0.94250 1.22915 0.95824 0.98069 1.01169 1.22856 0.98874 0.93805 0.93376 1.64814 1.25772 1.04593 1.29094 1.23072 0.93146 0.95059 0.98548 1.21648 0.96926 1.00891 0.92872 0.87305 1.21155 0.97423 0.98463 0.96678 1.21323 1.02932 0.94135 0.98754 1.21803 1.00086 0.98485 0.97357 1.22451 0.96195 0.99591 0.86358 1.45956 1.60649 1.11402 1.19629 1.20750 0.77039 0.82227 0.88822 1.90732 1.42809 1.71713 1.37896 1.23227 0.86319 0.99797 0.98229 0.92647 0.93175 0.91240 0.94640 0.91589 0.87635 0.94688 0.92257 0.90025 0.91638 0.89987 0.91493 0.90593 0.89779 0.87993 0.76779 0.94075 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.88 21.61 24.72 -169.99 -4.20 17.41 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.21 6.38 56.52 0.36 -5.85 16 7 C -0.51 -14.01 9.01 -34.44 -0.31 -14.32 16 8 H 0.07 2.15 8.03 -52.48 -0.42 1.73 16 9 C 0.02 0.41 2.47 -89.82 -0.22 0.19 16 10 H 0.04 0.94 7.37 -51.93 -0.38 0.55 16 11 C -0.14 -3.01 4.68 -25.38 -0.12 -3.13 16 12 C 0.04 0.69 5.74 -2.76 -0.02 0.68 16 13 N -0.52 -8.60 5.26 -230.34 -1.21 -9.82 16 14 C 0.03 0.39 2.39 -3.83 -0.01 0.38 16 15 C -0.10 -1.30 2.70 -91.39 -0.25 -1.55 16 16 H 0.11 1.58 6.86 -51.93 -0.36 1.23 16 17 C -0.10 -1.04 5.48 -27.32 -0.15 -1.19 16 18 C -0.13 -1.15 5.19 -27.97 -0.15 -1.30 16 19 C -0.14 -0.99 5.74 -27.36 -0.16 -1.15 16 20 C 0.08 0.60 6.36 -3.67 -0.02 0.58 16 21 N -0.72 -7.30 5.28 -59.82 -0.32 -7.61 16 22 C 0.53 7.17 6.46 -11.11 -0.07 7.10 16 23 O -0.55 -9.82 17.92 5.55 0.10 -9.72 16 24 C 0.05 0.97 5.96 -1.81 -0.01 0.96 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 26 H 0.05 1.06 5.94 -51.93 -0.31 0.75 16 27 H 0.07 1.57 7.79 -51.93 -0.40 1.17 16 28 H 0.04 0.62 7.57 -51.93 -0.39 0.23 16 29 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 30 H 0.11 1.19 2.83 -51.93 -0.15 1.04 16 31 H 0.04 0.50 7.11 -51.93 -0.37 0.13 16 32 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.77 5.52 -51.93 -0.29 0.48 16 36 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.90 3.63 -51.93 -0.19 0.71 16 40 H 0.40 3.50 8.91 -40.82 -0.36 3.13 16 41 H 0.04 0.80 7.92 -51.93 -0.41 0.39 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -31.89 307.59 -8.35 -40.24 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.55 Total: 2.13 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.58 Total: -10.79 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.75 Total: -43.90 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.10 Total: -9.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.20 Total: 17.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.89 -8.35 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721148794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.088 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds