Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47141 * 269.99949 * 3 2 1 5 5 H 1.48504 * 109.46974 * 30.00213 * 3 2 1 6 6 H 1.48496 * 109.46974 * 150.00063 * 3 2 1 7 7 C 1.37874 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99832 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.78662 * 61.79094 * 9 7 2 11 11 C 1.54594 * 110.72185 * 298.53789 * 9 7 2 12 12 C 1.53994 * 105.22651 * 219.73427 * 11 9 7 13 13 N 1.47897 * 107.06229 * 358.72966 * 12 11 9 14 14 C 1.46897 * 111.00034 * 145.83912 * 13 12 11 15 15 C 1.52999 * 109.46919 * 69.88069 * 14 13 12 16 16 H 1.08996 * 109.63048 * 331.06856 * 15 14 13 17 17 C 1.53056 * 109.63464 * 91.46620 * 15 14 13 18 18 C 1.51793 * 110.74499 * 34.79127 * 17 15 14 19 19 C 1.51771 * 113.81618 * 66.80402 * 18 17 15 20 20 C 1.52987 * 110.88126 * 293.00082 * 19 18 17 21 21 N 1.47190 * 108.67077 * 86.46535 * 20 19 18 22 22 C 1.33702 * 120.50561 * 287.88026 * 21 20 19 23 23 O 1.21284 * 120.11370 * 180.28558 * 22 21 20 24 24 C 1.48537 * 105.81606 * 25.32603 * 13 12 11 25 25 H 0.97003 * 119.99878 * 359.97438 * 1 2 3 26 26 H 1.09007 * 110.30675 * 100.77140 * 11 9 7 27 27 H 1.08999 * 110.31205 * 338.70537 * 11 9 7 28 28 H 1.09006 * 109.91293 * 118.08230 * 12 11 9 29 29 H 1.09006 * 109.91844 * 239.37098 * 12 11 9 30 30 H 1.09001 * 109.46716 * 189.87187 * 14 13 12 31 31 H 1.08992 * 109.47468 * 309.87195 * 14 13 12 32 32 H 1.09004 * 109.21989 * 155.10792 * 17 15 14 33 33 H 1.08993 * 109.22432 * 274.45552 * 17 15 14 34 34 H 1.09004 * 108.61365 * 187.92598 * 18 17 15 35 35 H 1.09000 * 108.60939 * 305.68091 * 18 17 15 36 36 H 1.08996 * 109.19892 * 53.35815 * 19 18 17 37 37 H 1.08997 * 109.20044 * 172.68756 * 19 18 17 38 38 H 1.08999 * 109.60783 * 206.22253 * 20 19 18 39 39 H 1.09006 * 109.60565 * 326.54135 * 20 19 18 40 40 H 0.97002 * 119.78766 * 108.03519 * 21 20 19 41 41 H 1.08999 * 110.66578 * 79.22940 * 24 13 12 42 42 H 1.09005 * 110.66484 * 202.19143 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8979 -0.7129 0.8985 11 6 4.0589 -0.5024 -1.2695 12 6 5.2710 -1.3489 -1.7005 13 7 5.4153 -2.4366 -0.7088 14 6 5.9042 -3.6673 -1.3446 15 6 7.3623 -3.4781 -1.7676 16 1 7.5466 -2.4264 -1.9865 17 6 8.2889 -3.9388 -0.6399 18 6 7.6933 -5.1267 0.0939 19 6 7.6059 -6.3862 -0.7483 20 6 6.5983 -6.2125 -1.8863 21 7 7.2852 -5.5983 -3.0341 22 6 7.6469 -4.3116 -2.9995 23 8 8.2079 -3.8113 -3.9513 24 6 4.0626 -2.6381 -0.1292 25 1 -0.4850 0.8401 0.0004 26 1 4.3714 0.5165 -1.0404 27 1 3.3023 -0.4979 -2.0541 28 1 5.0965 -1.7700 -2.6907 29 1 6.1701 -0.7327 -1.7093 30 1 5.8355 -4.4937 -0.6372 31 1 5.2970 -3.8888 -2.2222 32 1 9.2529 -4.2240 -1.0614 33 1 8.4339 -3.1186 0.0631 34 1 8.3055 -5.3364 0.9711 35 1 6.6905 -4.8615 0.4287 36 1 8.5874 -6.6050 -1.1690 37 1 7.2930 -7.2182 -0.1175 38 1 6.2017 -7.1857 -2.1754 39 1 5.7827 -5.5683 -1.5575 40 1 7.4752 -6.1300 -3.8229 41 1 3.4396 -3.2274 -0.8020 42 1 4.1301 -3.1161 0.8481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721148794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -40.521849 kcal Electronic energy + Delta-G solvation = -21449.112299 eV Core-core repulsion = 18428.370122 eV Total energy + Delta-G solvation = -3020.742177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87372 -39.67749 -38.05100 -35.48686 -34.65054 -33.18138 -31.60707 -30.10775 -28.54959 -26.30230 -25.09143 -24.88135 -22.20321 -21.59022 -20.96252 -20.03607 -18.70640 -18.27824 -17.74294 -17.01691 -16.62540 -16.34492 -15.88098 -15.34153 -15.09250 -14.80371 -14.69481 -14.53874 -14.21373 -14.18843 -13.69762 -13.47485 -13.14841 -12.80663 -12.70487 -12.52448 -12.32670 -12.20029 -11.80468 -11.73069 -11.60553 -11.47934 -11.38361 -11.06950 -10.98034 -10.73172 -10.66707 -10.03330 -9.35611 -8.29567 -6.32869 1.34037 1.37197 1.47237 1.55823 2.33941 2.34617 2.99737 3.07235 3.56396 3.66561 3.83011 3.93014 3.99198 4.10157 4.18860 4.23310 4.34780 4.46184 4.50533 4.54205 4.60191 4.65335 4.75176 4.87035 4.89210 4.95014 5.05732 5.07269 5.14485 5.16554 5.26007 5.28521 5.33984 5.54727 5.60427 5.64464 5.88452 5.92546 6.17103 6.22816 6.33370 6.73536 7.19861 7.33323 8.86921 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.004869 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.748459 B = 5749.371953 C = 5987.310057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.038 0.962 9 C 0.010 3.990 10 H 0.037 0.963 11 C -0.141 4.141 12 C 0.045 3.955 13 N -0.512 5.512 14 C 0.034 3.966 15 C -0.097 4.097 16 H 0.089 0.911 17 C -0.096 4.096 18 C -0.133 4.133 19 C -0.134 4.134 20 C 0.073 3.927 21 N -0.711 5.711 22 C 0.522 3.478 23 O -0.603 6.603 24 C 0.061 3.939 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.026 0.974 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.404 0.596 41 H 0.032 0.968 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.067 -13.744 -0.482 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.551 4.551 8 H 0.056 0.944 9 C -0.009 4.009 10 H 0.055 0.945 11 C -0.179 4.179 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.093 4.093 15 C -0.119 4.119 16 H 0.108 0.892 17 C -0.134 4.134 18 C -0.170 4.170 19 C -0.173 4.173 20 C -0.050 4.050 21 N -0.362 5.362 22 C 0.309 3.691 23 O -0.485 6.485 24 C -0.066 4.066 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.241 0.759 41 H 0.050 0.950 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.547 -13.166 -0.381 21.941 hybrid contribution -0.823 0.678 -1.288 1.672 sum 16.725 -12.488 -1.669 20.939 Atomic orbital electron populations 1.70041 1.08154 1.27951 1.52891 1.25788 0.95287 1.02778 0.94211 0.85957 0.79494 0.79113 0.79007 1.19508 1.22159 1.16822 1.21246 0.91024 0.93041 1.49801 0.94367 1.20003 0.93228 0.93802 0.93881 0.94532 1.22793 0.96654 0.98814 0.99642 1.22800 0.97937 0.94009 0.93571 1.64817 1.23931 1.05719 1.29141 1.23208 0.93071 0.94286 0.98770 1.21552 0.96926 0.99920 0.93504 0.89234 1.21158 0.96969 0.99415 0.95840 1.21325 1.02589 0.93844 0.99255 1.21789 0.99837 0.98543 0.97091 1.22670 0.95893 1.00572 0.85846 1.45969 1.59227 1.10333 1.20639 1.20887 0.76683 0.83262 0.88301 1.90709 1.45388 1.72973 1.39448 1.23044 0.87184 0.97171 0.99204 0.92608 0.92821 0.93272 0.94622 0.89937 0.84971 0.95536 0.92249 0.90159 0.90140 0.90501 0.91556 0.88096 0.86722 0.88979 0.75914 0.95009 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.94 44.52 24.72 68.60 1.70 46.21 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.24 -10.79 6.38 99.48 0.63 -10.15 16 7 C -0.51 -28.52 9.01 25.60 0.23 -28.29 16 8 H 0.04 2.33 8.03 -2.91 -0.02 2.30 16 9 C 0.01 0.46 2.47 -10.28 -0.03 0.44 16 10 H 0.04 1.68 7.37 -2.39 -0.02 1.66 16 11 C -0.14 -5.84 4.68 31.47 0.15 -5.70 16 12 C 0.04 1.54 5.74 86.45 0.50 2.03 16 13 N -0.51 -15.99 5.26 -882.66 -4.65 -20.63 16 14 C 0.03 0.83 2.39 86.30 0.21 1.04 16 15 C -0.10 -2.34 2.70 -11.29 -0.03 -2.37 16 16 H 0.09 2.52 6.86 -2.39 -0.02 2.50 16 17 C -0.10 -1.79 5.48 30.22 0.17 -1.62 16 18 C -0.13 -1.82 5.19 29.79 0.15 -1.66 16 19 C -0.13 -1.39 5.74 30.19 0.17 -1.22 16 20 C 0.07 0.88 6.36 86.24 0.55 1.43 16 21 N -0.71 -12.78 5.28 -462.16 -2.44 -15.22 16 22 C 0.52 13.65 6.46 88.05 0.57 14.22 16 23 O -0.60 -21.33 17.92 -3.04 -0.05 -21.39 16 24 C 0.06 2.24 5.96 86.71 0.52 2.75 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 26 H 0.05 2.17 5.94 -2.38 -0.01 2.15 16 27 H 0.05 2.21 7.79 -2.39 -0.02 2.20 16 28 H 0.04 1.22 7.57 -2.38 -0.02 1.20 16 29 H 0.08 2.59 7.79 -2.38 -0.02 2.57 16 30 H 0.13 2.58 2.83 -2.39 -0.01 2.58 16 31 H 0.03 0.72 7.11 -2.39 -0.02 0.70 16 32 H 0.06 1.12 7.87 -2.38 -0.02 1.10 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.15 5.52 -2.39 -0.01 1.14 16 36 H 0.07 0.76 8.05 -2.39 -0.02 0.74 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 1.34 3.63 -2.38 -0.01 1.33 16 40 H 0.40 6.29 8.91 -92.71 -0.83 5.46 16 41 H 0.03 1.21 7.92 -2.39 -0.02 1.19 16 42 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -70.69 307.59 -1.40 -72.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.13 Total: 15.11 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.61 Total: -17.53 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -6.79 Total: -94.49 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.70 Total: 46.21 kcal Total: -70.69 -1.40 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721148794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.571 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds