Wall clock time and date at job start Mon Mar 30 2020 04:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99650 * 2 1 4 4 H 1.48499 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46914 * 299.99620 * 3 2 1 6 6 H 1.48494 * 109.47306 * 59.99426 * 3 2 1 7 7 C 1.37873 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99478 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00185 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99921 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47065 * 179.97438 * 13 11 10 15 15 C 1.46902 * 111.00209 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.44842 * 32.40658 * 15 14 13 17 17 C 1.55912 * 110.50550 * 269.66726 * 15 14 13 18 18 C 1.56258 * 105.86576 * 247.92680 * 17 15 14 19 19 C 1.51736 * 101.91653 * 25.25350 * 18 17 15 20 20 H 1.08996 * 110.89791 * 71.60441 * 19 18 17 21 21 C 1.51735 * 122.51112 * 206.96103 * 19 18 17 22 22 C 1.56256 * 101.91757 * 153.03401 * 21 19 18 23 23 C 1.55917 * 105.86776 * 334.74882 * 22 21 19 24 24 C 1.49967 * 110.50646 * 155.00146 * 15 14 13 25 25 H 1.09001 * 108.49480 * 196.26184 * 24 15 14 26 26 H 0.97002 * 120.00862 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46973 * 60.00388 * 9 7 2 28 28 H 1.08993 * 109.47646 * 299.99796 * 9 7 2 29 29 H 0.97008 * 120.00094 * 359.97438 * 10 9 7 30 30 H 1.09001 * 109.47106 * 59.99992 * 13 11 10 31 31 H 1.08993 * 109.47384 * 299.99987 * 13 11 10 32 32 H 1.00905 * 110.99991 * 303.95861 * 14 13 11 33 33 H 1.08992 * 110.17320 * 7.02879 * 17 15 14 34 34 H 1.08997 * 110.17035 * 128.83701 * 17 15 14 35 35 H 1.09008 * 110.93803 * 143.40653 * 18 17 15 36 36 H 1.08993 * 110.94333 * 267.05652 * 18 17 15 37 37 H 1.08999 * 110.94081 * 34.87985 * 21 19 18 38 38 H 1.08998 * 110.94028 * 271.19064 * 21 19 18 39 39 H 1.09002 * 110.16575 * 215.64882 * 22 21 19 40 40 H 1.09000 * 110.17057 * 93.85388 * 22 21 19 41 41 H 1.09002 * 110.50422 * 112.07442 * 23 22 21 42 42 H 1.08996 * 110.50466 * 234.77122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7333 -6.0287 0.0033 14 7 1.9989 -7.3009 0.0032 15 6 2.9235 -8.4425 0.0044 16 1 3.8328 -8.1956 0.5524 17 6 3.2618 -8.8728 -1.4555 18 6 2.6057 -10.2777 -1.6497 19 6 1.4793 -10.2406 -0.6337 20 1 0.6868 -9.5654 -0.9564 21 6 0.9183 -11.4958 0.0081 22 6 0.3844 -10.9501 1.3715 23 6 1.2221 -9.6708 1.6761 24 6 2.2643 -9.6518 0.5979 25 1 3.0371 -10.3776 0.8511 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 3.1569 -3.4353 0.0021 30 1 3.3586 -5.9706 0.8943 31 1 3.3614 -5.9712 -0.8856 32 1 1.3615 -7.3505 0.7838 33 1 2.8408 -8.1601 -2.1646 34 1 4.3417 -8.9411 -1.5865 35 1 2.2146 -10.3885 -2.6611 36 1 3.3136 -11.0735 -1.4185 37 1 1.7021 -12.2367 0.1652 38 1 0.1069 -11.9100 -0.5903 39 1 0.5318 -11.6917 2.1567 40 1 -0.6722 -10.6963 1.2869 41 1 0.5953 -8.7810 1.6171 42 1 1.6896 -9.7454 2.6579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722095976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:22 Heat of formation + Delta-G solvation = -48.344616 kcal Electronic energy + Delta-G solvation = -20203.075076 eV Core-core repulsion = 17181.993678 eV Total energy + Delta-G solvation = -3021.081397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45885 -38.68177 -35.40696 -34.12357 -33.15895 -32.29296 -29.90238 -27.74213 -26.81514 -26.05764 -24.57655 -22.29447 -20.91286 -20.18255 -19.67495 -19.09992 -17.30251 -16.22447 -15.86501 -15.47993 -15.20822 -14.94204 -14.70491 -14.54885 -14.16520 -13.61911 -13.08229 -12.83802 -12.79829 -12.51380 -12.19792 -11.92857 -11.59623 -11.45356 -11.36467 -11.31827 -10.98710 -10.92640 -10.88349 -10.66849 -10.51650 -10.45923 -10.31098 -10.03497 -9.36786 -8.98492 -8.72742 -8.29778 -7.84009 -6.15781 -4.22629 3.23784 3.30772 3.33863 3.42798 3.86870 3.97044 4.31645 4.45888 4.54657 4.65026 4.92800 4.97443 5.10471 5.13460 5.20260 5.35570 5.40005 5.42259 5.49497 5.51455 5.54340 5.60305 5.66716 5.70227 5.76842 5.82013 5.91513 6.05001 6.08151 6.10297 6.23001 6.25892 6.47391 7.05073 7.34498 7.46843 7.50432 7.54227 7.69347 7.98532 8.66283 8.80591 9.15034 9.44289 10.94474 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042248 B = 0.003182 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.599155 B = 8797.874882 C = 9101.709416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.663 5.663 15 C 0.100 3.900 16 H 0.047 0.953 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.105 4.105 20 H 0.090 0.910 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.116 4.116 25 H 0.067 0.933 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.351 0.649 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -21.533 0.803 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.298 5.298 15 C -0.010 4.010 16 H 0.065 0.935 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.124 4.124 20 H 0.108 0.892 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.292 -21.546 0.138 22.447 hybrid contribution 1.282 1.149 0.925 1.954 sum 7.574 -20.397 1.062 21.784 Atomic orbital electron populations 1.69984 1.06103 1.27171 1.49027 1.24959 0.94913 0.99461 0.94741 0.86365 0.79825 0.82996 0.77746 1.19643 1.20791 1.20812 1.21271 0.93284 0.90485 1.53022 0.91877 1.19086 0.88315 0.81964 0.97684 1.46453 1.11043 1.06152 1.72796 1.20389 0.89570 0.84243 0.77786 1.90657 1.16712 1.84724 1.50124 1.21893 0.95681 0.89676 1.02059 1.60193 1.18547 0.99529 1.51524 1.21436 0.93877 0.89754 0.95982 0.93542 1.23040 0.99451 0.96564 0.96202 1.21908 0.96908 0.96857 0.98872 1.22405 0.97769 0.97258 0.94929 0.89159 1.21954 1.00120 0.96809 0.96039 1.22874 0.99753 0.96418 0.96706 1.21429 0.97190 0.98728 0.97557 1.21766 0.97904 0.97491 0.96359 0.91459 0.92509 0.95547 0.95647 0.77824 0.93023 0.88716 0.82726 0.90236 0.92148 0.91759 0.92002 0.91804 0.91817 0.92054 0.91498 0.90951 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.69 16 10 N -0.72 -15.17 5.55 -61.47 -0.34 -15.51 16 11 C 0.50 9.98 7.87 -10.98 -0.09 9.90 16 12 O -0.54 -13.28 16.20 5.56 0.09 -13.19 16 13 C 0.04 0.57 6.03 -4.97 -0.03 0.54 16 14 N -0.66 -9.26 5.87 -107.94 -0.63 -9.90 16 15 C 0.10 1.09 3.15 -67.66 -0.21 0.88 16 16 H 0.05 0.49 7.82 -51.93 -0.41 0.08 16 17 C -0.11 -1.17 6.73 -23.43 -0.16 -1.33 16 18 C -0.11 -1.00 6.60 -25.62 -0.17 -1.16 16 19 C -0.11 -1.05 2.96 -89.46 -0.27 -1.31 16 20 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.11 -0.96 6.60 -25.63 -0.17 -1.12 16 22 C -0.12 -1.05 6.94 -23.43 -0.16 -1.21 16 23 C -0.11 -1.09 6.40 -26.68 -0.17 -1.26 16 24 C -0.12 -1.15 2.29 -91.19 -0.21 -1.36 16 25 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.35 5.18 6.18 -39.29 -0.24 4.94 16 33 H 0.08 0.95 7.98 -51.93 -0.41 0.53 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.81 6.46 -51.93 -0.34 0.48 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -31.45 333.90 -9.39 -40.84 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.18 Total: 6.59 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.08 Total: -4.24 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.24 Total: -50.95 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.45 -9.39 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722095976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.500 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds