Wall clock time and date at job start Mon Mar 30 2020 04:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99650 * 2 1 4 4 H 1.48499 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46914 * 299.99620 * 3 2 1 6 6 H 1.48494 * 109.47306 * 59.99426 * 3 2 1 7 7 C 1.37873 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99478 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00185 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99921 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47065 * 179.97438 * 13 11 10 15 15 C 1.46902 * 111.00209 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.44842 * 32.40658 * 15 14 13 17 17 C 1.55912 * 110.50550 * 269.66726 * 15 14 13 18 18 C 1.56258 * 105.86576 * 247.92680 * 17 15 14 19 19 C 1.51736 * 101.91653 * 25.25350 * 18 17 15 20 20 H 1.08996 * 110.89791 * 71.60441 * 19 18 17 21 21 C 1.51735 * 122.51112 * 206.96103 * 19 18 17 22 22 C 1.56256 * 101.91757 * 153.03401 * 21 19 18 23 23 C 1.55917 * 105.86776 * 334.74882 * 22 21 19 24 24 C 1.49967 * 110.50646 * 155.00146 * 15 14 13 25 25 H 1.09001 * 108.49480 * 196.26184 * 24 15 14 26 26 H 0.97002 * 120.00862 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46973 * 60.00388 * 9 7 2 28 28 H 1.08993 * 109.47646 * 299.99796 * 9 7 2 29 29 H 0.97008 * 120.00094 * 359.97438 * 10 9 7 30 30 H 1.09001 * 109.47106 * 59.99992 * 13 11 10 31 31 H 1.08993 * 109.47384 * 299.99987 * 13 11 10 32 32 H 1.00905 * 110.99991 * 303.95861 * 14 13 11 33 33 H 1.08992 * 110.17320 * 7.02879 * 17 15 14 34 34 H 1.08997 * 110.17035 * 128.83701 * 17 15 14 35 35 H 1.09008 * 110.93803 * 143.40653 * 18 17 15 36 36 H 1.08993 * 110.94333 * 267.05652 * 18 17 15 37 37 H 1.08999 * 110.94081 * 34.87985 * 21 19 18 38 38 H 1.08998 * 110.94028 * 271.19064 * 21 19 18 39 39 H 1.09002 * 110.16575 * 215.64882 * 22 21 19 40 40 H 1.09000 * 110.17057 * 93.85388 * 22 21 19 41 41 H 1.09002 * 110.50422 * 112.07442 * 23 22 21 42 42 H 1.08996 * 110.50466 * 234.77122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7333 -6.0287 0.0033 14 7 1.9989 -7.3009 0.0032 15 6 2.9235 -8.4425 0.0044 16 1 3.8328 -8.1956 0.5524 17 6 3.2618 -8.8728 -1.4555 18 6 2.6057 -10.2777 -1.6497 19 6 1.4793 -10.2406 -0.6337 20 1 0.6868 -9.5654 -0.9564 21 6 0.9183 -11.4958 0.0081 22 6 0.3844 -10.9501 1.3715 23 6 1.2221 -9.6708 1.6761 24 6 2.2643 -9.6518 0.5979 25 1 3.0371 -10.3776 0.8511 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 3.1569 -3.4353 0.0021 30 1 3.3586 -5.9706 0.8943 31 1 3.3614 -5.9712 -0.8856 32 1 1.3615 -7.3505 0.7838 33 1 2.8408 -8.1601 -2.1646 34 1 4.3417 -8.9411 -1.5865 35 1 2.2146 -10.3885 -2.6611 36 1 3.3136 -11.0735 -1.4185 37 1 1.7021 -12.2367 0.1652 38 1 0.1069 -11.9100 -0.5903 39 1 0.5318 -11.6917 2.1567 40 1 -0.6722 -10.6963 1.2869 41 1 0.5953 -8.7810 1.6171 42 1 1.6896 -9.7454 2.6579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722095976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:22 Heat of formation + Delta-G solvation = -70.121766 kcal Electronic energy + Delta-G solvation = -20204.019404 eV Core-core repulsion = 17181.993678 eV Total energy + Delta-G solvation = -3022.025726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30631 -40.33407 -36.49977 -35.99645 -34.35458 -34.03834 -30.90375 -29.49974 -27.58439 -27.29850 -25.70994 -24.21815 -21.67978 -21.39409 -20.92959 -19.99281 -18.99038 -17.73644 -17.22428 -16.90772 -16.65199 -16.09164 -15.93354 -15.68886 -15.39208 -14.94334 -14.50749 -14.14093 -13.96769 -13.86591 -13.59441 -13.21442 -13.05620 -12.89332 -12.74711 -12.27707 -12.22519 -12.18910 -12.10317 -11.74034 -11.46303 -11.45318 -11.26365 -11.21351 -10.83945 -10.82056 -10.66000 -9.82929 -9.32372 -8.29719 -6.46534 1.42823 1.44134 1.57649 1.79006 2.29538 2.51062 3.05144 3.20096 3.30702 3.75100 3.84668 3.98145 4.17181 4.21286 4.34833 4.37140 4.39098 4.45254 4.64314 4.69317 4.70823 4.78513 4.81564 4.95569 5.05052 5.06584 5.11036 5.20837 5.23555 5.29025 5.31025 5.32444 5.42665 5.48818 5.53558 5.68965 5.69497 5.84519 6.09833 6.39328 6.65127 6.94318 7.23195 7.52053 8.82800 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042248 B = 0.003182 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.599155 B = 8797.874882 C = 9101.709416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.593 6.593 13 C 0.057 3.943 14 N -0.681 5.681 15 C 0.098 3.902 16 H 0.062 0.938 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.106 4.106 20 H 0.057 0.943 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.115 4.115 25 H 0.084 0.916 26 H 0.269 0.731 27 H -0.015 1.015 28 H -0.014 1.014 29 H 0.408 0.592 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.343 0.657 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 -22.412 1.071 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.279 3.721 12 O -0.474 6.474 13 C -0.075 4.075 14 N -0.316 5.316 15 C -0.011 4.011 16 H 0.080 0.920 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.125 4.125 20 H 0.076 0.924 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.133 4.133 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.494 -22.461 0.400 24.389 hybrid contribution 0.236 1.360 0.838 1.615 sum 9.730 -21.101 1.239 23.270 Atomic orbital electron populations 1.70147 1.08326 1.28513 1.50067 1.26095 0.95787 1.04002 0.93868 0.85092 0.79110 0.77221 0.77667 1.17531 1.20490 1.20435 1.21656 0.94331 0.90543 1.52733 0.89733 1.18518 0.88731 0.84460 0.93912 1.46188 1.11160 1.05532 1.73105 1.21481 0.89983 0.84971 0.75672 1.90635 1.19425 1.85418 1.51928 1.21810 0.94019 0.87251 1.04470 1.60213 1.19553 1.00238 1.51573 1.21572 0.93823 0.88859 0.96866 0.92015 1.23043 1.00591 0.96523 0.95031 1.21907 0.96809 0.96893 0.98522 1.22354 0.97218 0.97451 0.95442 0.92403 1.21947 1.00561 0.96399 0.95544 1.22882 0.99071 0.96306 0.97469 1.21440 0.97133 0.98295 0.98236 1.21770 0.98181 0.97290 0.96100 0.89743 0.92255 0.99742 0.99592 0.75590 0.89973 0.86397 0.83587 0.92386 0.90166 0.91977 0.90035 0.90166 0.91713 0.90499 0.92432 0.93236 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 42.54 29.54 68.60 2.03 44.57 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.47 9.28 25.60 0.24 -30.23 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.92 5.43 85.63 0.46 15.39 16 10 N -0.71 -30.33 5.55 -466.79 -2.59 -32.92 16 11 C 0.49 20.05 7.87 87.66 0.69 20.74 16 12 O -0.59 -30.32 16.20 -3.01 -0.05 -30.37 16 13 C 0.06 1.54 6.03 85.56 0.52 2.06 16 14 N -0.68 -18.66 5.87 -495.41 -2.91 -21.57 16 15 C 0.10 1.95 3.15 44.95 0.14 2.09 16 16 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 17 C -0.11 -2.09 6.73 32.74 0.22 -1.87 16 18 C -0.10 -1.71 6.60 31.31 0.21 -1.50 16 19 C -0.11 -2.01 2.96 -10.05 -0.03 -2.04 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.11 -1.66 6.60 31.31 0.21 -1.45 16 22 C -0.12 -1.96 6.94 32.74 0.23 -1.74 16 23 C -0.11 -2.12 6.40 30.63 0.20 -1.93 16 24 C -0.11 -2.06 2.29 -11.17 -0.03 -2.09 16 25 H 0.08 1.28 7.96 -2.39 -0.02 1.26 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.41 14.22 8.32 -92.70 -0.77 13.45 16 30 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 31 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.34 10.31 6.18 -89.69 -0.55 9.76 16 33 H 0.06 1.32 7.98 -2.39 -0.02 1.31 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.15 6.46 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -71.38 333.90 -0.05 -71.42 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.32 Total: 27.45 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 3.51 Total: -2.00 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -5.21 Total: -111.08 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.38 -0.05 -71.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722095976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.299 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds