Wall clock time and date at job start Mon Mar 30 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48497 * 109.47252 * 240.00383 * 3 2 1 5 5 H 1.48495 * 109.46818 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47046 * 120.00043 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47033 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00116 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00178 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99769 * 180.02562 * 12 11 10 15 15 H 1.08994 * 110.54683 * 28.35232 * 14 12 11 16 16 C 1.55197 * 110.74664 * 265.39509 * 14 12 11 17 17 C 1.54995 * 104.92976 * 265.42256 * 16 14 12 18 18 C 1.53261 * 104.18680 * 2.49445 * 17 16 14 19 19 H 1.08994 * 110.29228 * 90.28649 * 18 17 16 20 20 C 1.52248 * 113.90825 * 215.56733 * 18 17 16 21 21 C 1.53655 * 107.57724 * 177.25296 * 20 18 17 22 22 C 1.52824 * 110.60908 * 303.87697 * 21 20 18 23 23 C 1.53624 * 110.70131 * 53.74361 * 22 21 20 24 24 N 1.45659 * 107.80623 * 302.62638 * 23 22 21 25 25 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47044 * 59.99873 * 9 7 2 27 27 H 1.08997 * 109.46743 * 299.99811 * 9 7 2 28 28 H 1.09001 * 109.47304 * 60.00039 * 10 9 7 29 29 H 1.08998 * 109.47546 * 299.99956 * 10 9 7 30 30 H 0.97006 * 119.99335 * 0.02562 * 11 10 9 31 31 H 1.08999 * 110.34616 * 24.28074 * 16 14 12 32 32 H 1.08996 * 110.34712 * 146.56314 * 16 14 12 33 33 H 1.08998 * 110.48730 * 243.81785 * 17 16 14 34 34 H 1.08996 * 110.48656 * 121.16792 * 17 16 14 35 35 H 1.08997 * 109.84098 * 296.77600 * 20 18 17 36 36 H 1.09007 * 109.83802 * 57.67018 * 20 18 17 37 37 H 1.08994 * 109.24987 * 64.16179 * 21 20 18 38 38 H 1.08996 * 109.25219 * 183.58504 * 21 20 18 39 39 H 1.08999 * 109.23187 * 174.06657 * 22 21 20 40 40 H 1.09003 * 109.22660 * 293.47086 * 22 21 20 41 41 H 1.09002 * 109.78859 * 183.04954 * 23 22 21 42 42 H 1.08992 * 109.79071 * 62.20713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5126 -4.9309 -0.0012 12 6 2.1864 -6.0981 -0.0027 13 8 3.3992 -6.0981 -0.0040 14 6 1.4329 -7.4031 -0.0026 15 1 0.4632 -7.2850 -0.4861 16 6 1.2605 -7.9384 1.4439 17 6 2.4457 -8.9152 1.6522 18 6 3.2425 -8.8228 0.3462 19 1 4.0001 -8.0427 0.4200 20 6 3.8658 -10.1413 -0.0908 21 6 4.5643 -9.9003 -1.4381 22 6 3.5792 -9.3366 -2.4615 23 6 2.8808 -8.0842 -1.9103 24 7 2.2182 -8.4545 -0.6671 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8877 29 1 2.8711 -3.6041 -0.8922 30 1 0.5425 -4.9308 -0.0005 31 1 1.3146 -7.1186 2.1603 32 1 0.3122 -8.4668 1.5420 33 1 2.0807 -9.9307 1.8054 34 1 3.0582 -8.5975 2.4960 35 1 4.5946 -10.4695 0.6502 36 1 3.0892 -10.8975 -0.2058 37 1 5.3810 -9.1923 -1.2978 38 1 4.9666 -10.8433 -1.8081 39 1 4.1179 -9.0758 -3.3725 40 1 2.8292 -10.0931 -2.6922 41 1 2.1436 -7.7263 -2.6291 42 1 3.6181 -7.3051 -1.7178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907321138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:43 Heat of formation + Delta-G solvation = -51.879720 kcal Electronic energy + Delta-G solvation = -20853.146811 eV Core-core repulsion = 17831.912120 eV Total energy + Delta-G solvation = -3021.234691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81977 -38.18695 -35.04048 -34.78935 -32.87323 -32.25853 -30.05538 -29.10336 -27.54495 -24.87608 -23.10378 -22.48809 -21.19048 -20.90056 -20.00866 -19.58517 -16.94975 -16.42532 -15.99710 -15.38026 -15.10495 -14.77461 -14.56417 -14.36519 -14.13038 -13.71234 -13.36704 -13.05964 -12.71681 -12.50238 -12.31164 -12.28237 -11.63579 -11.44542 -11.24632 -11.09775 -10.98429 -10.73282 -10.68622 -10.63025 -10.43182 -10.34729 -10.25595 -10.06516 -9.62791 -9.33963 -8.57439 -8.38974 -8.10094 -6.11538 -4.14752 2.87938 3.29342 3.33279 3.36050 3.66121 3.95675 4.39696 4.48962 4.61096 4.87723 4.96032 5.00700 5.02076 5.15362 5.25334 5.31836 5.43211 5.49689 5.57377 5.73066 5.77428 5.80571 5.85775 5.90144 5.96511 6.00657 6.03068 6.13111 6.23048 6.30441 6.30821 6.41628 6.69966 6.87884 6.91149 7.12706 7.48316 7.58384 7.86063 7.97421 8.24856 8.60039 8.90850 9.50182 10.99965 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.003714 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.300387 B = 7536.419599 C = 7829.751562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.718 5.718 12 C 0.485 3.515 13 O -0.549 6.549 14 C 0.049 3.951 15 H 0.104 0.896 16 C -0.106 4.106 17 C -0.114 4.114 18 C 0.048 3.952 19 H 0.084 0.916 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.038 3.962 24 N -0.497 5.497 25 H 0.263 0.737 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 -20.235 -0.216 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.368 5.368 12 C 0.269 3.731 13 O -0.428 6.428 14 C -0.063 4.063 15 H 0.122 0.878 16 C -0.144 4.144 17 C -0.152 4.152 18 C -0.059 4.059 19 H 0.102 0.898 20 C -0.140 4.140 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.090 4.090 24 N -0.220 5.220 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.231 0.769 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.070 -20.499 -0.403 20.732 hybrid contribution 0.357 1.823 0.048 1.859 sum 3.426 -18.676 -0.355 18.991 Atomic orbital electron populations 1.69947 1.06086 1.27016 1.50222 1.24994 0.94898 0.99402 0.94933 0.86569 0.79531 0.82641 0.78790 1.20102 1.21190 1.20101 1.21011 0.93170 0.90431 1.51583 0.92374 1.19313 0.94169 0.91119 0.97820 1.21712 0.96072 0.81757 1.00600 1.46486 1.10585 1.06703 1.73002 1.21550 0.88673 0.86244 0.76635 1.90595 1.14025 1.87571 1.50579 1.22628 0.98127 0.88325 0.97224 0.87766 1.22453 0.99583 0.98974 0.93410 1.22131 0.96405 0.99604 0.97062 1.22698 0.94590 0.97912 0.90743 0.89819 1.21477 0.99325 0.96767 0.96462 1.21565 0.98193 1.00556 0.95427 1.21527 0.98147 0.97277 0.97789 1.22218 0.98002 0.97552 0.91253 1.64309 1.21709 1.32632 1.03388 0.92757 0.95982 0.95937 0.92682 0.92735 0.76864 0.90942 0.90056 0.91033 0.91371 0.91844 0.91265 0.92259 0.92196 0.91875 0.91633 0.91307 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 11 N -0.72 -12.46 5.56 -60.29 -0.33 -12.80 16 12 C 0.48 8.08 6.19 -10.99 -0.07 8.01 16 13 O -0.55 -10.83 12.40 5.56 0.07 -10.76 16 14 C 0.05 0.64 3.58 -67.59 -0.24 0.40 16 15 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.11 -1.18 6.60 -24.51 -0.16 -1.34 16 17 C -0.11 -1.25 6.65 -25.54 -0.17 -1.42 16 18 C 0.05 0.61 2.13 -66.95 -0.14 0.46 16 19 H 0.08 1.32 5.89 -51.93 -0.31 1.01 16 20 C -0.10 -1.07 5.64 -26.78 -0.15 -1.22 16 21 C -0.12 -1.24 5.95 -26.48 -0.16 -1.40 16 22 C -0.11 -1.19 6.06 -26.50 -0.16 -1.35 16 23 C 0.04 0.51 5.20 -4.17 -0.02 0.48 16 24 N -0.50 -6.43 4.81 -218.01 -1.05 -7.48 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.40 6.01 8.47 -40.82 -0.35 5.66 16 31 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.00 5.88 -51.93 -0.31 0.69 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -30.54 326.34 -9.77 -40.32 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.24 Total: 2.72 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.85 Total: -7.91 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.65 Total: -45.65 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.54 -9.77 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.564 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds