Wall clock time and date at job start Mon Mar 30 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00346 * 2 1 4 4 H 1.48497 * 109.47252 * 240.00383 * 3 2 1 5 5 H 1.48495 * 109.46818 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47046 * 120.00043 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47033 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00116 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00178 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99769 * 180.02562 * 12 11 10 15 15 H 1.08994 * 110.54683 * 28.35232 * 14 12 11 16 16 C 1.55197 * 110.74664 * 265.39509 * 14 12 11 17 17 C 1.54995 * 104.92976 * 265.42256 * 16 14 12 18 18 C 1.53261 * 104.18680 * 2.49445 * 17 16 14 19 19 H 1.08994 * 110.29228 * 90.28649 * 18 17 16 20 20 C 1.52248 * 113.90825 * 215.56733 * 18 17 16 21 21 C 1.53655 * 107.57724 * 177.25296 * 20 18 17 22 22 C 1.52824 * 110.60908 * 303.87697 * 21 20 18 23 23 C 1.53624 * 110.70131 * 53.74361 * 22 21 20 24 24 N 1.45659 * 107.80623 * 302.62638 * 23 22 21 25 25 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47044 * 59.99873 * 9 7 2 27 27 H 1.08997 * 109.46743 * 299.99811 * 9 7 2 28 28 H 1.09001 * 109.47304 * 60.00039 * 10 9 7 29 29 H 1.08998 * 109.47546 * 299.99956 * 10 9 7 30 30 H 0.97006 * 119.99335 * 0.02562 * 11 10 9 31 31 H 1.08999 * 110.34616 * 24.28074 * 16 14 12 32 32 H 1.08996 * 110.34712 * 146.56314 * 16 14 12 33 33 H 1.08998 * 110.48730 * 243.81785 * 17 16 14 34 34 H 1.08996 * 110.48656 * 121.16792 * 17 16 14 35 35 H 1.08997 * 109.84098 * 296.77600 * 20 18 17 36 36 H 1.09007 * 109.83802 * 57.67018 * 20 18 17 37 37 H 1.08994 * 109.24987 * 64.16179 * 21 20 18 38 38 H 1.08996 * 109.25219 * 183.58504 * 21 20 18 39 39 H 1.08999 * 109.23187 * 174.06657 * 22 21 20 40 40 H 1.09003 * 109.22660 * 293.47086 * 22 21 20 41 41 H 1.09002 * 109.78859 * 183.04954 * 23 22 21 42 42 H 1.08992 * 109.79071 * 62.20713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5126 -4.9309 -0.0012 12 6 2.1864 -6.0981 -0.0027 13 8 3.3992 -6.0981 -0.0040 14 6 1.4329 -7.4031 -0.0026 15 1 0.4632 -7.2850 -0.4861 16 6 1.2605 -7.9384 1.4439 17 6 2.4457 -8.9152 1.6522 18 6 3.2425 -8.8228 0.3462 19 1 4.0001 -8.0427 0.4200 20 6 3.8658 -10.1413 -0.0908 21 6 4.5643 -9.9003 -1.4381 22 6 3.5792 -9.3366 -2.4615 23 6 2.8808 -8.0842 -1.9103 24 7 2.2182 -8.4545 -0.6671 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8877 29 1 2.8711 -3.6041 -0.8922 30 1 0.5425 -4.9308 -0.0005 31 1 1.3146 -7.1186 2.1603 32 1 0.3122 -8.4668 1.5420 33 1 2.0807 -9.9307 1.8054 34 1 3.0582 -8.5975 2.4960 35 1 4.5946 -10.4695 0.6502 36 1 3.0892 -10.8975 -0.2058 37 1 5.3810 -9.1923 -1.2978 38 1 4.9666 -10.8433 -1.8081 39 1 4.1179 -9.0758 -3.3725 40 1 2.8292 -10.0931 -2.6922 41 1 2.1436 -7.7263 -2.6291 42 1 3.6181 -7.3051 -1.7178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907321138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:42 Heat of formation + Delta-G solvation = -72.439655 kcal Electronic energy + Delta-G solvation = -20854.038357 eV Core-core repulsion = 17831.912120 eV Total energy + Delta-G solvation = -3022.126237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96651 -39.45976 -36.60893 -35.88213 -34.84685 -33.23171 -31.78235 -30.17264 -28.65784 -26.72265 -24.16478 -23.75366 -22.67008 -22.10420 -21.14691 -20.72698 -18.64713 -18.02680 -17.27563 -16.59611 -16.50939 -16.32455 -16.06161 -15.42470 -15.34803 -15.03647 -14.50046 -14.32546 -14.12362 -13.96592 -13.47338 -13.26881 -13.22306 -12.95633 -12.58308 -12.57180 -12.37314 -12.29528 -11.96885 -11.70101 -11.61228 -11.58327 -11.49604 -11.29032 -11.20501 -11.14086 -10.63054 -10.05920 -9.29826 -8.26941 -6.38128 1.39439 1.41629 1.49813 1.54208 2.22378 2.42889 2.93506 3.07450 3.54201 3.69294 3.76881 4.03387 4.07971 4.11031 4.21455 4.40295 4.42156 4.43236 4.50409 4.55581 4.66297 4.78735 4.79686 4.84883 4.94447 4.96904 5.05107 5.07016 5.13031 5.17676 5.25684 5.26723 5.34868 5.44686 5.52899 5.53331 5.74731 5.89525 6.06114 6.12448 6.59003 6.74509 7.23062 7.31350 8.84548 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.003714 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.300387 B = 7536.419599 C = 7829.751562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.483 3.517 13 O -0.581 6.581 14 C 0.050 3.950 15 H 0.126 0.874 16 C -0.103 4.103 17 C -0.112 4.112 18 C 0.045 3.955 19 H 0.046 0.954 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.105 4.105 23 C 0.036 3.964 24 N -0.488 5.488 25 H 0.267 0.733 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -21.736 -0.099 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.018 3.982 11 N -0.366 5.366 12 C 0.270 3.730 13 O -0.461 6.461 14 C -0.062 4.062 15 H 0.144 0.856 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.063 4.063 19 H 0.064 0.936 20 C -0.135 4.135 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.092 4.092 24 N -0.211 5.211 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.719 -22.027 -0.286 22.196 hybrid contribution 0.475 2.268 -0.001 2.318 sum 3.194 -19.759 -0.287 20.017 Atomic orbital electron populations 1.70048 1.07515 1.28145 1.50743 1.25865 0.95810 1.03067 0.94282 0.85505 0.78347 0.78141 0.79115 1.19397 1.20379 1.19337 1.21430 0.93479 0.92038 1.51947 0.92541 1.19114 0.94154 0.91711 0.96331 1.21166 0.95027 0.82657 0.99308 1.46334 1.11122 1.05701 1.73460 1.22367 0.88463 0.87050 0.75149 1.90599 1.15782 1.88068 1.51677 1.22820 0.98317 0.85971 0.99124 0.85610 1.22526 1.01131 0.98944 0.91495 1.22171 0.96037 1.00881 0.95941 1.22714 0.93936 0.97971 0.91691 0.93631 1.21478 0.99797 0.95645 0.96617 1.21588 0.97592 1.01106 0.95544 1.21517 0.98446 0.96267 0.98071 1.22219 0.97334 0.97948 0.91713 1.64420 1.21634 1.31741 1.03290 0.92444 0.97402 0.97218 0.93896 0.94123 0.75409 0.91766 0.87118 0.88648 0.91671 0.90660 0.89990 0.94008 0.89964 0.91222 0.90349 0.91254 0.95609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.13 9.11 25.60 0.23 -30.90 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.14 6.27 5.61 86.38 0.48 6.75 16 11 N -0.72 -25.17 5.56 -463.06 -2.57 -27.74 16 12 C 0.48 16.29 6.19 87.66 0.54 16.83 16 13 O -0.58 -23.79 12.40 -3.03 -0.04 -23.83 16 14 C 0.05 1.24 3.58 44.89 0.16 1.40 16 15 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.10 -2.07 6.60 32.03 0.21 -1.85 16 17 C -0.11 -2.23 6.65 31.36 0.21 -2.03 16 18 C 0.04 1.08 2.13 44.40 0.09 1.18 16 19 H 0.05 1.48 5.89 -2.39 -0.01 1.46 16 20 C -0.10 -1.83 5.64 30.57 0.17 -1.66 16 21 C -0.12 -2.33 5.95 30.76 0.18 -2.14 16 22 C -0.11 -2.15 6.06 30.75 0.19 -1.96 16 23 C 0.04 0.96 5.20 86.75 0.45 1.41 16 24 N -0.49 -11.99 4.81 -843.66 -4.06 -16.05 16 25 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.41 12.33 8.47 -92.70 -0.79 11.54 16 31 H 0.06 1.41 7.88 -2.39 -0.02 1.39 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.03 0.87 5.88 -2.39 -0.01 0.86 16 Total: -1.00 -66.58 326.34 -0.61 -67.19 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.20 Total: 19.34 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 3.54 Total: -10.62 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -6.35 Total: -97.90 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.58 -0.61 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.245 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds