Wall clock time and date at job start Mon Mar 30 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.47027 * 125.64775 * 0.02562 * 14 12 11 16 16 C 1.54318 * 107.27329 * 181.02235 * 15 14 12 17 17 C 1.55165 * 102.94156 * 22.19670 * 16 15 14 18 18 H 1.08991 * 111.00521 * 82.60836 * 17 16 15 19 19 N 1.46898 * 111.00303 * 206.42535 * 17 16 15 20 20 C 1.47477 * 110.99634 * 197.57441 * 19 17 16 21 21 C 1.53516 * 87.93274 * 138.70366 * 20 19 17 22 22 C 1.47479 * 111.00051 * 293.54436 * 19 17 16 23 23 C 1.47424 * 125.64902 * 179.72080 * 14 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.08998 * 109.88328 * 300.44291 * 15 14 12 32 32 H 1.09005 * 109.87859 * 61.60939 * 15 14 12 33 33 H 1.08999 * 110.72200 * 140.55608 * 16 15 14 34 34 H 1.08999 * 110.72117 * 263.83347 * 16 15 14 35 35 H 1.09005 * 113.47548 * 253.46599 * 20 19 17 36 36 H 1.08994 * 113.48103 * 23.93355 * 20 19 17 37 37 H 1.08999 * 114.17128 * 220.32647 * 21 20 19 38 38 H 1.09004 * 114.17248 * 87.62069 * 21 20 19 39 39 H 1.09009 * 113.47306 * 336.06658 * 22 19 17 40 40 H 1.08998 * 113.48014 * 106.47018 * 22 19 17 41 41 H 1.09008 * 110.36292 * 274.74187 * 23 14 12 42 42 H 1.08992 * 110.36702 * 37.06760 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6521 -5.9109 0.0022 14 7 2.0105 -7.4032 0.0019 15 6 0.5984 -7.8129 0.0009 16 6 0.5689 -9.3556 0.0278 17 6 1.9588 -9.7196 0.6136 18 1 1.9518 -9.6604 1.7019 19 7 2.3873 -11.0509 0.1642 20 6 3.4696 -11.5740 1.0185 21 6 2.7774 -12.9431 0.9615 22 6 1.5157 -12.1025 0.7205 23 6 2.8536 -8.6126 -0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0452 -0.8885 31 1 0.0970 -7.4171 0.8841 32 1 0.1074 -7.4484 -0.9014 33 1 -0.2294 -9.7148 0.6773 34 1 0.4579 -9.7568 -0.9796 35 1 4.4475 -11.5616 0.5370 36 1 3.4850 -11.1365 2.0167 37 1 2.7793 -13.4840 1.9078 38 1 3.0732 -13.5578 0.1113 39 1 1.0095 -11.8058 1.6392 40 1 0.8368 -12.5370 -0.0132 41 1 3.1355 -8.8740 -1.0233 42 1 3.7419 -8.4583 0.6091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912902122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:23 Heat of formation + Delta-G solvation = -10.174452 kcal Electronic energy + Delta-G solvation = -19898.030230 eV Core-core repulsion = 16878.604015 eV Total energy + Delta-G solvation = -3019.426215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77753 -39.45307 -37.05668 -34.16770 -32.28289 -31.72293 -29.71589 -28.25244 -26.67620 -26.21737 -24.01883 -22.77316 -21.16842 -20.28466 -20.19894 -18.93603 -17.08291 -16.98068 -16.13995 -16.13633 -15.42118 -15.05066 -14.53856 -14.50717 -14.30242 -13.82926 -13.59156 -12.99083 -12.84375 -12.56209 -12.26317 -12.14955 -12.02294 -11.79795 -11.39371 -11.33898 -11.22682 -11.05681 -10.87353 -10.75933 -10.57821 -10.52145 -9.66317 -9.63748 -9.33803 -9.24406 -9.00342 -8.60222 -8.29543 -5.95422 -3.96748 2.92597 2.97442 3.38333 3.41421 3.45537 3.62291 3.91354 4.19952 4.31935 4.48666 4.51214 4.66415 4.83763 4.91195 5.00588 5.07377 5.11959 5.27903 5.33685 5.38605 5.40494 5.42568 5.51537 5.55332 5.67577 5.67934 5.74813 5.80413 5.83754 5.89743 6.21938 6.34290 6.66825 6.75855 6.96540 7.18723 7.59738 7.73495 7.86445 8.05373 8.43179 8.49557 9.10080 9.66968 11.16102 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.059146 B = 0.002839 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.288841 B = 9860.991206 C =10215.473307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.529 3.471 13 O -0.536 6.536 14 N -0.628 5.628 15 C 0.103 3.897 16 C -0.123 4.123 17 C 0.032 3.968 18 H 0.066 0.934 19 N -0.462 5.462 20 C -0.005 4.005 21 C -0.147 4.147 22 C 0.000 4.000 23 C 0.120 3.880 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -27.067 2.299 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.172 4.172 12 C 0.320 3.680 13 O -0.412 6.412 14 N -0.365 5.365 15 C -0.021 4.021 16 C -0.161 4.161 17 C -0.078 4.078 18 H 0.084 0.916 19 N -0.185 5.185 20 C -0.133 4.133 21 C -0.185 4.185 22 C -0.129 4.129 23 C -0.003 4.003 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.324 -26.598 1.571 26.646 hybrid contribution 0.136 0.956 0.904 1.323 sum 0.459 -25.642 2.475 25.765 Atomic orbital electron populations 1.69950 1.06033 1.26634 1.51181 1.25019 0.94861 0.99233 0.95399 0.86648 0.79568 0.83052 0.78689 1.20221 1.21337 1.20233 1.21242 0.93165 0.91025 1.50204 0.92625 1.19121 0.93945 0.91418 0.97100 1.21464 0.98667 0.91516 1.01701 1.21825 0.98017 0.93757 1.03615 1.21011 0.90162 0.82178 0.74679 1.90681 1.17359 1.83834 1.49349 1.48592 1.07241 1.05369 1.75322 1.21995 0.83155 0.94468 1.02456 1.22670 0.96096 0.94595 1.02724 1.23496 0.95815 0.90640 0.97863 0.91622 1.68955 1.05539 1.00162 1.43841 1.23827 0.97703 0.94890 0.96925 1.23121 0.96374 0.96283 1.02718 1.23726 0.96672 0.93103 0.99416 1.22013 0.93786 0.83095 1.01430 0.93024 0.96608 0.96625 0.92673 0.92721 0.89478 0.89406 0.91065 0.90821 0.90168 0.89536 0.89471 0.91156 0.90602 0.88833 0.91274 0.89566 0.90734 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.14 4.44 -26.73 -0.12 -2.26 16 11 C -0.13 -2.33 4.89 -27.89 -0.14 -2.47 16 12 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 13 O -0.54 -11.53 16.24 5.56 0.09 -11.44 16 14 N -0.63 -8.62 3.32 -170.38 -0.57 -9.18 16 15 C 0.10 1.03 6.48 -3.06 -0.02 1.01 16 16 C -0.12 -0.97 6.04 -24.89 -0.15 -1.12 16 17 C 0.03 0.29 2.32 -65.44 -0.15 0.13 16 18 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 19 N -0.46 -3.83 6.21 -233.91 -1.45 -5.28 16 20 C 0.00 -0.03 7.65 -7.55 -0.06 -0.09 16 21 C -0.15 -0.80 8.47 -26.20 -0.22 -1.02 16 22 C 0.00 0.00 7.17 -7.55 -0.05 -0.06 16 23 C 0.12 1.46 6.55 -2.41 -0.02 1.44 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.47 7.62 -51.93 -0.40 0.08 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.38 7.90 -51.92 -0.41 -0.03 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -33.76 340.64 -10.14 -43.91 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -7.50 Total: -4.97 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.56 Total: -8.78 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -1.28 Total: -41.12 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.76 -10.14 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912902122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.733 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds