Wall clock time and date at job start Mon Mar 30 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.47027 * 125.64775 * 0.02562 * 14 12 11 16 16 C 1.54318 * 107.27329 * 181.02235 * 15 14 12 17 17 C 1.55165 * 102.94156 * 22.19670 * 16 15 14 18 18 H 1.08991 * 111.00521 * 82.60836 * 17 16 15 19 19 N 1.46898 * 111.00303 * 206.42535 * 17 16 15 20 20 C 1.47477 * 110.99634 * 197.57441 * 19 17 16 21 21 C 1.53516 * 87.93274 * 138.70366 * 20 19 17 22 22 C 1.47479 * 111.00051 * 293.54436 * 19 17 16 23 23 C 1.47424 * 125.64902 * 179.72080 * 14 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.08998 * 109.88328 * 300.44291 * 15 14 12 32 32 H 1.09005 * 109.87859 * 61.60939 * 15 14 12 33 33 H 1.08999 * 110.72200 * 140.55608 * 16 15 14 34 34 H 1.08999 * 110.72117 * 263.83347 * 16 15 14 35 35 H 1.09005 * 113.47548 * 253.46599 * 20 19 17 36 36 H 1.08994 * 113.48103 * 23.93355 * 20 19 17 37 37 H 1.08999 * 114.17128 * 220.32647 * 21 20 19 38 38 H 1.09004 * 114.17248 * 87.62069 * 21 20 19 39 39 H 1.09009 * 113.47306 * 336.06658 * 22 19 17 40 40 H 1.08998 * 113.48014 * 106.47018 * 22 19 17 41 41 H 1.09008 * 110.36292 * 274.74187 * 23 14 12 42 42 H 1.08992 * 110.36702 * 37.06760 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6521 -5.9109 0.0022 14 7 2.0105 -7.4032 0.0019 15 6 0.5984 -7.8129 0.0009 16 6 0.5689 -9.3556 0.0278 17 6 1.9588 -9.7196 0.6136 18 1 1.9518 -9.6604 1.7019 19 7 2.3873 -11.0509 0.1642 20 6 3.4696 -11.5740 1.0185 21 6 2.7774 -12.9431 0.9615 22 6 1.5157 -12.1025 0.7205 23 6 2.8536 -8.6126 -0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0452 -0.8885 31 1 0.0970 -7.4171 0.8841 32 1 0.1074 -7.4484 -0.9014 33 1 -0.2294 -9.7148 0.6773 34 1 0.4579 -9.7568 -0.9796 35 1 4.4475 -11.5616 0.5370 36 1 3.4850 -11.1365 2.0167 37 1 2.7793 -13.4840 1.9078 38 1 3.0732 -13.5578 0.1113 39 1 1.0095 -11.8058 1.6392 40 1 0.8368 -12.5370 -0.0132 41 1 3.1355 -8.8740 -1.0233 42 1 3.7419 -8.4583 0.6091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912902122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:23 Heat of formation + Delta-G solvation = -33.266165 kcal Electronic energy + Delta-G solvation = -19899.031562 eV Core-core repulsion = 16878.604015 eV Total energy + Delta-G solvation = -3020.427547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55078 -40.53366 -38.12630 -36.14592 -34.09548 -32.91706 -30.54438 -29.86718 -27.77011 -26.75850 -25.70970 -23.97624 -22.18597 -21.73848 -20.80630 -20.18293 -18.56658 -18.05219 -17.82383 -16.89542 -16.57804 -16.51211 -16.15782 -15.52822 -15.14781 -14.97730 -14.55654 -14.40389 -13.89230 -13.80428 -13.77081 -13.43180 -13.10033 -12.97946 -12.63287 -12.55175 -12.51848 -12.44247 -12.05694 -11.86866 -11.68082 -11.57282 -11.49284 -11.42311 -11.29402 -10.83046 -10.54879 -9.91073 -9.73343 -8.20857 -6.30995 1.38949 1.42076 1.50168 1.55535 1.87266 2.41184 3.00570 3.11889 3.21006 3.59192 3.62968 3.81533 3.95290 3.99443 4.15645 4.18526 4.22385 4.29003 4.45029 4.51293 4.56728 4.71110 4.71935 4.75199 4.82214 4.86496 4.91398 4.94317 5.00933 5.05830 5.10718 5.16401 5.26794 5.28576 5.33470 5.52158 5.73291 5.84850 6.07537 6.25921 6.41305 6.83677 7.09365 7.37457 8.90544 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.059146 B = 0.002839 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.288841 B = 9860.991206 C =10215.473307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.122 4.122 12 C 0.527 3.473 13 O -0.587 6.587 14 N -0.622 5.622 15 C 0.092 3.908 16 C -0.111 4.111 17 C 0.043 3.957 18 H 0.070 0.930 19 N -0.480 5.480 20 C -0.012 4.012 21 C -0.137 4.137 22 C 0.002 3.998 23 C 0.116 3.884 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -28.311 2.706 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.161 4.161 12 C 0.318 3.682 13 O -0.467 6.467 14 N -0.356 5.356 15 C -0.030 4.030 16 C -0.149 4.149 17 C -0.067 4.067 18 H 0.088 0.912 19 N -0.203 5.203 20 C -0.141 4.141 21 C -0.175 4.175 22 C -0.126 4.126 23 C -0.007 4.007 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.728 -27.897 1.977 27.977 hybrid contribution 0.431 1.274 0.764 1.547 sum -0.297 -26.624 2.741 26.766 Atomic orbital electron populations 1.70053 1.07473 1.27904 1.51430 1.25907 0.95855 1.03057 0.94624 0.85550 0.78400 0.78354 0.79050 1.19478 1.20225 1.19425 1.21657 0.93323 0.92821 1.50970 0.93131 1.18997 0.94108 0.92212 0.95590 1.21177 0.97697 0.92937 1.00240 1.21637 0.97665 0.91309 1.05505 1.20867 0.89252 0.83454 0.74642 1.90658 1.19146 1.84815 1.52117 1.48560 1.09436 1.04549 1.73101 1.22349 0.80777 0.96229 1.03635 1.22659 0.96074 0.92731 1.03427 1.23379 0.95451 0.90114 0.97791 0.91210 1.68960 1.06697 1.00074 1.44591 1.23904 0.97296 0.96114 0.96746 1.23091 0.95412 0.95471 1.03538 1.23796 0.96782 0.92137 0.99913 1.22094 0.93942 0.83664 1.00979 0.92597 0.98020 0.97937 0.94209 0.94125 0.87443 0.87569 0.89637 0.89880 0.87430 0.89370 0.90289 0.90925 0.89093 0.88768 0.90207 0.88908 0.91556 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -32.90 9.11 25.60 0.23 -32.67 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.52 4.97 29.85 0.15 1.66 16 10 C -0.08 -3.78 4.44 30.59 0.14 -3.64 16 11 C -0.12 -4.22 4.89 29.85 0.15 -4.08 16 12 C 0.53 18.64 7.85 87.66 0.69 19.33 16 13 O -0.59 -26.07 16.24 -3.04 -0.05 -26.12 16 14 N -0.62 -16.56 3.32 -811.34 -2.70 -19.26 16 15 C 0.09 1.62 6.48 86.73 0.56 2.18 16 16 C -0.11 -1.43 6.04 31.78 0.19 -1.24 16 17 C 0.04 0.69 2.32 46.39 0.11 0.80 16 18 H 0.07 1.10 7.65 -2.39 -0.02 1.08 16 19 N -0.48 -7.13 6.21 -893.94 -5.56 -12.68 16 20 C -0.01 -0.15 7.65 83.57 0.64 0.49 16 21 C -0.14 -1.19 8.47 30.94 0.26 -0.93 16 22 C 0.00 0.02 7.17 83.57 0.60 0.62 16 23 C 0.12 2.81 6.55 86.93 0.57 3.38 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 28 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 29 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 0.89 7.62 -2.39 -0.02 0.87 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.61 7.90 -2.38 -0.02 0.59 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -73.87 340.64 -0.28 -74.16 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.96 Total: 6.13 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.75 Total: -13.41 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -7.97 Total: -88.46 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -73.87 -0.28 -74.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912902122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.890 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds