Wall clock time and date at job start Mon Mar 30 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 H 1.08998 * 109.47269 * 54.99948 * 3 2 1 5 5 C 1.50704 * 109.47030 * 175.00173 * 3 2 1 6 6 H 1.08003 * 119.99924 * 120.00161 * 5 3 2 7 7 C 1.37873 * 119.99892 * 299.99459 * 5 3 2 8 8 N 1.31513 * 119.99961 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46938 * 90.00037 * 9 7 5 11 11 H 1.48500 * 109.46879 * 210.00238 * 9 7 5 12 12 H 1.48504 * 109.46832 * 329.99899 * 9 7 5 13 13 N 1.46506 * 109.46772 * 294.99903 * 3 2 1 14 14 C 1.34774 * 119.99709 * 85.00258 * 13 3 2 15 15 O 1.21275 * 119.99986 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99582 * 179.97438 * 14 13 3 17 17 H 1.09004 * 110.44893 * 57.61350 * 16 14 13 18 18 C 1.55924 * 110.39852 * 179.97438 * 16 14 13 19 19 H 1.08999 * 115.92636 * 317.95287 * 18 16 14 20 20 C 1.55930 * 104.49739 * 189.06846 * 18 16 14 21 21 C 1.54574 * 104.64671 * 289.72450 * 20 18 16 22 22 C 1.55928 * 104.64401 * 359.97438 * 21 20 18 23 23 H 1.08998 * 115.92126 * 199.96491 * 22 21 20 24 24 C 1.56950 * 100.65271 * 326.22093 * 22 21 20 25 25 C 1.54574 * 110.40568 * 295.22095 * 16 14 13 26 26 H 1.09002 * 110.40368 * 0.02562 * 25 16 14 27 27 N 1.46904 * 110.40402 * 122.41676 * 25 16 14 28 28 H 1.08998 * 109.47208 * 59.99617 * 1 2 3 29 29 H 1.08997 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47063 * 300.00449 * 1 2 3 31 31 H 1.09004 * 109.47063 * 239.99551 * 2 1 3 32 32 H 1.09006 * 109.47128 * 120.00061 * 2 1 3 33 33 H 0.97008 * 119.99690 * 179.97438 * 8 7 5 34 34 H 0.97004 * 119.99659 * 264.99999 * 13 3 2 35 35 H 1.09003 * 110.39621 * 48.51664 * 20 18 16 36 36 H 1.08995 * 110.40251 * 170.81632 * 20 18 16 37 37 H 1.09001 * 110.40217 * 118.78369 * 21 20 18 38 38 H 1.08995 * 110.40773 * 241.20805 * 21 20 18 39 39 H 1.09000 * 112.02404 * 296.82808 * 24 22 21 40 40 H 1.08997 * 112.03207 * 170.30353 * 24 22 21 41 41 H 1.00897 * 111.00151 * 178.54875 * 27 25 16 42 42 H 1.00901 * 110.99742 * 302.50404 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8810 1.3817 10 1 6.4418 2.1139 2.0848 11 1 6.4395 -0.3101 2.1549 12 1 6.6136 0.8412 0.0277 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3391 2.6327 -0.4341 16 6 0.0368 3.3385 -2.6546 17 1 0.1032 2.6385 -3.4875 18 6 -1.4082 3.9136 -2.5424 19 1 -2.1386 3.2738 -2.0473 20 6 -1.7649 4.3588 -3.9936 21 6 -0.8720 5.5934 -4.2542 22 6 -0.0605 5.7784 -2.9357 23 1 0.3717 6.7663 -2.7768 24 6 -1.1169 5.3048 -1.8759 25 6 0.9300 4.5728 -2.9155 26 1 1.6576 4.6918 -2.1127 27 7 1.6115 4.4473 -4.2108 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0618 2.9495 34 1 2.2720 2.1229 -1.9979 35 1 -1.5315 3.5646 -4.7028 36 1 -2.8187 4.6290 -4.0600 37 1 -0.1997 5.4063 -5.0915 38 1 -1.4864 6.4726 -4.4483 39 1 -1.9988 5.9452 -1.8636 40 1 -0.6805 5.1988 -0.8828 41 1 2.1790 5.2595 -4.4010 42 1 2.1635 3.6035 -4.2486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079535022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:09 Heat of formation + Delta-G solvation = -45.120435 kcal Electronic energy + Delta-G solvation = -21614.354370 eV Core-core repulsion = 18593.412783 eV Total energy + Delta-G solvation = -3020.941586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66881 -38.18991 -34.98926 -33.41684 -32.27244 -31.07243 -29.75064 -28.52313 -27.14257 -26.09571 -23.17258 -22.19438 -20.55724 -19.70458 -19.30999 -18.42653 -17.30377 -16.03076 -15.83219 -15.52772 -15.24519 -14.71515 -14.48210 -14.09977 -13.77511 -13.05473 -12.77705 -12.65633 -12.17767 -11.99987 -11.57252 -11.30520 -11.26598 -11.13891 -10.99196 -10.86718 -10.80939 -10.64337 -10.55316 -10.51419 -10.31558 -10.20317 -10.00741 -9.61692 -9.05647 -8.83538 -8.62059 -8.49786 -7.78306 -6.13586 -4.23166 3.22149 3.29090 3.30418 3.44096 4.07953 4.33742 4.51541 4.63237 4.68460 4.83762 5.15238 5.17849 5.34773 5.42551 5.49164 5.56379 5.66349 5.76143 5.84798 5.99531 6.04604 6.15362 6.23290 6.28299 6.36886 6.40170 6.46945 6.48433 6.60963 6.67574 7.05036 7.13745 7.21120 7.38129 7.40266 7.49154 7.61427 7.74216 7.90453 8.18452 8.70054 8.78243 9.18921 9.44978 10.91607 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.005529 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.117405 B = 5063.375151 C = 5671.809339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.505 3.495 15 O -0.545 6.545 16 C -0.107 4.107 17 H 0.096 0.904 18 C -0.074 4.074 19 H 0.104 0.896 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.101 4.101 23 H 0.092 0.908 24 C -0.122 4.122 25 C 0.098 3.902 26 H 0.047 0.953 27 N -0.838 5.838 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.384 0.616 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.340 0.660 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 7.941 -12.045 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.290 3.710 15 O -0.424 6.424 16 C -0.129 4.129 17 H 0.114 0.886 18 C -0.092 4.092 19 H 0.122 0.878 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.120 4.120 23 H 0.110 0.890 24 C -0.160 4.160 25 C -0.014 4.014 26 H 0.065 0.935 27 N -0.368 5.368 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.215 0.785 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.657 7.763 -11.481 15.376 hybrid contribution 2.320 -0.103 0.340 2.347 sum -4.338 7.661 -11.141 14.200 Atomic orbital electron populations 1.21831 0.98338 0.97967 1.01240 1.21925 0.92631 0.99882 1.02156 1.18748 0.94041 0.89163 0.81175 0.93457 1.21220 0.90808 1.38989 1.06186 0.92325 1.24882 0.98510 0.94822 0.95426 1.69898 1.35083 1.37577 1.09334 0.86481 0.84986 0.77661 0.78157 1.20609 1.21034 1.19912 1.46498 1.14784 1.56210 1.18250 1.20342 0.82604 0.79063 0.89019 1.90648 1.51407 1.59902 1.40442 1.22537 0.96775 0.96881 0.96742 0.88554 1.23315 0.94569 0.96118 0.95241 0.87814 1.22587 0.98718 0.97990 0.96234 1.22502 0.97695 0.96746 0.98049 1.23608 0.95551 0.96496 0.96329 0.88964 1.23556 0.98087 0.95950 0.98429 1.22300 0.94768 0.94331 0.90003 0.93548 1.58868 1.37673 1.07795 1.32490 0.94253 0.95936 0.93187 0.95157 0.88388 0.92574 0.78470 0.91857 0.92436 0.89582 0.93204 0.91376 0.90742 0.84782 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.10 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 13 N -0.71 -14.41 5.00 -54.93 -0.27 -14.68 16 14 C 0.50 9.76 5.24 -10.98 -0.06 9.70 16 15 O -0.55 -12.41 12.69 5.56 0.07 -12.34 16 16 C -0.11 -1.58 2.46 -89.38 -0.22 -1.80 16 17 H 0.10 1.36 7.65 -51.93 -0.40 0.96 16 18 C -0.07 -1.03 4.07 -85.33 -0.35 -1.38 16 19 H 0.10 1.59 7.85 -51.93 -0.41 1.18 16 20 C -0.12 -1.36 6.21 -24.34 -0.15 -1.51 16 21 C -0.11 -1.22 6.09 -24.34 -0.15 -1.37 16 22 C -0.10 -1.20 5.06 -85.29 -0.43 -1.63 16 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 24 C -0.12 -1.66 6.28 -22.43 -0.14 -1.81 16 25 C 0.10 1.26 3.35 -65.26 -0.22 1.04 16 26 H 0.05 0.70 7.72 -51.93 -0.40 0.30 16 27 N -0.84 -8.64 7.51 -2.59 -0.02 -8.66 16 28 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.38 6.86 8.54 -40.82 -0.35 6.51 16 35 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.94 6.70 -51.93 -0.35 0.60 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 41 H 0.34 3.01 9.08 -39.29 -0.36 2.65 16 42 H 0.34 3.37 9.03 -39.29 -0.35 3.02 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -28.79 320.31 -8.78 -37.58 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.90 Total: 12.57 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.09 Total: -10.74 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.33 Total: -47.37 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.79 -8.78 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079535022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.545 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds