Wall clock time and date at job start Mon Mar 30 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 H 1.08998 * 109.47269 * 54.99948 * 3 2 1 5 5 C 1.50704 * 109.47030 * 175.00173 * 3 2 1 6 6 H 1.08003 * 119.99924 * 120.00161 * 5 3 2 7 7 C 1.37873 * 119.99892 * 299.99459 * 5 3 2 8 8 N 1.31513 * 119.99961 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46938 * 90.00037 * 9 7 5 11 11 H 1.48500 * 109.46879 * 210.00238 * 9 7 5 12 12 H 1.48504 * 109.46832 * 329.99899 * 9 7 5 13 13 N 1.46506 * 109.46772 * 294.99903 * 3 2 1 14 14 C 1.34774 * 119.99709 * 85.00258 * 13 3 2 15 15 O 1.21275 * 119.99986 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99582 * 179.97438 * 14 13 3 17 17 H 1.09004 * 110.44893 * 57.61350 * 16 14 13 18 18 C 1.55924 * 110.39852 * 179.97438 * 16 14 13 19 19 H 1.08999 * 115.92636 * 317.95287 * 18 16 14 20 20 C 1.55930 * 104.49739 * 189.06846 * 18 16 14 21 21 C 1.54574 * 104.64671 * 289.72450 * 20 18 16 22 22 C 1.55928 * 104.64401 * 359.97438 * 21 20 18 23 23 H 1.08998 * 115.92126 * 199.96491 * 22 21 20 24 24 C 1.56950 * 100.65271 * 326.22093 * 22 21 20 25 25 C 1.54574 * 110.40568 * 295.22095 * 16 14 13 26 26 H 1.09002 * 110.40368 * 0.02562 * 25 16 14 27 27 N 1.46904 * 110.40402 * 122.41676 * 25 16 14 28 28 H 1.08998 * 109.47208 * 59.99617 * 1 2 3 29 29 H 1.08997 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47063 * 300.00449 * 1 2 3 31 31 H 1.09004 * 109.47063 * 239.99551 * 2 1 3 32 32 H 1.09006 * 109.47128 * 120.00061 * 2 1 3 33 33 H 0.97008 * 119.99690 * 179.97438 * 8 7 5 34 34 H 0.97004 * 119.99659 * 264.99999 * 13 3 2 35 35 H 1.09003 * 110.39621 * 48.51664 * 20 18 16 36 36 H 1.08995 * 110.40251 * 170.81632 * 20 18 16 37 37 H 1.09001 * 110.40217 * 118.78369 * 21 20 18 38 38 H 1.08995 * 110.40773 * 241.20805 * 21 20 18 39 39 H 1.09000 * 112.02404 * 296.82808 * 24 22 21 40 40 H 1.08997 * 112.03207 * 170.30353 * 24 22 21 41 41 H 1.00897 * 111.00151 * 178.54875 * 27 25 16 42 42 H 1.00901 * 110.99742 * 302.50404 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8810 1.3817 10 1 6.4418 2.1139 2.0848 11 1 6.4395 -0.3101 2.1549 12 1 6.6136 0.8412 0.0277 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3391 2.6327 -0.4341 16 6 0.0368 3.3385 -2.6546 17 1 0.1032 2.6385 -3.4875 18 6 -1.4082 3.9136 -2.5424 19 1 -2.1386 3.2738 -2.0473 20 6 -1.7649 4.3588 -3.9936 21 6 -0.8720 5.5934 -4.2542 22 6 -0.0605 5.7784 -2.9357 23 1 0.3717 6.7663 -2.7768 24 6 -1.1169 5.3048 -1.8759 25 6 0.9300 4.5728 -2.9155 26 1 1.6576 4.6918 -2.1127 27 7 1.6115 4.4473 -4.2108 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0618 2.9495 34 1 2.2720 2.1229 -1.9979 35 1 -1.5315 3.5646 -4.7028 36 1 -2.8187 4.6290 -4.0600 37 1 -0.1997 5.4063 -5.0915 38 1 -1.4864 6.4726 -4.4483 39 1 -1.9988 5.9452 -1.8636 40 1 -0.6805 5.1988 -0.8828 41 1 2.1790 5.2595 -4.4010 42 1 2.1635 3.6035 -4.2486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079535022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:09 Heat of formation + Delta-G solvation = -64.604760 kcal Electronic energy + Delta-G solvation = -21615.199274 eV Core-core repulsion = 18593.412783 eV Total energy + Delta-G solvation = -3021.786490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88403 -39.73207 -36.86494 -34.58279 -34.01750 -32.85034 -31.00905 -29.50595 -28.94205 -27.32910 -25.06602 -23.48447 -22.03204 -21.15879 -20.83648 -19.56991 -18.87685 -17.67839 -17.24984 -16.85934 -16.53428 -16.29566 -15.77284 -15.63785 -15.16047 -14.61329 -14.43059 -13.90228 -13.73822 -13.49548 -13.19480 -13.11913 -12.90426 -12.72198 -12.44486 -12.18559 -12.15858 -12.09002 -11.84249 -11.70833 -11.63231 -11.56426 -11.54744 -11.08518 -11.02497 -10.58743 -10.37370 -9.62792 -9.52702 -8.17804 -6.35504 1.42585 1.42666 1.53371 1.88595 2.34640 2.66220 3.11523 3.43874 3.57979 3.59225 3.84648 4.06998 4.16816 4.34931 4.46237 4.47672 4.51701 4.55189 4.59690 4.72803 4.76496 4.80161 4.94178 5.00135 5.05307 5.13016 5.20758 5.24181 5.30671 5.38565 5.42259 5.51276 5.54339 5.62950 5.70058 5.78126 5.92251 6.15931 6.23130 6.63220 6.72962 7.02306 7.32325 7.62463 8.87472 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.005529 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.117405 B = 5063.375151 C = 5671.809339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.706 5.706 14 C 0.501 3.499 15 O -0.584 6.584 16 C -0.097 4.097 17 H 0.111 0.889 18 C -0.082 4.082 19 H 0.084 0.916 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.094 4.094 23 H 0.108 0.892 24 C -0.126 4.126 25 C 0.105 3.895 26 H 0.021 0.979 27 N -0.827 5.827 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.265 0.735 34 H 0.398 0.602 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.352 0.648 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 8.855 -14.806 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.465 6.465 16 C -0.119 4.119 17 H 0.129 0.871 18 C -0.101 4.101 19 H 0.102 0.898 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.113 4.113 23 H 0.126 0.874 24 C -0.164 4.164 25 C -0.008 4.008 26 H 0.039 0.961 27 N -0.358 5.358 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.166 0.834 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.982 8.694 -14.293 17.767 hybrid contribution 2.061 -0.376 1.246 2.438 sum -3.921 8.318 -13.046 15.962 Atomic orbital electron populations 1.21663 0.97013 0.99067 1.00189 1.21777 0.93721 0.99276 1.01174 1.18319 0.93543 0.89078 0.81504 0.98820 1.21555 0.91442 1.38884 1.06618 0.91254 1.25770 1.03276 0.94370 0.95038 1.70055 1.37070 1.38350 1.09876 0.85391 0.79174 0.77420 0.78622 1.20496 1.20941 1.18395 1.46264 1.15705 1.56243 1.17221 1.21204 0.81549 0.78141 0.90272 1.90632 1.52410 1.61053 1.42371 1.22508 0.97816 0.97563 0.93972 0.87144 1.23335 0.93577 0.95919 0.97297 0.89792 1.22547 0.99800 0.98439 0.93883 1.22468 0.97557 0.96944 0.97110 1.23646 0.94695 0.96612 0.96308 0.87418 1.23550 0.99259 0.96400 0.97163 1.22131 0.94358 0.93779 0.90496 0.96149 1.58823 1.38072 1.08712 1.30196 0.93777 0.93621 0.95697 0.94139 0.91115 0.92622 0.76792 0.91402 0.91090 0.88981 0.91542 0.89786 0.94321 0.83357 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.52 71.98 0.61 -5.00 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.42 2.24 44.24 0.10 14.51 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -28.93 8.73 25.60 0.22 -28.70 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -52.67 11.29 21.45 0.24 -52.43 16 9 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 13 N -0.71 -29.10 5.00 -446.09 -2.23 -31.33 16 14 C 0.50 19.81 5.24 87.66 0.46 20.27 16 15 O -0.58 -27.88 12.69 -3.01 -0.04 -27.92 16 16 C -0.10 -2.78 2.46 -9.99 -0.02 -2.80 16 17 H 0.11 2.88 7.65 -2.38 -0.02 2.86 16 18 C -0.08 -2.25 4.07 -7.37 -0.03 -2.28 16 19 H 0.08 2.62 7.85 -2.39 -0.02 2.60 16 20 C -0.11 -2.21 6.21 32.14 0.20 -2.01 16 21 C -0.10 -1.87 6.09 32.14 0.20 -1.67 16 22 C -0.09 -2.03 5.06 -7.34 -0.04 -2.06 16 23 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 24 C -0.13 -3.36 6.28 33.38 0.21 -3.15 16 25 C 0.10 2.54 3.35 46.50 0.16 2.69 16 26 H 0.02 0.61 7.72 -2.39 -0.02 0.59 16 27 N -0.83 -14.67 7.51 -162.12 -1.22 -15.88 16 28 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.02 1.23 7.85 -2.38 -0.02 1.21 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 3.95 5.95 -2.38 -0.01 3.94 16 33 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 34 H 0.40 14.03 8.54 -92.71 -0.79 13.23 16 35 H 0.07 1.34 7.83 -2.39 -0.02 1.32 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.62 6.70 -2.39 -0.02 1.60 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.29 7.65 -2.39 -0.02 1.28 16 41 H 0.35 5.09 9.08 -89.70 -0.81 4.27 16 42 H 0.35 5.86 9.03 -89.69 -0.81 5.05 16 Total: -1.00 -64.54 320.31 0.08 -64.46 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -1.38 Total: 33.85 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 2.68 Total: -14.76 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.21 Total: -99.64 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.04 Total: -27.92 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -64.54 0.08 -64.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079535022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.144 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds