Wall clock time and date at job start Mon Mar 30 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45676 * 2 1 4 4 C 1.53035 * 109.46170 * 119.97855 * 2 1 3 5 5 C 1.53120 * 109.27675 * 179.19718 * 4 2 1 6 6 C 1.53120 * 109.16066 * 302.33888 * 5 4 2 7 7 H 1.08997 * 109.50377 * 177.59903 * 6 5 4 8 8 C 1.50704 * 109.53731 * 297.69859 * 6 5 4 9 9 N 1.34774 * 119.99900 * 293.70634 * 8 6 5 10 10 O 1.21281 * 119.99649 * 113.70543 * 8 6 5 11 11 C 1.53036 * 109.27599 * 57.65819 * 6 5 4 12 12 N 1.46844 * 109.46133 * 240.03064 * 2 1 3 13 13 C 1.46898 * 111.00640 * 54.14326 * 12 2 1 14 14 C 1.52995 * 109.47415 * 191.63427 * 13 12 2 15 15 C 1.50696 * 115.55175 * 54.22906 * 14 13 12 16 16 H 1.07999 * 120.00315 * 215.43998 * 15 14 13 17 17 C 1.37875 * 119.99862 * 35.44616 * 15 14 13 18 18 N 1.31511 * 120.00276 * 13.45647 * 17 15 14 19 19 Si 1.86804 * 119.99689 * 193.73663 * 17 15 14 20 20 H 1.48495 * 109.47153 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46946 * 120.00135 * 19 17 15 22 22 H 1.48501 * 109.46700 * 239.99467 * 19 17 15 23 23 C 1.53005 * 117.49679 * 199.90286 * 14 13 12 24 24 C 1.53001 * 117.49710 * 268.55735 * 14 13 12 25 25 H 1.09005 * 109.47327 * 174.45523 * 1 2 3 26 26 H 1.08998 * 109.47552 * 294.45844 * 1 2 3 27 27 H 1.09007 * 109.47282 * 54.46043 * 1 2 3 28 28 H 1.08992 * 109.50605 * 59.25005 * 4 2 1 29 29 H 1.09009 * 109.50056 * 299.13396 * 4 2 1 30 30 H 1.08998 * 109.52004 * 182.43502 * 5 4 2 31 31 H 1.09003 * 109.52267 * 62.24859 * 5 4 2 32 32 H 0.97007 * 119.99988 * 0.02562 * 9 8 6 33 33 H 0.96995 * 119.99779 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46751 * 180.80628 * 11 6 5 35 35 H 1.09004 * 109.46599 * 60.83148 * 11 6 5 36 36 H 1.08998 * 109.46785 * 71.63232 * 13 12 2 37 37 H 1.09003 * 109.47002 * 311.63875 * 13 12 2 38 38 H 0.97002 * 120.00282 * 184.22950 * 18 17 15 39 39 H 1.09003 * 117.49594 * 215.00526 * 23 14 13 40 40 H 1.09000 * 117.49872 * 0.02562 * 23 14 13 41 41 H 1.08998 * 117.49926 * 359.97438 * 24 14 13 42 42 H 1.08996 * 117.49943 * 144.97675 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7361 1.2355 6 6 4.0548 -1.4188 -0.0468 7 1 5.1439 -1.3948 -0.0832 8 6 3.5823 -2.8498 -0.0650 9 7 4.0570 -3.7278 0.8406 10 8 2.7748 -3.2112 -0.8946 11 6 3.4865 -0.6777 -1.2591 12 7 2.0192 -0.6916 -1.1994 13 6 1.4373 -0.1105 -2.4166 14 6 1.7321 -1.0230 -3.6088 15 6 1.3065 -2.4597 -3.4485 16 1 1.9043 -3.2509 -3.8763 17 6 0.1539 -2.7641 -2.7558 18 7 -0.7087 -1.8148 -2.4651 19 14 -0.1788 -4.5235 -2.2236 20 1 0.9402 -5.3941 -2.6649 21 1 -0.2964 -4.5792 -0.7443 22 1 -1.4452 -4.9956 -2.8389 23 6 1.6382 -0.4101 -5.0076 24 6 3.0062 -0.7488 -4.4101 25 1 -0.3634 -1.0229 -0.0993 26 1 -0.3634 0.4255 0.9354 27 1 -0.3634 0.5974 -0.8363 28 1 1.6658 -1.7447 1.2575 29 1 1.6894 -0.1982 2.1399 30 1 3.9379 -1.2863 2.1019 31 1 3.9456 0.2870 1.2672 32 1 4.7026 -3.4385 1.5044 33 1 3.7532 -4.6488 0.8287 34 1 3.8174 -1.1698 -2.1736 35 1 3.8403 0.3533 -1.2532 36 1 1.8738 0.8723 -2.5945 37 1 0.3589 -0.0119 -2.2924 38 1 -1.4888 -2.0171 -1.9253 39 1 1.2686 -1.0462 -5.8119 40 1 1.3669 0.6432 -5.0784 41 1 3.6342 0.0819 -4.0883 42 1 3.5369 -1.6075 -4.8211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:07 Heat of formation + Delta-G solvation = 2.316362 kcal Electronic energy + Delta-G solvation = -22877.584240 eV Core-core repulsion = 19858.699667 eV Total energy + Delta-G solvation = -3018.884573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.68374 -37.51308 -35.92857 -33.22382 -32.26221 -31.65070 -31.39277 -26.89681 -25.62328 -24.91975 -22.58513 -22.11282 -21.00433 -19.88462 -18.64148 -18.54642 -16.62858 -16.04342 -15.64354 -15.19419 -14.41946 -14.19339 -13.98043 -13.73349 -13.42300 -13.21796 -12.73808 -12.44209 -12.18547 -11.80326 -11.41462 -11.22352 -11.14554 -10.98979 -10.84511 -10.62470 -10.39842 -10.26628 -10.19253 -10.00102 -9.81251 -9.47559 -8.98539 -8.93749 -8.82218 -8.74555 -8.32003 -7.63377 -6.87175 -5.64308 -3.54783 3.50298 3.62467 3.66658 3.76573 4.11861 4.81047 4.84610 5.10731 5.24191 5.25970 5.42599 5.52149 5.78251 5.85257 5.90627 5.96397 6.03425 6.11595 6.23046 6.27676 6.29706 6.38708 6.50732 6.59424 6.65716 6.72071 6.76406 6.84604 6.87880 7.03349 7.12112 7.31994 7.38512 7.41173 7.52770 7.84199 7.96322 8.31541 8.41915 8.47290 8.83982 9.14866 9.32577 10.04156 11.41899 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.011064 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.529904 B = 2530.040826 C = 2914.973694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.085 3.915 3 H 0.015 0.985 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.103 4.103 7 H 0.081 0.919 8 C 0.499 3.501 9 N -0.878 5.878 10 O -0.450 6.450 11 C 0.075 3.925 12 N -0.473 5.473 13 C 0.097 3.903 14 C 0.078 3.922 15 C -0.440 4.440 16 H 0.047 0.953 17 C 0.103 3.897 18 N -0.882 5.882 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.305 1.305 23 C -0.212 4.212 24 C -0.222 4.222 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.387 0.613 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.013 0.987 36 H -0.022 1.022 37 H 0.124 0.876 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 2.907 9.571 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.033 0.967 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.125 4.125 7 H 0.100 0.900 8 C 0.281 3.719 9 N -0.445 5.445 10 O -0.317 6.317 11 C -0.054 4.054 12 N -0.196 5.196 13 C -0.029 4.029 14 C 0.077 3.923 15 C -0.476 4.476 16 H 0.065 0.935 17 C -0.099 4.099 18 N -0.521 5.521 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.233 1.233 23 C -0.250 4.250 24 C -0.259 4.259 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.214 0.786 33 H 0.221 0.779 34 H 0.109 0.891 35 H 0.031 0.969 36 H -0.004 1.004 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.598 2.393 8.973 11.999 hybrid contribution 0.608 -0.282 0.754 1.009 sum 8.206 2.111 9.728 12.900 Atomic orbital electron populations 1.21813 0.94018 1.04114 0.99205 1.21505 0.96051 0.93469 0.91368 0.96705 1.21637 0.94231 1.01901 0.97165 1.21527 0.97113 1.00091 0.95742 1.21406 0.99937 0.93474 0.97713 0.90038 1.20490 0.82380 0.87452 0.81596 1.44055 1.49859 1.13682 1.36911 1.91038 1.28486 1.77820 1.34327 1.21886 0.90402 0.95862 0.97209 1.61614 1.03572 1.53634 1.00802 1.21845 1.02708 0.90121 0.88245 1.18927 0.91588 0.95502 0.86312 1.20022 1.05929 0.88539 1.33139 0.93512 1.24440 0.94935 0.95838 0.94643 1.69904 1.11473 1.32322 1.38401 0.86543 0.75947 0.86805 0.78211 1.20497 1.21603 1.23302 1.22991 1.00452 0.98722 1.02858 1.22928 0.91415 1.01027 1.10526 0.90429 0.94910 0.92165 0.91176 0.92552 0.92335 0.91864 0.78621 0.77860 0.89144 0.96879 1.00390 0.85875 0.93962 0.90652 0.92316 0.92273 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.29 37.16 0.31 -2.31 16 2 C 0.08 1.60 2.44 -67.73 -0.17 1.43 16 3 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 4 C -0.11 -1.79 5.12 -26.65 -0.14 -1.93 16 5 C -0.11 -1.42 5.48 -26.61 -0.15 -1.57 16 6 C -0.10 -1.59 3.01 -91.69 -0.28 -1.87 16 7 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.50 8.77 6.12 -10.98 -0.07 8.70 16 9 N -0.88 -11.28 8.85 31.22 0.28 -11.00 16 10 O -0.45 -10.49 14.36 5.56 0.08 -10.41 16 11 C 0.08 1.44 4.23 -3.83 -0.02 1.42 16 12 N -0.47 -10.12 2.78 -226.69 -0.63 -10.75 16 13 C 0.10 2.31 3.84 -3.83 -0.01 2.30 16 14 C 0.08 1.96 1.43 -155.66 -0.22 1.74 16 15 C -0.44 -12.38 7.81 -34.44 -0.27 -12.65 16 16 H 0.05 1.40 7.85 -52.49 -0.41 0.98 16 17 C 0.10 2.88 5.13 -17.82 -0.09 2.79 16 18 N -0.88 -24.46 9.68 55.43 0.54 -23.93 16 19 Si 0.89 23.69 28.87 -169.99 -4.91 18.78 16 20 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16 23 C -0.21 -5.04 9.96 -26.69 -0.27 -5.30 16 24 C -0.22 -5.04 8.22 -26.69 -0.22 -5.26 16 25 H 0.08 1.75 7.20 -51.93 -0.37 1.38 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.24 6.41 -51.92 -0.33 0.91 16 28 H 0.07 1.31 7.36 -51.93 -0.38 0.92 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.39 3.55 8.68 -40.82 -0.35 3.19 16 33 H 0.39 4.93 8.93 -40.82 -0.36 4.57 16 34 H 0.09 1.94 5.84 -51.93 -0.30 1.63 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H -0.02 -0.50 8.05 -51.93 -0.42 -0.92 16 37 H 0.12 3.16 3.63 -51.93 -0.19 2.97 16 38 H 0.25 6.79 8.27 -40.82 -0.34 6.45 16 39 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 42 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -31.14 318.55 -8.33 -39.47 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.90 Total: 5.55 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.58 Total: -12.51 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.18 Total: -45.68 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.91 Total: 18.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.14 -8.33 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.783 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds