Wall clock time and date at job start Mon Mar 30 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45676 * 2 1 4 4 C 1.53035 * 109.46170 * 119.97855 * 2 1 3 5 5 C 1.53120 * 109.27675 * 179.19718 * 4 2 1 6 6 C 1.53120 * 109.16066 * 302.33888 * 5 4 2 7 7 H 1.08997 * 109.50377 * 177.59903 * 6 5 4 8 8 C 1.50704 * 109.53731 * 297.69859 * 6 5 4 9 9 N 1.34774 * 119.99900 * 293.70634 * 8 6 5 10 10 O 1.21281 * 119.99649 * 113.70543 * 8 6 5 11 11 C 1.53036 * 109.27599 * 57.65819 * 6 5 4 12 12 N 1.46844 * 109.46133 * 240.03064 * 2 1 3 13 13 C 1.46898 * 111.00640 * 54.14326 * 12 2 1 14 14 C 1.52995 * 109.47415 * 191.63427 * 13 12 2 15 15 C 1.50696 * 115.55175 * 54.22906 * 14 13 12 16 16 H 1.07999 * 120.00315 * 215.43998 * 15 14 13 17 17 C 1.37875 * 119.99862 * 35.44616 * 15 14 13 18 18 N 1.31511 * 120.00276 * 13.45647 * 17 15 14 19 19 Si 1.86804 * 119.99689 * 193.73663 * 17 15 14 20 20 H 1.48495 * 109.47153 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46946 * 120.00135 * 19 17 15 22 22 H 1.48501 * 109.46700 * 239.99467 * 19 17 15 23 23 C 1.53005 * 117.49679 * 199.90286 * 14 13 12 24 24 C 1.53001 * 117.49710 * 268.55735 * 14 13 12 25 25 H 1.09005 * 109.47327 * 174.45523 * 1 2 3 26 26 H 1.08998 * 109.47552 * 294.45844 * 1 2 3 27 27 H 1.09007 * 109.47282 * 54.46043 * 1 2 3 28 28 H 1.08992 * 109.50605 * 59.25005 * 4 2 1 29 29 H 1.09009 * 109.50056 * 299.13396 * 4 2 1 30 30 H 1.08998 * 109.52004 * 182.43502 * 5 4 2 31 31 H 1.09003 * 109.52267 * 62.24859 * 5 4 2 32 32 H 0.97007 * 119.99988 * 0.02562 * 9 8 6 33 33 H 0.96995 * 119.99779 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46751 * 180.80628 * 11 6 5 35 35 H 1.09004 * 109.46599 * 60.83148 * 11 6 5 36 36 H 1.08998 * 109.46785 * 71.63232 * 13 12 2 37 37 H 1.09003 * 109.47002 * 311.63875 * 13 12 2 38 38 H 0.97002 * 120.00282 * 184.22950 * 18 17 15 39 39 H 1.09003 * 117.49594 * 215.00526 * 23 14 13 40 40 H 1.09000 * 117.49872 * 0.02562 * 23 14 13 41 41 H 1.08998 * 117.49926 * 359.97438 * 24 14 13 42 42 H 1.08996 * 117.49943 * 144.97675 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7361 1.2355 6 6 4.0548 -1.4188 -0.0468 7 1 5.1439 -1.3948 -0.0832 8 6 3.5823 -2.8498 -0.0650 9 7 4.0570 -3.7278 0.8406 10 8 2.7748 -3.2112 -0.8946 11 6 3.4865 -0.6777 -1.2591 12 7 2.0192 -0.6916 -1.1994 13 6 1.4373 -0.1105 -2.4166 14 6 1.7321 -1.0230 -3.6088 15 6 1.3065 -2.4597 -3.4485 16 1 1.9043 -3.2509 -3.8763 17 6 0.1539 -2.7641 -2.7558 18 7 -0.7087 -1.8148 -2.4651 19 14 -0.1788 -4.5235 -2.2236 20 1 0.9402 -5.3941 -2.6649 21 1 -0.2964 -4.5792 -0.7443 22 1 -1.4452 -4.9956 -2.8389 23 6 1.6382 -0.4101 -5.0076 24 6 3.0062 -0.7488 -4.4101 25 1 -0.3634 -1.0229 -0.0993 26 1 -0.3634 0.4255 0.9354 27 1 -0.3634 0.5974 -0.8363 28 1 1.6658 -1.7447 1.2575 29 1 1.6894 -0.1982 2.1399 30 1 3.9379 -1.2863 2.1019 31 1 3.9456 0.2870 1.2672 32 1 4.7026 -3.4385 1.5044 33 1 3.7532 -4.6488 0.8287 34 1 3.8174 -1.1698 -2.1736 35 1 3.8403 0.3533 -1.2532 36 1 1.8738 0.8723 -2.5945 37 1 0.3589 -0.0119 -2.2924 38 1 -1.4888 -2.0171 -1.9253 39 1 1.2686 -1.0462 -5.8119 40 1 1.3669 0.6432 -5.0784 41 1 3.6342 0.0819 -4.0883 42 1 3.5369 -1.6075 -4.8211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:06 Heat of formation + Delta-G solvation = -19.336203 kcal Electronic energy + Delta-G solvation = -22878.523165 eV Core-core repulsion = 19858.699667 eV Total energy + Delta-G solvation = -3019.823498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05844 -39.09235 -37.63090 -34.60261 -33.90697 -33.39368 -32.87161 -28.36550 -27.38985 -26.86437 -24.06635 -23.40951 -22.84761 -21.33057 -20.62579 -19.82573 -17.94539 -17.81075 -17.03866 -16.61553 -16.45977 -15.84186 -15.44977 -15.28997 -15.15281 -14.63509 -14.29816 -14.09845 -13.58482 -13.31454 -13.18995 -12.92689 -12.72927 -12.65564 -12.56268 -12.32304 -12.26649 -12.19125 -11.90495 -11.62361 -11.37706 -11.09248 -10.87734 -10.66715 -10.26823 -10.23895 -10.17374 -9.68193 -8.42283 -7.79636 -5.72577 1.40834 1.47959 1.58734 2.24426 2.66899 2.95751 3.21510 3.50067 3.86727 3.91907 4.04330 4.12034 4.22836 4.41993 4.51735 4.57456 4.63581 4.67363 4.81791 4.84556 4.91486 4.93595 4.96519 5.01032 5.04973 5.13216 5.19369 5.20474 5.24910 5.34662 5.53782 5.56164 5.63321 5.71996 5.85991 6.21778 6.26620 6.61753 6.83004 6.91651 6.95689 7.17021 7.85620 7.92848 9.23559 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.011064 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.529904 B = 2530.040826 C = 2914.973694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.080 3.920 3 H 0.028 0.972 4 C -0.107 4.107 5 C -0.098 4.098 6 C -0.099 4.099 7 H 0.118 0.882 8 C 0.494 3.506 9 N -0.857 5.857 10 O -0.519 6.519 11 C 0.074 3.926 12 N -0.491 5.491 13 C 0.108 3.892 14 C 0.053 3.947 15 C -0.445 4.445 16 H 0.017 0.983 17 C 0.081 3.919 18 N -0.885 5.885 19 Si 0.930 3.070 20 H -0.293 1.293 21 H -0.295 1.295 22 H -0.302 1.302 23 C -0.213 4.213 24 C -0.197 4.197 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.409 0.591 33 H 0.394 0.606 34 H 0.060 0.940 35 H 0.028 0.972 36 H -0.018 1.018 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.465 4.167 11.750 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.028 4.028 3 H 0.046 0.954 4 C -0.145 4.145 5 C -0.136 4.136 6 C -0.121 4.121 7 H 0.136 0.864 8 C 0.278 3.722 9 N -0.424 5.424 10 O -0.391 6.391 11 C -0.055 4.055 12 N -0.214 5.214 13 C -0.019 4.019 14 C 0.052 3.948 15 C -0.482 4.482 16 H 0.035 0.965 17 C -0.119 4.119 18 N -0.525 5.525 19 Si 0.762 3.238 20 H -0.219 1.219 21 H -0.222 1.222 22 H -0.230 1.230 23 C -0.252 4.252 24 C -0.234 4.234 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.224 0.776 34 H 0.078 0.922 35 H 0.046 0.954 36 H -0.001 1.001 37 H 0.117 0.883 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.572 3.649 11.202 15.180 hybrid contribution 0.048 -0.705 0.092 0.713 sum 9.621 2.944 11.294 15.125 Atomic orbital electron populations 1.21692 0.95165 1.01480 0.99888 1.21627 0.95235 0.94327 0.91649 0.95444 1.21595 0.96478 0.99860 0.96550 1.21541 0.94732 1.01708 0.95573 1.21426 1.01795 0.91593 0.97244 0.86378 1.20967 0.81412 0.88737 0.81093 1.43813 1.49235 1.13236 1.36106 1.91018 1.31749 1.79096 1.37257 1.21862 0.89037 0.96749 0.97860 1.61506 1.05142 1.54241 1.00543 1.21556 1.01521 0.89892 0.88975 1.18984 0.93689 0.94491 0.87605 1.19957 1.05510 0.89486 1.33213 0.96467 1.24680 0.95131 0.97088 0.94996 1.69964 1.11438 1.32489 1.38567 0.86009 0.75162 0.85246 0.77417 1.21914 1.22226 1.23008 1.22984 1.01319 0.99248 1.01630 1.22839 0.90801 1.01222 1.08536 0.94111 0.92018 0.94074 0.94306 0.89922 0.88963 0.89593 0.76031 0.77625 0.92186 0.95446 1.00054 0.88256 0.94146 0.91760 0.90803 0.90033 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 8.29 71.98 0.60 -4.24 16 2 C 0.08 2.88 2.44 44.94 0.11 2.99 16 3 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -3.12 5.12 30.65 0.16 -2.96 16 5 C -0.10 -2.14 5.48 30.67 0.17 -1.97 16 6 C -0.10 -2.72 3.01 -11.49 -0.03 -2.75 16 7 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 8 C 0.49 16.59 6.12 87.66 0.54 17.13 16 9 N -0.86 -19.86 8.85 -173.53 -1.54 -21.40 16 10 O -0.52 -24.46 14.36 -3.03 -0.04 -24.50 16 11 C 0.07 2.67 4.23 86.32 0.36 3.04 16 12 N -0.49 -20.72 2.78 -871.12 -2.42 -23.14 16 13 C 0.11 5.14 3.84 86.30 0.33 5.47 16 14 C 0.05 2.71 1.43 -52.93 -0.08 2.64 16 15 C -0.44 -25.83 7.81 25.60 0.20 -25.63 16 16 H 0.02 1.07 7.85 -2.91 -0.02 1.05 16 17 C 0.08 4.70 5.13 84.65 0.43 5.13 16 18 N -0.88 -50.42 9.68 21.45 0.21 -50.21 16 19 Si 0.93 50.17 28.87 68.60 1.98 52.15 16 20 H -0.29 -16.30 7.11 99.48 0.71 -15.60 16 21 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 22 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 23 C -0.21 -10.15 9.96 30.62 0.30 -9.84 16 24 C -0.20 -8.87 8.22 30.62 0.25 -8.62 16 25 H 0.04 1.87 7.20 -2.38 -0.02 1.85 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.71 6.41 -2.38 -0.02 1.69 16 28 H 0.04 1.38 7.36 -2.39 -0.02 1.36 16 29 H 0.08 1.96 8.14 -2.38 -0.02 1.95 16 30 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.41 5.84 8.68 -92.70 -0.80 5.04 16 33 H 0.39 9.27 8.93 -92.71 -0.83 8.45 16 34 H 0.06 2.53 5.84 -2.39 -0.01 2.51 16 35 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 36 H -0.02 -0.83 8.05 -2.39 -0.02 -0.85 16 37 H 0.10 5.20 3.63 -2.39 -0.01 5.19 16 38 H 0.25 13.89 8.27 -92.71 -0.77 13.12 16 39 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.08 3.29 8.11 -2.39 -0.02 3.27 16 42 H 0.06 2.94 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -70.81 318.55 0.93 -69.88 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.61 Total: 16.83 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.34 Total: -19.62 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.75 Total: -94.75 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.50 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.98 Total: 52.15 kcal Total: -70.81 0.93 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.547 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds