Wall clock time and date at job start Mon Mar 30 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45316 * 2 1 4 4 C 1.53039 * 109.46565 * 240.02042 * 2 1 3 5 5 C 1.53115 * 109.31183 * 180.82810 * 4 2 1 6 6 H 1.08998 * 109.52302 * 177.54604 * 5 4 2 7 7 C 1.50703 * 109.51965 * 297.66735 * 5 4 2 8 8 O 1.21278 * 120.00210 * 354.79398 * 7 5 4 9 9 N 1.34782 * 119.99766 * 174.80552 * 7 5 4 10 10 C 1.46498 * 119.99972 * 184.92297 * 9 7 5 11 11 C 1.52997 * 109.47291 * 185.00443 * 10 9 7 12 12 C 1.50696 * 115.54985 * 275.58790 * 11 10 9 13 13 H 1.07998 * 119.99873 * 114.79293 * 12 11 10 14 14 C 1.37875 * 119.99967 * 294.79442 * 12 11 10 15 15 N 1.31511 * 120.00066 * 352.14590 * 14 12 11 16 16 Si 1.86805 * 119.99835 * 172.15098 * 14 12 11 17 17 H 1.48499 * 109.47216 * 60.00024 * 16 14 12 18 18 H 1.48501 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47206 * 299.99744 * 16 14 12 20 20 C 1.53004 * 117.49960 * 129.87906 * 11 10 9 21 21 C 1.52998 * 60.00099 * 252.51221 * 20 11 10 22 22 C 1.53113 * 109.16250 * 57.63378 * 5 4 2 23 23 C 1.53035 * 109.28033 * 302.34527 * 22 5 4 24 24 N 1.46848 * 109.52206 * 59.17983 * 23 22 5 25 25 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47437 * 299.98024 * 1 2 3 27 27 H 1.09001 * 109.47236 * 59.97570 * 1 2 3 28 28 H 1.09002 * 109.49822 * 60.86302 * 4 2 1 29 29 H 1.09001 * 109.50012 * 300.78648 * 4 2 1 30 30 H 0.96997 * 119.99722 * 4.92232 * 9 7 5 31 31 H 1.09008 * 109.46915 * 305.00677 * 10 9 7 32 32 H 1.08999 * 109.47397 * 65.00127 * 10 9 7 33 33 H 0.96996 * 119.99844 * 185.00377 * 15 14 12 34 34 H 1.08999 * 117.49749 * 359.97438 * 20 11 10 35 35 H 1.08998 * 117.49695 * 145.02583 * 20 11 10 36 36 H 1.09005 * 117.50178 * 252.51325 * 21 20 11 37 37 H 1.08998 * 117.52039 * 107.48201 * 21 20 11 38 38 H 1.09002 * 109.50280 * 62.28682 * 22 5 4 39 39 H 1.09006 * 109.50534 * 182.36701 * 22 5 4 40 40 H 1.08998 * 109.46700 * 179.19692 * 23 22 5 41 41 H 1.08997 * 109.46623 * 299.16476 * 23 22 5 42 42 H 1.00898 * 111.00114 * 174.16176 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7371 -1.2359 6 1 3.9374 -1.2877 -2.1023 7 6 4.0898 0.6771 -1.2817 8 8 3.3175 1.6023 -1.4168 9 7 5.4122 0.9135 -1.1729 10 6 5.9073 2.2909 -1.1089 11 6 7.4372 2.2837 -1.1142 12 6 8.0909 2.0841 0.2288 13 1 8.6742 1.1952 0.4187 14 6 7.9443 3.0362 1.2152 15 7 7.3677 4.1855 0.9393 16 14 8.5650 2.6937 2.9435 17 1 10.0278 2.4412 2.9032 18 1 8.2896 3.8678 3.8101 19 1 7.8715 1.5003 3.4911 20 6 8.1445 3.1992 -2.1156 21 6 8.1366 1.6852 -2.3363 22 6 4.0548 -1.4197 0.0464 23 6 3.4873 -0.6779 1.2587 24 7 2.0200 -0.6911 1.1995 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8901 27 1 -0.3634 0.5142 -0.8898 28 1 1.6895 -0.1983 -2.1399 29 1 1.6654 -1.7446 -1.2577 30 1 6.0362 0.1717 -1.1368 31 1 5.5434 2.8482 -1.9722 32 1 5.5493 2.7635 -0.1942 33 1 7.3293 4.8828 1.6125 34 1 7.5198 3.8062 -2.7709 35 1 9.0828 3.6573 -1.8030 36 1 9.0698 1.1473 -2.1689 37 1 7.5068 1.2962 -3.1363 38 1 3.7118 -2.4543 0.0596 39 1 5.1440 -1.3968 0.0823 40 1 3.8183 -1.1699 2.1733 41 1 3.8417 0.3529 1.2525 42 1 1.6208 -0.2914 2.0355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404158338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:01 Heat of formation + Delta-G solvation = -29.534197 kcal Electronic energy + Delta-G solvation = -21377.291175 eV Core-core repulsion = 18357.025458 eV Total energy + Delta-G solvation = -3020.265716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09748 -37.58340 -36.50515 -33.57659 -32.41503 -32.07257 -31.68642 -26.91562 -26.59218 -25.34422 -23.43567 -21.98429 -21.29566 -20.57355 -19.42006 -18.67163 -16.57669 -16.22591 -15.86315 -15.10399 -15.02504 -14.79799 -14.65557 -13.94249 -13.58560 -13.46692 -13.28255 -12.74218 -12.60993 -12.18760 -11.91637 -11.71744 -11.67684 -11.54684 -11.52105 -11.01517 -10.97102 -10.77986 -10.57579 -10.34306 -10.33048 -10.21113 -9.65717 -9.18735 -9.07931 -8.63430 -8.26437 -8.21587 -8.08743 -6.12165 -4.19008 3.20142 3.23709 3.30252 3.31343 3.87545 4.31470 4.32911 4.83232 4.88889 4.99504 5.11035 5.25108 5.32772 5.42949 5.52982 5.62312 5.68620 5.77962 5.86396 5.94161 5.99236 6.01982 6.09437 6.15019 6.22632 6.27861 6.28676 6.44049 6.48007 6.58718 6.63084 6.89870 7.02517 7.20787 7.26430 7.38984 7.46625 7.50101 7.80035 8.28299 8.30799 8.79140 8.89640 9.45916 10.95504 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.006142 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.335216 B = 4557.977742 C = 5229.213173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.065 0.935 4 C -0.085 4.085 5 C -0.113 4.113 6 H 0.093 0.907 7 C 0.507 3.493 8 O -0.554 6.554 9 N -0.709 5.709 10 C 0.164 3.836 11 C 0.035 3.965 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.165 4.165 21 C -0.208 4.208 22 C -0.106 4.106 23 C 0.053 3.947 24 N -0.687 5.687 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.397 0.603 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 -10.207 -2.044 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 H 0.083 0.917 4 C -0.124 4.124 5 C -0.135 4.135 6 H 0.111 0.889 7 C 0.293 3.707 8 O -0.433 6.433 9 N -0.357 5.357 10 C 0.041 3.959 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.204 4.204 21 C -0.246 4.246 22 C -0.144 4.144 23 C -0.076 4.076 24 N -0.319 5.319 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.674 -9.963 -2.306 13.410 hybrid contribution 0.994 0.601 1.190 1.662 sum -7.681 -9.362 -1.116 12.161 Atomic orbital electron populations 1.21770 0.94891 1.01748 1.01460 1.21666 0.94654 0.97506 0.90081 0.91670 1.21353 0.92582 1.00596 0.97826 1.21431 0.97723 0.94354 0.99970 0.88887 1.20512 0.82761 0.90833 0.76619 1.90614 1.56315 1.46026 1.50380 1.46153 1.06502 1.10535 1.72525 1.20985 0.94123 0.79952 1.00807 1.19072 0.89195 0.98679 0.89675 1.20379 1.32400 1.06080 0.94814 0.92152 1.24982 0.94562 0.95018 0.98573 1.69955 1.42498 1.04009 1.34600 0.86694 0.79262 0.77870 0.84422 1.20216 1.21247 1.20102 1.22708 1.02815 0.90803 1.04036 1.22883 1.02544 0.97130 1.01994 1.21561 1.00376 0.99704 0.92740 1.21903 0.87807 0.99437 0.98438 1.60426 1.07119 1.59462 1.04906 0.92343 0.93138 0.92237 0.91132 0.91183 0.76960 0.94264 0.90425 0.92702 0.91703 0.89998 0.90379 0.91490 0.90505 0.90798 0.90731 0.94459 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.44 37.16 0.35 -1.30 16 2 C 0.07 1.00 2.77 -67.72 -0.19 0.81 16 3 H 0.07 1.17 5.92 -51.93 -0.31 0.86 16 4 C -0.09 -1.15 4.51 -26.65 -0.12 -1.27 16 5 C -0.11 -1.58 3.04 -91.65 -0.28 -1.86 16 6 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 7 C 0.51 9.25 5.73 -10.98 -0.06 9.19 16 8 O -0.55 -12.01 13.99 5.56 0.08 -11.93 16 9 N -0.71 -13.42 5.27 -60.29 -0.32 -13.73 16 10 C 0.16 3.76 5.53 -4.04 -0.02 3.74 16 11 C 0.03 0.81 1.32 -155.66 -0.21 0.60 16 12 C -0.50 -12.78 8.82 -34.44 -0.30 -13.08 16 13 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 14 C 0.07 1.92 5.22 -17.82 -0.09 1.82 16 15 N -0.87 -24.20 12.60 55.43 0.70 -23.51 16 16 Si 0.89 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.17 -3.72 9.88 -26.73 -0.26 -3.99 16 21 C -0.21 -4.22 9.78 -26.73 -0.26 -4.48 16 22 C -0.11 -1.36 5.49 -26.65 -0.15 -1.51 16 23 C 0.05 0.76 6.35 -3.83 -0.02 0.74 16 24 N -0.69 -9.17 6.50 -106.76 -0.69 -9.86 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.40 6.77 7.66 -40.82 -0.31 6.45 16 31 H 0.04 0.93 7.87 -51.92 -0.41 0.52 16 32 H 0.08 2.06 7.26 -51.93 -0.38 1.68 16 33 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 34 H 0.06 1.41 8.06 -51.93 -0.42 0.99 16 35 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.65 7.31 -51.93 -0.38 0.27 16 42 H 0.34 4.14 8.79 -39.29 -0.35 3.79 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -28.57 332.85 -8.98 -37.55 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.12 Total: 11.66 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.62 Total: -10.59 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.31 Total: -47.10 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.57 -8.98 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404158338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.019 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds