Wall clock time and date at job start Mon Mar 30 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45316 * 2 1 4 4 C 1.53039 * 109.46565 * 240.02042 * 2 1 3 5 5 C 1.53115 * 109.31183 * 180.82810 * 4 2 1 6 6 H 1.08998 * 109.52302 * 177.54604 * 5 4 2 7 7 C 1.50703 * 109.51965 * 297.66735 * 5 4 2 8 8 O 1.21278 * 120.00210 * 354.79398 * 7 5 4 9 9 N 1.34782 * 119.99766 * 174.80552 * 7 5 4 10 10 C 1.46498 * 119.99972 * 184.92297 * 9 7 5 11 11 C 1.52997 * 109.47291 * 185.00443 * 10 9 7 12 12 C 1.50696 * 115.54985 * 275.58790 * 11 10 9 13 13 H 1.07998 * 119.99873 * 114.79293 * 12 11 10 14 14 C 1.37875 * 119.99967 * 294.79442 * 12 11 10 15 15 N 1.31511 * 120.00066 * 352.14590 * 14 12 11 16 16 Si 1.86805 * 119.99835 * 172.15098 * 14 12 11 17 17 H 1.48499 * 109.47216 * 60.00024 * 16 14 12 18 18 H 1.48501 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47206 * 299.99744 * 16 14 12 20 20 C 1.53004 * 117.49960 * 129.87906 * 11 10 9 21 21 C 1.52998 * 60.00099 * 252.51221 * 20 11 10 22 22 C 1.53113 * 109.16250 * 57.63378 * 5 4 2 23 23 C 1.53035 * 109.28033 * 302.34527 * 22 5 4 24 24 N 1.46848 * 109.52206 * 59.17983 * 23 22 5 25 25 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47437 * 299.98024 * 1 2 3 27 27 H 1.09001 * 109.47236 * 59.97570 * 1 2 3 28 28 H 1.09002 * 109.49822 * 60.86302 * 4 2 1 29 29 H 1.09001 * 109.50012 * 300.78648 * 4 2 1 30 30 H 0.96997 * 119.99722 * 4.92232 * 9 7 5 31 31 H 1.09008 * 109.46915 * 305.00677 * 10 9 7 32 32 H 1.08999 * 109.47397 * 65.00127 * 10 9 7 33 33 H 0.96996 * 119.99844 * 185.00377 * 15 14 12 34 34 H 1.08999 * 117.49749 * 359.97438 * 20 11 10 35 35 H 1.08998 * 117.49695 * 145.02583 * 20 11 10 36 36 H 1.09005 * 117.50178 * 252.51325 * 21 20 11 37 37 H 1.08998 * 117.52039 * 107.48201 * 21 20 11 38 38 H 1.09002 * 109.50280 * 62.28682 * 22 5 4 39 39 H 1.09006 * 109.50534 * 182.36701 * 22 5 4 40 40 H 1.08998 * 109.46700 * 179.19692 * 23 22 5 41 41 H 1.08997 * 109.46623 * 299.16476 * 23 22 5 42 42 H 1.00898 * 111.00114 * 174.16176 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5710 -0.7371 -1.2359 6 1 3.9374 -1.2877 -2.1023 7 6 4.0898 0.6771 -1.2817 8 8 3.3175 1.6023 -1.4168 9 7 5.4122 0.9135 -1.1729 10 6 5.9073 2.2909 -1.1089 11 6 7.4372 2.2837 -1.1142 12 6 8.0909 2.0841 0.2288 13 1 8.6742 1.1952 0.4187 14 6 7.9443 3.0362 1.2152 15 7 7.3677 4.1855 0.9393 16 14 8.5650 2.6937 2.9435 17 1 10.0278 2.4412 2.9032 18 1 8.2896 3.8678 3.8101 19 1 7.8715 1.5003 3.4911 20 6 8.1445 3.1992 -2.1156 21 6 8.1366 1.6852 -2.3363 22 6 4.0548 -1.4197 0.0464 23 6 3.4873 -0.6779 1.2587 24 7 2.0200 -0.6911 1.1995 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8901 27 1 -0.3634 0.5142 -0.8898 28 1 1.6895 -0.1983 -2.1399 29 1 1.6654 -1.7446 -1.2577 30 1 6.0362 0.1717 -1.1368 31 1 5.5434 2.8482 -1.9722 32 1 5.5493 2.7635 -0.1942 33 1 7.3293 4.8828 1.6125 34 1 7.5198 3.8062 -2.7709 35 1 9.0828 3.6573 -1.8030 36 1 9.0698 1.1473 -2.1689 37 1 7.5068 1.2962 -3.1363 38 1 3.7118 -2.4543 0.0596 39 1 5.1440 -1.3968 0.0823 40 1 3.8183 -1.1699 2.1733 41 1 3.8417 0.3529 1.2525 42 1 1.6208 -0.2914 2.0355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404158338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:00 Heat of formation + Delta-G solvation = -48.748392 kcal Electronic energy + Delta-G solvation = -21378.124365 eV Core-core repulsion = 18357.025458 eV Total energy + Delta-G solvation = -3021.098907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44945 -39.06477 -38.10946 -35.10565 -34.09699 -33.60840 -32.79144 -28.34489 -27.92451 -27.24309 -24.70566 -23.22863 -22.92823 -21.85505 -21.22372 -20.14887 -18.26026 -17.45566 -17.30917 -16.74264 -16.56781 -16.35400 -15.96013 -15.59858 -15.01394 -14.77779 -14.49680 -14.29430 -14.06124 -13.57273 -13.35124 -13.16793 -12.97808 -12.93673 -12.79785 -12.70729 -12.65030 -12.40589 -12.08281 -11.87565 -11.49113 -11.39187 -11.27093 -10.97020 -10.73525 -10.53992 -10.05211 -9.83961 -9.37279 -8.13543 -6.24853 1.40563 1.42347 1.48742 1.75103 2.38303 2.41421 3.11874 3.23657 3.50434 3.72029 3.81670 3.85921 4.17436 4.19911 4.29429 4.44600 4.51674 4.52931 4.61791 4.62490 4.74354 4.76205 4.81624 4.93362 4.94124 4.95325 5.03837 5.05955 5.16927 5.19206 5.22086 5.26363 5.40918 5.54309 5.55751 5.69039 5.79429 6.08178 6.34174 6.43026 6.75484 6.83959 7.41763 7.43151 8.93857 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.006142 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.335216 B = 4557.977742 C = 5229.213173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.019 0.981 4 C -0.084 4.084 5 C -0.106 4.106 6 H 0.126 0.874 7 C 0.503 3.497 8 O -0.593 6.593 9 N -0.703 5.703 10 C 0.185 3.815 11 C 0.009 3.991 12 C -0.503 4.503 13 H 0.064 0.936 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.269 1.269 20 C -0.178 4.178 21 C -0.170 4.170 22 C -0.101 4.101 23 C 0.051 3.949 24 N -0.674 5.674 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.408 0.592 31 H 0.024 0.976 32 H 0.031 0.969 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.089 0.911 41 H -0.007 1.007 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -13.362 -2.299 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.037 0.963 4 C -0.122 4.122 5 C -0.127 4.127 6 H 0.144 0.856 7 C 0.291 3.709 8 O -0.475 6.475 9 N -0.353 5.353 10 C 0.061 3.939 11 C 0.008 3.992 12 C -0.541 4.541 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.194 1.194 20 C -0.216 4.216 21 C -0.207 4.207 22 C -0.139 4.139 23 C -0.079 4.079 24 N -0.306 5.306 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.244 0.756 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.011 0.989 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.693 -13.161 -2.564 15.980 hybrid contribution 0.975 1.610 1.258 2.264 sum -7.717 -11.551 -1.306 13.953 Atomic orbital electron populations 1.21716 0.92935 1.02864 1.01706 1.21644 0.96306 0.95236 0.91049 0.96290 1.21388 0.92146 1.01816 0.96857 1.21513 0.98034 0.91146 1.01998 0.85619 1.21418 0.81907 0.92587 0.74963 1.90604 1.57118 1.47942 1.51812 1.46000 1.07290 1.09180 1.72800 1.20423 0.94023 0.81771 0.97726 1.19076 0.89184 1.00858 0.90064 1.20697 1.31782 1.05751 0.95839 0.91784 1.25704 0.95043 0.94896 1.02020 1.70091 1.44242 1.04906 1.35455 0.85771 0.79101 0.77508 0.80265 1.19285 1.21835 1.19415 1.22665 1.02128 0.92569 1.04272 1.22892 1.02490 0.95101 1.00233 1.21594 1.00632 1.00640 0.90998 1.21955 0.88401 0.97296 1.00205 1.60514 1.06485 1.58658 1.04920 0.90627 0.92813 0.92229 0.91951 0.88370 0.75572 0.95785 0.95025 0.93203 0.91479 0.91471 0.89168 0.89146 0.87588 0.90358 0.89261 0.98871 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.44 71.98 0.68 -2.29 16 2 C 0.07 1.86 2.77 44.94 0.12 1.99 16 3 H 0.02 0.71 5.92 -2.39 -0.01 0.70 16 4 C -0.08 -2.08 4.51 30.65 0.14 -1.94 16 5 C -0.11 -2.69 3.04 -11.46 -0.03 -2.73 16 6 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 7 C 0.50 18.32 5.73 87.66 0.50 18.82 16 8 O -0.59 -26.65 13.99 -3.02 -0.04 -26.70 16 9 N -0.70 -26.52 5.27 -463.05 -2.44 -28.96 16 10 C 0.18 8.73 5.53 86.38 0.48 9.21 16 11 C 0.01 0.42 1.32 -52.93 -0.07 0.35 16 12 C -0.50 -25.75 8.82 25.60 0.23 -25.52 16 13 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 14 C 0.02 1.28 5.22 84.65 0.44 1.72 16 15 N -0.91 -52.08 12.60 21.45 0.27 -51.81 16 16 Si 0.95 42.22 29.55 68.60 2.03 44.25 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 C -0.18 -8.03 9.88 30.60 0.30 -7.73 16 21 C -0.17 -6.56 9.78 30.59 0.30 -6.26 16 22 C -0.10 -2.30 5.49 30.64 0.17 -2.13 16 23 C 0.05 1.40 6.35 86.32 0.55 1.95 16 24 N -0.67 -17.04 6.50 -491.68 -3.20 -20.23 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.65 7.97 -2.39 -0.02 1.63 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.41 13.31 7.66 -92.71 -0.71 12.60 16 31 H 0.02 1.18 7.87 -2.38 -0.02 1.16 16 32 H 0.03 1.77 7.26 -2.39 -0.02 1.76 16 33 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 34 H 0.07 2.94 8.06 -2.39 -0.02 2.93 16 35 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 1.73 7.35 -2.38 -0.02 1.72 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H -0.01 -0.26 7.31 -2.39 -0.02 -0.27 16 42 H 0.34 8.09 8.79 -89.70 -0.79 7.31 16 Total: -1.00 -64.17 332.85 -0.07 -64.24 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.49 Total: 33.77 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.80 Total: -14.56 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.37 Total: -101.01 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -64.17 -0.07 -64.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404158338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.495 kcal (2) G-P(sol) polarization free energy of solvation -64.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds