Wall clock time and date at job start Mon Mar 30 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 H 1.08997 * 109.47369 * 55.00342 * 4 3 2 6 6 C 1.53001 * 109.47210 * 295.00063 * 4 3 2 7 7 C 1.53000 * 109.47210 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47119 * 60.00191 * 7 6 4 9 9 C 1.53005 * 109.47218 * 299.99815 * 8 7 6 10 10 C 1.53000 * 109.46925 * 60.00065 * 9 8 7 11 11 H 1.08998 * 109.47012 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47038 * 59.99935 * 10 9 8 13 13 C 1.46903 * 110.99492 * 85.00193 * 12 10 9 14 14 C 1.50701 * 109.46971 * 179.97438 * 13 12 10 15 15 O 1.21299 * 119.99872 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00158 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99953 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00323 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00241 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99524 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00285 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47085 * 60.00163 * 21 19 17 23 23 H 1.48494 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47294 * 300.00300 * 21 19 17 25 25 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 28 28 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 29 29 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 30 30 H 1.09007 * 109.47133 * 300.00341 * 6 4 3 31 31 H 1.08998 * 109.47303 * 60.00214 * 6 4 3 32 32 H 1.08995 * 109.47075 * 299.99823 * 7 6 4 33 33 H 1.09009 * 109.47067 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47090 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47515 * 59.99841 * 8 7 6 36 36 H 1.08995 * 109.46948 * 300.00351 * 9 8 7 37 37 H 1.08998 * 109.47127 * 180.02562 * 9 8 7 38 38 H 1.00900 * 110.99634 * 208.95102 * 12 10 9 39 39 H 1.09002 * 109.47337 * 299.99351 * 13 12 10 40 40 H 1.08993 * 109.47473 * 60.00152 * 13 12 10 41 41 H 0.96997 * 119.99909 * 0.02562 * 16 14 13 42 42 H 0.97004 * 119.99813 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 1 3.6874 0.4546 1.1315 6 6 2.2553 1.3157 2.4911 7 6 3.2318 1.3402 3.6687 8 6 4.0844 2.6085 3.5980 9 6 4.8690 2.6231 2.2845 10 6 3.8926 2.5986 1.1069 11 1 4.4515 2.6094 0.1712 12 7 3.0204 3.7791 1.1694 13 6 3.6590 4.9396 0.5342 14 6 2.7365 6.1284 0.6170 15 8 1.6537 6.0197 1.1529 16 7 3.1149 7.3126 0.0966 17 6 2.2755 8.3939 0.1714 18 1 1.3111 8.2969 0.6478 19 6 2.6658 9.6150 -0.3647 20 7 3.8394 9.7331 -0.9439 21 14 1.5223 11.0885 -0.2620 22 1 1.2386 11.3965 1.1627 23 1 2.1680 12.2618 -0.9035 24 1 0.2511 10.7784 -0.9641 25 1 -0.5401 0.9353 0.0045 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0046 28 1 2.6173 1.4049 -0.9334 29 1 1.3589 2.1314 0.0945 30 1 1.6078 2.1914 2.5372 31 1 1.6482 0.4119 2.5418 32 1 3.8789 0.4643 3.6224 33 1 2.6728 1.3303 4.6045 34 1 4.7798 2.6262 4.4372 35 1 3.4373 3.4845 3.6443 36 1 5.5161 1.7472 2.2382 37 1 5.4768 3.5265 2.2343 38 1 2.1220 3.5873 0.7521 39 1 4.5926 5.1673 1.0486 40 1 3.8661 4.7131 -0.5116 41 1 3.9809 7.3996 -0.3316 42 1 4.1118 10.5854 -1.3185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595604473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:54 Heat of formation + Delta-G solvation = -41.235466 kcal Electronic energy + Delta-G solvation = -20645.694727 eV Core-core repulsion = 17624.921606 eV Total energy + Delta-G solvation = -3020.773122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.56568 -37.95053 -35.03474 -34.22369 -33.55948 -31.20709 -30.90253 -29.62582 -26.54352 -25.62344 -23.92464 -22.04113 -21.47015 -19.79140 -19.19443 -18.78078 -17.85686 -16.16585 -15.67429 -15.41318 -15.02524 -14.55647 -14.41439 -13.95664 -13.92447 -13.75164 -13.29163 -13.07867 -12.66884 -12.39628 -12.03874 -11.95713 -11.73616 -11.50773 -11.45606 -11.25769 -11.03714 -10.99909 -10.72677 -10.42502 -10.31486 -10.18476 -10.14808 -9.78993 -9.46924 -9.30540 -8.37256 -7.95905 -7.89558 -6.38875 -3.79527 2.22861 3.21995 3.27334 3.31901 3.95435 4.14863 4.41800 4.63337 4.72578 4.87719 5.06147 5.14421 5.23032 5.28823 5.32462 5.44877 5.47115 5.57132 5.58787 5.64739 5.73537 5.84932 5.87136 5.89454 5.99599 6.02862 6.06446 6.14441 6.29085 6.36462 6.38247 6.44906 6.50330 6.58305 6.72195 6.76759 7.37169 7.57575 7.79583 8.09682 8.64938 9.20969 9.58112 10.09932 10.78940 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.004157 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.603773 B = 6734.504510 C = 7267.050604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.099 4.099 4 C -0.080 4.080 5 H 0.072 0.928 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.113 4.113 9 C -0.105 4.105 10 C 0.090 3.910 11 H 0.040 0.960 12 N -0.659 5.659 13 C 0.050 3.950 14 C 0.442 3.558 15 O -0.583 6.583 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.348 0.652 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -17.736 2.643 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.098 4.098 5 H 0.090 0.910 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.143 4.143 10 C -0.020 4.020 11 H 0.057 0.943 12 N -0.294 5.294 13 C -0.083 4.083 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.202 5.202 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.170 0.830 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.344 -17.449 3.539 17.855 hybrid contribution 0.055 0.613 -1.272 1.413 sum 1.399 -16.836 2.267 17.046 Atomic orbital electron populations 1.23864 0.96040 1.01807 1.01743 1.22863 0.95947 0.98169 0.99369 1.20932 0.98564 0.95809 0.98378 1.21241 0.96357 0.97310 0.94931 0.90991 1.21510 0.97804 1.02062 0.93208 1.21466 0.97818 0.97811 0.97980 1.21413 0.98632 0.99043 0.95972 1.21498 0.96865 1.00901 0.95039 1.21548 0.93772 0.89715 0.96976 0.94254 1.60162 1.05718 1.02719 1.60793 1.21720 0.98117 0.91487 0.96960 1.19852 0.88614 0.84347 0.84446 1.90517 1.23803 1.84368 1.48057 1.41862 1.18752 1.08298 1.51253 1.19650 1.00420 0.87417 1.35373 0.88027 1.25248 0.96826 0.99090 0.96760 1.69606 1.19674 1.26695 1.38466 0.85926 0.79710 0.79985 0.78645 1.19897 1.21002 1.19955 0.88386 0.88844 0.87752 0.91196 0.90816 0.90569 0.92702 0.93068 0.92566 0.93305 0.89936 0.92615 0.92128 0.83001 0.89759 0.94165 0.77505 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 14.32 29.02 0.42 -1.53 16 2 C -0.15 -1.44 8.50 -36.02 -0.31 -1.75 16 3 C -0.10 -1.09 4.78 -27.88 -0.13 -1.22 16 4 C -0.08 -0.88 1.95 -90.62 -0.18 -1.05 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -1.26 4.86 -26.73 -0.13 -1.39 16 7 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 8 C -0.11 -1.42 5.77 -26.73 -0.15 -1.57 16 9 C -0.10 -1.27 5.53 -26.73 -0.15 -1.42 16 10 C 0.09 1.14 2.30 -67.71 -0.16 0.98 16 11 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 12 N -0.66 -10.56 4.45 -107.99 -0.48 -11.04 16 13 C 0.05 0.89 5.96 -4.97 -0.03 0.86 16 14 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 15 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 16 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 17 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 21 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 26 H 0.09 0.79 8.06 -52.49 -0.42 0.36 16 27 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.92 6.08 -51.93 -0.32 0.60 16 30 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 31 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.27 7.60 -51.93 -0.39 0.88 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.78 7.46 -51.93 -0.39 0.39 16 38 H 0.35 5.85 5.79 -39.29 -0.23 5.62 16 39 H 0.08 1.42 7.44 -51.93 -0.39 1.03 16 40 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -29.90 333.57 -7.96 -37.86 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.93 Total: 13.49 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.30 Total: -7.14 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.19 Total: -49.65 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.90 -7.96 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595604473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.378 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds