Wall clock time and date at job start Mon Mar 30 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 H 1.08997 * 109.47369 * 55.00342 * 4 3 2 6 6 C 1.53001 * 109.47210 * 295.00063 * 4 3 2 7 7 C 1.53000 * 109.47210 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47119 * 60.00191 * 7 6 4 9 9 C 1.53005 * 109.47218 * 299.99815 * 8 7 6 10 10 C 1.53000 * 109.46925 * 60.00065 * 9 8 7 11 11 H 1.08998 * 109.47012 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47038 * 59.99935 * 10 9 8 13 13 C 1.46903 * 110.99492 * 85.00193 * 12 10 9 14 14 C 1.50701 * 109.46971 * 179.97438 * 13 12 10 15 15 O 1.21299 * 119.99872 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00158 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99953 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00323 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00241 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99524 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00285 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47085 * 60.00163 * 21 19 17 23 23 H 1.48494 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47294 * 300.00300 * 21 19 17 25 25 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 28 28 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 29 29 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 30 30 H 1.09007 * 109.47133 * 300.00341 * 6 4 3 31 31 H 1.08998 * 109.47303 * 60.00214 * 6 4 3 32 32 H 1.08995 * 109.47075 * 299.99823 * 7 6 4 33 33 H 1.09009 * 109.47067 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47090 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47515 * 59.99841 * 8 7 6 36 36 H 1.08995 * 109.46948 * 300.00351 * 9 8 7 37 37 H 1.08998 * 109.47127 * 180.02562 * 9 8 7 38 38 H 1.00900 * 110.99634 * 208.95102 * 12 10 9 39 39 H 1.09002 * 109.47337 * 299.99351 * 13 12 10 40 40 H 1.08993 * 109.47473 * 60.00152 * 13 12 10 41 41 H 0.96997 * 119.99909 * 0.02562 * 16 14 13 42 42 H 0.97004 * 119.99813 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 1 3.6874 0.4546 1.1315 6 6 2.2553 1.3157 2.4911 7 6 3.2318 1.3402 3.6687 8 6 4.0844 2.6085 3.5980 9 6 4.8690 2.6231 2.2845 10 6 3.8926 2.5986 1.1069 11 1 4.4515 2.6094 0.1712 12 7 3.0204 3.7791 1.1694 13 6 3.6590 4.9396 0.5342 14 6 2.7365 6.1284 0.6170 15 8 1.6537 6.0197 1.1529 16 7 3.1149 7.3126 0.0966 17 6 2.2755 8.3939 0.1714 18 1 1.3111 8.2969 0.6478 19 6 2.6658 9.6150 -0.3647 20 7 3.8394 9.7331 -0.9439 21 14 1.5223 11.0885 -0.2620 22 1 1.2386 11.3965 1.1627 23 1 2.1680 12.2618 -0.9035 24 1 0.2511 10.7784 -0.9641 25 1 -0.5401 0.9353 0.0045 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0046 28 1 2.6173 1.4049 -0.9334 29 1 1.3589 2.1314 0.0945 30 1 1.6078 2.1914 2.5372 31 1 1.6482 0.4119 2.5418 32 1 3.8789 0.4643 3.6224 33 1 2.6728 1.3303 4.6045 34 1 4.7798 2.6262 4.4372 35 1 3.4373 3.4845 3.6443 36 1 5.5161 1.7472 2.2382 37 1 5.4768 3.5265 2.2343 38 1 2.1220 3.5873 0.7521 39 1 4.5926 5.1673 1.0486 40 1 3.8661 4.7131 -0.5116 41 1 3.9809 7.3996 -0.3316 42 1 4.1118 10.5854 -1.3185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595604473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:54 Heat of formation + Delta-G solvation = -59.680978 kcal Electronic energy + Delta-G solvation = -20646.494585 eV Core-core repulsion = 17624.921606 eV Total energy + Delta-G solvation = -3021.572979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70718 -39.74211 -36.12417 -35.83465 -35.03213 -33.25629 -31.81850 -30.75197 -28.04920 -26.78662 -25.63571 -23.02928 -22.40951 -21.07470 -20.57834 -19.92207 -19.79327 -17.77755 -17.00030 -16.70368 -16.32757 -16.00072 -15.72393 -15.48295 -15.33006 -14.92275 -14.47140 -14.14186 -14.06586 -13.65964 -13.50944 -13.22088 -13.02739 -12.92325 -12.72429 -12.63105 -12.43178 -12.21808 -12.12346 -11.86266 -11.67111 -11.50549 -11.28338 -11.09519 -10.73742 -10.31382 -10.10166 -10.01726 -9.18716 -8.46719 -5.95561 1.39374 1.40957 1.45753 1.52092 2.05700 2.29103 2.97768 3.20595 3.55478 3.73642 3.81858 3.98520 4.19380 4.30320 4.32641 4.42375 4.47766 4.51679 4.57760 4.61260 4.65629 4.70496 4.74597 4.82327 4.98295 5.05659 5.11044 5.16001 5.19307 5.39068 5.40659 5.43641 5.49555 5.53712 5.74469 5.79115 5.94103 5.96432 6.20404 6.50643 6.60483 7.12451 7.56326 8.11906 8.70608 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.004157 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.603773 B = 6734.504510 C = 7267.050604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.098 4.098 4 C -0.071 4.071 5 H 0.096 0.904 6 C -0.105 4.105 7 C -0.110 4.110 8 C -0.112 4.112 9 C -0.104 4.104 10 C 0.088 3.912 11 H 0.050 0.950 12 N -0.670 5.670 13 C 0.065 3.935 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.335 4.335 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.272 1.272 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.341 0.659 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.396 0.604 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -19.216 2.367 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.163 4.163 3 C -0.136 4.136 4 C -0.090 4.090 5 H 0.115 0.885 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.142 4.142 10 C -0.021 4.021 11 H 0.068 0.932 12 N -0.305 5.305 13 C -0.067 4.067 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.197 1.197 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.143 0.857 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.450 -18.944 3.257 19.377 hybrid contribution -0.284 1.036 -1.162 1.583 sum 2.166 -17.907 2.095 18.159 Atomic orbital electron populations 1.23968 0.96346 1.01993 1.01893 1.22948 0.95903 0.98278 0.99174 1.20894 0.98282 0.95752 0.98645 1.21208 0.96261 0.97171 0.94361 0.88546 1.21452 0.97734 1.01047 0.94013 1.21449 0.97751 0.97806 0.97690 1.21368 0.98483 0.98278 0.96869 1.21525 0.96739 1.01678 0.94249 1.21692 0.93687 0.88931 0.97775 0.93191 1.60180 1.06027 1.03579 1.60671 1.21564 0.96853 0.89660 0.98646 1.20903 0.88767 0.85230 0.82501 1.90486 1.25889 1.85174 1.49354 1.41932 1.18697 1.08578 1.51897 1.19628 1.00478 0.89189 1.37153 0.90419 1.26032 0.98296 1.01108 0.95747 1.69668 1.20593 1.27640 1.38272 0.84995 0.77876 0.76857 0.78644 1.19771 1.19383 1.19685 0.89838 0.87168 0.85677 0.90734 0.93189 0.93751 0.91666 0.90826 0.92622 0.92318 0.93645 0.89932 0.93100 0.83744 0.88322 0.92080 0.77047 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.84 14.32 67.79 0.97 -2.87 16 2 C -0.15 -2.60 8.50 25.65 0.22 -2.38 16 3 C -0.10 -2.03 4.78 29.85 0.14 -1.89 16 4 C -0.07 -1.42 1.95 -10.79 -0.02 -1.44 16 5 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 6 C -0.10 -2.31 4.86 30.59 0.15 -2.16 16 7 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 8 C -0.11 -2.69 5.77 30.59 0.18 -2.52 16 9 C -0.10 -2.29 5.53 30.60 0.17 -2.12 16 10 C 0.09 2.08 2.30 44.91 0.10 2.18 16 11 H 0.05 1.10 7.80 -2.39 -0.02 1.09 16 12 N -0.67 -21.50 4.45 -495.56 -2.21 -23.70 16 13 C 0.07 2.32 5.96 85.56 0.51 2.83 16 14 C 0.44 21.42 7.82 87.66 0.69 22.10 16 15 O -0.62 -35.32 15.78 -3.09 -0.05 -35.37 16 16 N -0.57 -30.13 5.29 -306.97 -1.62 -31.75 16 17 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 21 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H 0.08 1.78 7.84 -2.91 -0.02 1.76 16 26 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 27 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.27 6.08 -2.39 -0.01 1.26 16 30 H 0.04 1.26 7.48 -2.38 -0.02 1.25 16 31 H 0.06 1.30 7.38 -2.39 -0.02 1.28 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.42 7.60 -2.38 -0.02 1.41 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.22 7.46 -2.39 -0.02 1.20 16 38 H 0.34 11.79 5.79 -89.69 -0.52 11.27 16 39 H 0.10 3.24 7.44 -2.39 -0.02 3.22 16 40 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 41 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 42 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -65.56 333.57 2.75 -62.81 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -0.25 Total: 41.61 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.57 Total: -9.08 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.54 Total: -105.51 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.05 Total: -35.37 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.56 2.75 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595604473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.128 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds