Wall clock time and date at job start Mon Mar 30 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.27407 * 324.36271 * 15 14 12 17 17 C 1.54586 * 110.31077 * 202.16706 * 15 14 12 18 18 C 1.54936 * 102.92329 * 219.12073 * 17 15 14 19 19 H 1.08998 * 110.81606 * 278.91566 * 18 17 15 20 20 C 1.53005 * 110.66741 * 155.84552 * 18 17 15 21 21 N 1.48530 * 103.22483 * 37.41810 * 18 17 15 22 22 C 1.46907 * 111.00256 * 200.27870 * 21 18 17 23 23 C 1.52998 * 117.49743 * 246.01758 * 22 21 18 24 24 C 1.52990 * 117.50132 * 177.35471 * 22 21 18 25 25 C 1.47908 * 105.81806 * 320.78819 * 21 18 17 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 31 31 H 1.09003 * 110.72736 * 337.48154 * 17 15 14 32 32 H 1.09005 * 110.72468 * 100.76818 * 17 15 14 33 33 H 1.08998 * 109.47238 * 306.19941 * 20 18 17 34 34 H 1.08999 * 109.46983 * 66.19709 * 20 18 17 35 35 H 1.09003 * 109.47042 * 186.19541 * 20 18 17 36 36 H 1.09001 * 115.54728 * 31.68212 * 22 21 18 37 37 H 1.08997 * 117.49957 * 359.97438 * 23 22 21 38 38 H 1.09005 * 117.49718 * 145.02399 * 23 22 21 39 39 H 1.09005 * 117.50317 * 214.97923 * 24 22 21 40 40 H 1.09008 * 117.50113 * 359.97438 * 24 22 21 41 41 H 1.08995 * 109.91566 * 265.97786 * 25 21 18 42 42 H 1.09001 * 110.07731 * 144.77815 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 1 2.2271 -2.0162 3.4795 17 6 1.2948 -0.6141 4.8641 18 6 2.3131 -0.4717 6.0231 19 1 2.5974 -1.4497 6.4113 20 6 1.7416 0.4051 7.1393 21 7 3.4732 0.1931 5.3764 22 6 4.6999 -0.0101 6.1589 23 6 5.3378 1.2214 6.8049 24 6 6.0014 0.5618 5.5934 25 6 3.5926 -0.4191 4.0353 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7089 1.1613 -3.4844 30 1 1.1494 0.5389 2.5436 31 1 0.7576 0.3210 4.7055 32 1 0.6000 -1.4310 5.0594 33 1 1.4146 1.3574 6.7219 34 1 0.8928 -0.1003 7.5998 35 1 2.5104 0.5828 7.8913 36 1 4.7590 -0.9521 6.7041 37 1 4.8476 2.1823 6.6491 38 1 5.8171 1.0894 7.7750 39 1 6.9170 -0.0037 5.7669 40 1 5.9476 1.0885 4.6405 41 1 4.3019 -1.2460 4.0664 42 1 3.9230 0.3263 3.3118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597363293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:05 Heat of formation + Delta-G solvation = -13.401115 kcal Electronic energy + Delta-G solvation = -20700.243527 eV Core-core repulsion = 17680.677393 eV Total energy + Delta-G solvation = -3019.566134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85347 -38.37043 -36.23503 -33.70316 -33.48200 -31.04558 -30.49667 -28.77209 -25.56560 -25.09820 -23.09301 -22.41446 -21.61700 -20.64979 -20.04083 -19.13233 -16.71319 -16.35349 -15.96280 -15.69321 -15.14888 -14.75014 -14.36428 -14.01795 -13.48271 -13.27857 -13.19731 -12.61529 -12.49368 -12.39250 -12.06090 -11.80334 -11.62476 -11.51437 -11.29524 -11.23431 -11.00415 -10.78015 -10.68395 -10.61219 -10.44500 -10.22516 -10.17076 -9.92918 -8.92927 -8.58748 -8.49132 -8.38255 -8.29140 -6.00348 -4.03167 3.34016 3.41457 3.49738 3.58734 3.75192 3.77036 3.94748 4.49545 4.57523 4.66225 4.81239 4.89082 4.98772 5.15863 5.24663 5.32677 5.35862 5.39925 5.49142 5.54676 5.68386 5.70760 5.79053 5.88418 5.91347 6.01308 6.07520 6.15604 6.18843 6.35149 6.65332 6.83242 6.87126 6.96475 7.05334 7.17017 7.51688 7.79129 8.02695 8.19201 8.49737 9.06362 9.28661 9.62437 11.07334 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.004184 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.073222 B = 6690.140577 C = 7180.257458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.736 5.736 15 C 0.137 3.863 16 H 0.088 0.912 17 C -0.125 4.125 18 C 0.065 3.935 19 H 0.054 0.946 20 C -0.133 4.133 21 N -0.485 5.485 22 C -0.002 4.002 23 C -0.162 4.162 24 C -0.175 4.175 25 C 0.031 3.969 26 H 0.092 0.908 27 H 0.012 0.988 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.397 0.603 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 0.934 19.451 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.390 5.390 15 C 0.030 3.970 16 H 0.106 0.894 17 C -0.163 4.163 18 C -0.044 4.044 19 H 0.072 0.928 20 C -0.190 4.190 21 N -0.210 5.210 22 C -0.111 4.111 23 C -0.200 4.200 24 C -0.212 4.212 25 C -0.097 4.097 26 H 0.111 0.889 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.231 0.769 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.657 0.865 19.158 19.360 hybrid contribution 0.252 -0.899 -0.708 1.172 sum 2.909 -0.034 18.449 18.677 Atomic orbital electron populations 1.21732 0.96568 0.99733 1.00910 1.18882 0.94141 0.96852 0.89425 0.93010 1.21192 1.30774 1.12724 0.89018 0.90775 1.24951 0.95170 0.95080 0.99101 1.69885 1.37272 1.23138 1.23364 0.86417 0.78614 0.79789 0.82554 1.19591 1.21083 1.21066 1.21998 0.78317 0.84161 0.84571 1.90524 1.38022 1.26972 1.86799 1.46370 1.55176 1.32369 1.05109 1.21588 0.92162 0.97839 0.85381 0.89386 1.22850 0.97302 1.02755 0.93422 1.22733 0.90907 0.95966 0.94750 0.92833 1.21645 1.00140 1.00004 0.97244 1.64573 1.01628 1.52972 1.01815 1.22575 0.90174 0.96645 1.01754 1.23025 1.02922 0.97566 0.96486 1.23046 0.95184 1.04050 0.98922 1.23301 0.97506 0.98487 0.90442 0.88898 0.96908 0.95078 0.93068 0.76865 0.89903 0.90447 0.91819 0.92438 0.92624 0.89498 0.88221 0.89086 0.88851 0.88219 0.93237 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.52 11.85 7.14 -10.98 -0.08 11.77 16 13 O -0.55 -14.28 15.16 5.56 0.08 -14.20 16 14 N -0.74 -12.85 4.92 -52.50 -0.26 -13.10 16 15 C 0.14 2.06 3.30 -66.58 -0.22 1.84 16 16 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 17 C -0.12 -1.43 6.21 -24.88 -0.15 -1.58 16 18 C 0.06 0.69 2.92 -65.79 -0.19 0.50 16 19 H 0.05 0.56 7.83 -51.93 -0.41 0.15 16 20 C -0.13 -1.18 9.51 37.16 0.35 -0.83 16 21 N -0.49 -5.95 5.13 -214.73 -1.10 -7.05 16 22 C 0.00 -0.02 4.85 -67.71 -0.33 -0.35 16 23 C -0.16 -1.54 10.46 -26.69 -0.28 -1.82 16 24 C -0.17 -1.82 9.95 -26.70 -0.27 -2.09 16 25 C 0.03 0.46 6.05 -2.75 -0.02 0.44 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.40 6.13 7.76 -40.82 -0.32 5.82 16 31 H 0.08 0.92 7.62 -51.93 -0.40 0.52 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.48 8.05 -51.93 -0.42 0.07 16 36 H 0.09 0.89 7.86 -51.93 -0.41 0.49 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.17 8.12 -51.92 -0.42 0.75 16 41 H 0.05 0.75 7.77 -51.93 -0.40 0.34 16 42 H 0.09 1.42 7.92 -51.93 -0.41 1.01 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -30.71 337.33 -9.22 -39.93 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.16 Total: 4.53 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.48 Total: -7.41 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.73 Total: -44.90 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.71 -9.22 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597363293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.526 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds