Wall clock time and date at job start Mon Mar 30 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.27407 * 324.36271 * 15 14 12 17 17 C 1.54586 * 110.31077 * 202.16706 * 15 14 12 18 18 C 1.54936 * 102.92329 * 219.12073 * 17 15 14 19 19 H 1.08998 * 110.81606 * 278.91566 * 18 17 15 20 20 C 1.53005 * 110.66741 * 155.84552 * 18 17 15 21 21 N 1.48530 * 103.22483 * 37.41810 * 18 17 15 22 22 C 1.46907 * 111.00256 * 200.27870 * 21 18 17 23 23 C 1.52998 * 117.49743 * 246.01758 * 22 21 18 24 24 C 1.52990 * 117.50132 * 177.35471 * 22 21 18 25 25 C 1.47908 * 105.81806 * 320.78819 * 21 18 17 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 31 31 H 1.09003 * 110.72736 * 337.48154 * 17 15 14 32 32 H 1.09005 * 110.72468 * 100.76818 * 17 15 14 33 33 H 1.08998 * 109.47238 * 306.19941 * 20 18 17 34 34 H 1.08999 * 109.46983 * 66.19709 * 20 18 17 35 35 H 1.09003 * 109.47042 * 186.19541 * 20 18 17 36 36 H 1.09001 * 115.54728 * 31.68212 * 22 21 18 37 37 H 1.08997 * 117.49957 * 359.97438 * 23 22 21 38 38 H 1.09005 * 117.49718 * 145.02399 * 23 22 21 39 39 H 1.09005 * 117.50317 * 214.97923 * 24 22 21 40 40 H 1.09008 * 117.50113 * 359.97438 * 24 22 21 41 41 H 1.08995 * 109.91566 * 265.97786 * 25 21 18 42 42 H 1.09001 * 110.07731 * 144.77815 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 1 2.2271 -2.0162 3.4795 17 6 1.2948 -0.6141 4.8641 18 6 2.3131 -0.4717 6.0231 19 1 2.5974 -1.4497 6.4113 20 6 1.7416 0.4051 7.1393 21 7 3.4732 0.1931 5.3764 22 6 4.6999 -0.0101 6.1589 23 6 5.3378 1.2214 6.8049 24 6 6.0014 0.5618 5.5934 25 6 3.5926 -0.4191 4.0353 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7089 1.1613 -3.4844 30 1 1.1494 0.5389 2.5436 31 1 0.7576 0.3210 4.7055 32 1 0.6000 -1.4310 5.0594 33 1 1.4146 1.3574 6.7219 34 1 0.8928 -0.1003 7.5998 35 1 2.5104 0.5828 7.8913 36 1 4.7590 -0.9521 6.7041 37 1 4.8476 2.1823 6.6491 38 1 5.8171 1.0894 7.7750 39 1 6.9170 -0.0037 5.7669 40 1 5.9476 1.0885 4.6405 41 1 4.3019 -1.2460 4.0664 42 1 3.9230 0.3263 3.3118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597363293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:05 Heat of formation + Delta-G solvation = -33.729158 kcal Electronic energy + Delta-G solvation = -20701.125017 eV Core-core repulsion = 17680.677393 eV Total energy + Delta-G solvation = -3020.447624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12268 -39.85246 -37.25224 -35.76124 -34.90275 -32.62294 -31.79538 -30.04785 -27.19695 -26.51838 -24.77236 -23.29978 -22.72499 -21.69420 -21.35534 -20.57333 -18.35721 -17.91770 -17.44800 -17.13605 -16.48877 -16.10615 -15.74648 -15.63173 -14.90095 -14.50685 -14.42574 -14.22746 -13.78790 -13.52685 -13.32881 -13.03517 -12.96976 -12.70676 -12.64949 -12.57226 -12.48752 -12.33446 -12.18001 -12.11227 -12.02279 -11.70631 -11.29188 -11.04734 -11.01970 -10.59865 -10.29075 -9.97138 -9.42881 -8.15015 -6.25288 1.38929 1.40809 1.54337 1.92773 2.33414 2.51073 2.74171 2.92540 3.14435 3.58616 3.63252 3.98164 4.03559 4.08372 4.15747 4.28798 4.32888 4.41381 4.49510 4.67508 4.74583 4.76159 4.77898 4.81564 4.95493 4.95986 4.99337 5.02318 5.05203 5.08389 5.18182 5.29745 5.43380 5.50566 5.65596 5.76339 5.83075 5.95812 6.14623 6.22358 6.75042 6.87342 7.40406 7.55816 8.91002 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.004184 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.073222 B = 6690.140577 C = 7180.257458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.523 3.477 13 O -0.588 6.588 14 N -0.715 5.715 15 C 0.132 3.868 16 H 0.070 0.930 17 C -0.115 4.115 18 C 0.066 3.934 19 H 0.060 0.940 20 C -0.126 4.126 21 N -0.489 5.489 22 C -0.015 4.015 23 C -0.143 4.143 24 C -0.185 4.185 25 C 0.040 3.960 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.265 0.735 30 H 0.410 0.590 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 1.297 21.339 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.312 3.688 13 O -0.467 6.467 14 N -0.368 5.368 15 C 0.026 3.974 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.042 4.042 19 H 0.078 0.922 20 C -0.184 4.184 21 N -0.214 5.214 22 C -0.124 4.124 23 C -0.181 4.181 24 C -0.222 4.222 25 C -0.089 4.089 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.981 1.270 21.090 21.221 hybrid contribution 0.479 -0.976 -1.243 1.651 sum 2.460 0.294 19.847 20.001 Atomic orbital electron populations 1.21541 0.94914 0.99413 1.01738 1.18821 0.95472 0.95831 0.89721 0.94300 1.21316 1.31474 1.12644 0.91174 0.93450 1.25594 0.95218 0.95754 1.01412 1.69959 1.37299 1.23576 1.24219 0.85551 0.78371 0.78568 0.79441 1.20521 1.19833 1.19980 1.21548 0.78049 0.83561 0.85661 1.90501 1.39944 1.28746 1.87536 1.46084 1.54056 1.32252 1.04372 1.21763 0.93604 0.96535 0.85505 0.91204 1.22860 0.97124 1.03829 0.91471 1.22839 0.89867 0.96704 0.94834 0.92203 1.21606 1.00799 0.99475 0.96480 1.64589 1.02972 1.52897 1.00938 1.22711 0.89626 0.97901 1.02167 1.23065 1.01595 0.96469 0.96921 1.23061 0.95787 1.04625 0.98732 1.23047 0.96805 0.97311 0.91741 0.91157 0.92875 0.95823 0.92619 0.75365 0.88974 0.88674 0.92279 0.90596 0.92188 0.88531 0.88758 0.86737 0.87558 0.90217 0.94301 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 2 C 0.02 1.16 2.64 -12.28 -0.03 1.13 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -31.07 8.37 25.60 0.21 -30.85 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.66 11.32 21.45 0.24 -51.42 16 8 Si 0.95 45.49 29.54 68.60 2.03 47.51 16 9 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.52 24.33 7.14 87.66 0.63 24.96 16 13 O -0.59 -31.82 15.16 -3.03 -0.05 -31.87 16 14 N -0.71 -24.71 4.92 -438.40 -2.16 -26.87 16 15 C 0.13 3.91 3.30 45.87 0.15 4.06 16 16 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16 17 C -0.11 -2.35 6.21 31.80 0.20 -2.15 16 18 C 0.07 1.24 2.92 45.26 0.13 1.37 16 19 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 20 C -0.13 -1.84 9.51 71.98 0.68 -1.15 16 21 N -0.49 -11.40 5.13 -833.26 -4.27 -15.67 16 22 C -0.02 -0.30 4.85 44.91 0.22 -0.09 16 23 C -0.14 -2.40 10.46 30.62 0.32 -2.08 16 24 C -0.18 -3.72 9.95 30.62 0.30 -3.42 16 25 C 0.04 1.18 6.05 86.44 0.52 1.71 16 26 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 27 H 0.05 1.94 7.56 -2.39 -0.02 1.93 16 28 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.41 12.07 7.76 -92.71 -0.72 11.35 16 31 H 0.09 1.76 7.62 -2.39 -0.02 1.74 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.84 8.05 -2.39 -0.02 0.82 16 36 H 0.10 1.78 7.86 -2.39 -0.02 1.76 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.08 1.92 8.12 -2.38 -0.02 1.91 16 41 H 0.04 1.21 7.77 -2.39 -0.02 1.19 16 42 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 Total: -1.00 -67.64 337.33 0.49 -67.15 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.27 Total: 20.92 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.43 Total: -9.75 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -6.19 Total: -93.96 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.64 0.49 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597363293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.418 kcal (2) G-P(sol) polarization free energy of solvation -67.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds