Wall clock time and date at job start Mon Mar 30 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46625 * 2 1 4 4 N 1.46898 * 109.47062 * 120.00223 * 2 1 3 5 5 C 1.46903 * 111.00016 * 69.23017 * 4 2 1 6 6 C 1.50696 * 109.47136 * 66.04226 * 5 4 2 7 7 H 1.08005 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99803 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46915 * 120.00063 * 10 8 6 13 13 H 1.48492 * 109.47340 * 240.00389 * 10 8 6 14 14 C 1.46901 * 111.00047 * 305.27289 * 4 2 1 15 15 H 1.08999 * 110.43052 * 329.25276 * 14 4 2 16 16 C 1.54620 * 110.48580 * 206.70568 * 14 4 2 17 17 C 1.54485 * 101.76282 * 216.52373 * 16 14 4 18 18 N 1.46757 * 105.47388 * 25.42034 * 17 16 14 19 19 C 1.46505 * 124.35153 * 162.98549 * 18 17 16 20 20 C 1.52996 * 117.49729 * 188.74328 * 19 18 17 21 21 C 1.52992 * 117.49816 * 120.08342 * 19 18 17 22 22 C 1.34421 * 111.30221 * 342.97777 * 18 17 16 23 23 O 1.21281 * 124.94415 * 180.44238 * 22 18 17 24 24 H 1.08997 * 109.47153 * 302.45854 * 1 2 3 25 25 H 1.09004 * 109.47336 * 62.46439 * 1 2 3 26 26 H 1.09005 * 109.46605 * 182.45591 * 1 2 3 27 27 H 1.09004 * 109.46737 * 240.00200 * 2 1 3 28 28 H 1.09006 * 109.46898 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47563 * 300.00092 * 3 2 1 30 30 H 1.08995 * 109.47321 * 60.00743 * 3 2 1 31 31 H 1.09000 * 109.46930 * 186.04393 * 5 4 2 32 32 H 1.09005 * 109.47081 * 306.04506 * 5 4 2 33 33 H 0.97007 * 119.99944 * 180.02562 * 9 8 6 34 34 H 1.09001 * 110.96992 * 334.64434 * 16 14 4 35 35 H 1.08996 * 110.97278 * 98.40552 * 16 14 4 36 36 H 1.09002 * 110.24120 * 144.41458 * 17 16 14 37 37 H 1.08999 * 110.24667 * 266.40999 * 17 16 14 38 38 H 1.08999 * 115.54599 * 334.40898 * 19 18 17 39 39 H 1.08995 * 117.50355 * 359.97438 * 20 19 18 40 40 H 1.09003 * 117.49541 * 145.02062 * 20 19 18 41 41 H 1.09007 * 117.49484 * 214.97808 * 21 19 18 42 42 H 1.08995 * 117.50449 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7366 -2.1323 1.1284 6 6 2.5358 -2.7467 0.0082 7 1 3.1890 -2.1295 -0.5908 8 6 2.4338 -4.0970 -0.2512 9 7 1.6388 -4.8486 0.4786 10 14 3.4239 -4.8586 -1.6403 11 1 4.2346 -3.8067 -2.3048 12 1 4.3244 -5.9039 -1.0910 13 1 2.5002 -5.4705 -2.6289 14 6 1.4485 -0.1031 2.4177 15 1 1.2580 0.9603 2.2727 16 6 2.3942 -0.3246 3.6207 17 6 1.3905 -0.5622 4.7708 18 7 0.1733 -1.0723 4.1290 19 6 -0.9068 -1.7640 4.8371 20 6 -2.0057 -2.4101 3.9911 21 6 -2.3009 -1.1357 4.7860 22 6 0.1765 -0.8232 2.8081 23 8 -0.7112 -1.1304 2.0411 24 1 -0.3633 0.5515 0.8671 25 1 -0.3634 0.4751 -0.9113 26 1 -0.3633 -1.0268 0.0440 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.0117 -2.6036 2.0720 32 1 0.6735 -2.2848 0.9424 33 1 1.5674 -5.7987 0.2962 34 1 3.0242 -1.2004 3.4656 35 1 3.0003 0.5616 3.8088 36 1 1.7856 -1.2993 5.4699 37 1 1.1805 0.3742 5.2877 38 1 -0.6165 -2.2709 5.7573 39 1 -1.9254 -2.3202 2.9078 40 1 -2.4388 -3.3419 4.3551 41 1 -2.9280 -1.2296 5.6726 42 1 -2.4144 -0.2076 4.2260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686607582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:37 Heat of formation + Delta-G solvation = 18.508901 kcal Electronic energy + Delta-G solvation = -22158.656672 eV Core-core repulsion = 19140.474260 eV Total energy + Delta-G solvation = -3018.182411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.64346 -37.50925 -35.94441 -35.41056 -32.72199 -31.01774 -29.42390 -27.36014 -26.35682 -25.26870 -22.73450 -22.29502 -22.05566 -21.44200 -19.38012 -18.02116 -16.88955 -16.27844 -15.63408 -15.20054 -14.96868 -14.64328 -14.25639 -13.93521 -13.49832 -13.22242 -13.00046 -12.82509 -12.36380 -12.06477 -11.87774 -11.70390 -11.34637 -11.26626 -11.15770 -10.98234 -10.77094 -10.68929 -10.58017 -10.54516 -10.36864 -10.17749 -9.87698 -9.65110 -9.14687 -8.80402 -8.37857 -8.11810 -7.12716 -5.95139 -3.95908 3.05574 3.24188 3.34330 3.41583 3.46138 4.11539 4.45465 4.67450 4.83913 4.97646 5.05684 5.19567 5.26385 5.36422 5.40538 5.47802 5.62757 5.63306 5.77642 5.81327 5.88368 5.93137 6.07070 6.19277 6.23267 6.29077 6.35032 6.49411 6.53546 6.58321 6.72087 6.92213 7.05374 7.25283 7.34586 7.55047 7.67788 7.83815 8.12286 8.25201 8.54901 8.76864 9.11502 9.66689 11.15272 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.007511 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.142376 B = 3726.939362 C = 4382.158319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 C -0.141 4.141 4 N -0.502 5.502 5 C 0.177 3.823 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.048 3.952 15 H 0.102 0.898 16 C -0.122 4.122 17 C 0.108 3.892 18 N -0.597 5.597 19 C 0.085 3.915 20 C -0.186 4.186 21 C -0.196 4.196 22 C 0.499 3.501 23 O -0.508 6.508 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 10.288 9.272 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 C -0.199 4.199 4 N -0.226 5.226 5 C 0.053 3.947 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.065 4.065 15 H 0.120 0.880 16 C -0.160 4.160 17 C -0.016 4.016 18 N -0.331 5.331 19 C -0.020 4.020 20 C -0.224 4.224 21 C -0.235 4.235 22 C 0.286 3.714 23 O -0.383 6.383 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.326 9.964 8.907 13.565 hybrid contribution -0.388 -0.761 -0.520 1.000 sum -2.715 9.203 8.387 12.744 Atomic orbital electron populations 1.22678 0.96924 1.03842 0.99265 1.21693 0.93077 0.93495 0.95123 1.21903 1.01341 0.96440 1.00180 1.62782 1.54426 1.06816 0.98529 1.20038 0.97288 0.80030 0.97353 1.21162 1.25022 0.92981 1.15214 0.91976 1.24965 0.95682 0.97261 0.96649 1.69994 1.37907 1.05815 1.39665 0.86503 0.79908 0.79212 0.82157 1.19690 1.21152 1.21189 1.22587 0.90619 0.99546 0.93702 0.87993 1.22667 0.97084 1.04051 0.92190 1.22051 0.84477 0.98730 0.96294 1.47686 1.19589 1.57342 1.08501 1.21398 0.82501 1.00052 0.98002 1.23731 1.00045 0.95748 1.02831 1.23320 0.99008 0.98373 1.02794 1.21954 0.88932 0.79354 0.81127 1.90602 1.41082 1.53080 1.53486 0.93534 0.94911 0.90057 0.88910 0.92357 0.93194 0.93764 0.95906 0.95661 0.93164 0.88808 0.89634 0.90827 0.91704 0.86078 0.84730 0.88942 0.88831 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 7.26 37.16 0.27 -3.12 16 2 C 0.07 1.48 2.77 -67.71 -0.19 1.30 16 3 C -0.14 -2.21 9.16 37.16 0.34 -1.87 16 4 N -0.50 -10.64 4.36 -220.16 -0.96 -11.60 16 5 C 0.18 4.65 3.44 -4.98 -0.02 4.63 16 6 C -0.51 -14.32 8.38 -34.44 -0.29 -14.61 16 7 H 0.06 1.74 7.17 -52.48 -0.38 1.36 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.05 0.86 2.21 -67.72 -0.15 0.71 16 15 H 0.10 1.63 5.53 -51.93 -0.29 1.34 16 16 C -0.12 -1.76 6.68 -25.10 -0.17 -1.93 16 17 C 0.11 1.38 7.35 -3.12 -0.02 1.36 16 18 N -0.60 -9.75 3.27 -164.85 -0.54 -10.29 16 19 C 0.08 1.26 6.88 -67.93 -0.47 0.79 16 20 C -0.19 -3.03 9.77 -26.70 -0.26 -3.29 16 21 C -0.20 -2.67 10.34 -26.70 -0.28 -2.94 16 22 C 0.50 9.66 5.53 -10.86 -0.06 9.60 16 23 O -0.51 -11.27 8.63 5.56 0.05 -11.23 16 24 H 0.05 0.90 5.65 -51.93 -0.29 0.61 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.95 5.22 -51.93 -0.27 1.68 16 27 H 0.09 2.06 6.66 -51.93 -0.35 1.71 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.63 6.23 -51.93 -0.32 0.31 16 31 H 0.02 0.65 7.26 -51.93 -0.38 0.28 16 32 H 0.03 0.75 4.67 -51.93 -0.24 0.50 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.58 7.47 -51.93 -0.39 1.19 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.13 2.74 5.30 -51.93 -0.28 2.46 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -31.87 316.55 -8.89 -40.77 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.54 Total: 4.88 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.38 Total: -7.85 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.76 Total: -48.32 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.05 Total: -11.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.87 -8.89 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686607582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.276 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds