Wall clock time and date at job start Mon Mar 30 2020 05:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46625 * 2 1 4 4 N 1.46898 * 109.47062 * 120.00223 * 2 1 3 5 5 C 1.46903 * 111.00016 * 69.23017 * 4 2 1 6 6 C 1.50696 * 109.47136 * 66.04226 * 5 4 2 7 7 H 1.08005 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99803 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46915 * 120.00063 * 10 8 6 13 13 H 1.48492 * 109.47340 * 240.00389 * 10 8 6 14 14 C 1.46901 * 111.00047 * 305.27289 * 4 2 1 15 15 H 1.08999 * 110.43052 * 329.25276 * 14 4 2 16 16 C 1.54620 * 110.48580 * 206.70568 * 14 4 2 17 17 C 1.54485 * 101.76282 * 216.52373 * 16 14 4 18 18 N 1.46757 * 105.47388 * 25.42034 * 17 16 14 19 19 C 1.46505 * 124.35153 * 162.98549 * 18 17 16 20 20 C 1.52996 * 117.49729 * 188.74328 * 19 18 17 21 21 C 1.52992 * 117.49816 * 120.08342 * 19 18 17 22 22 C 1.34421 * 111.30221 * 342.97777 * 18 17 16 23 23 O 1.21281 * 124.94415 * 180.44238 * 22 18 17 24 24 H 1.08997 * 109.47153 * 302.45854 * 1 2 3 25 25 H 1.09004 * 109.47336 * 62.46439 * 1 2 3 26 26 H 1.09005 * 109.46605 * 182.45591 * 1 2 3 27 27 H 1.09004 * 109.46737 * 240.00200 * 2 1 3 28 28 H 1.09006 * 109.46898 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47563 * 300.00092 * 3 2 1 30 30 H 1.08995 * 109.47321 * 60.00743 * 3 2 1 31 31 H 1.09000 * 109.46930 * 186.04393 * 5 4 2 32 32 H 1.09005 * 109.47081 * 306.04506 * 5 4 2 33 33 H 0.97007 * 119.99944 * 180.02562 * 9 8 6 34 34 H 1.09001 * 110.96992 * 334.64434 * 16 14 4 35 35 H 1.08996 * 110.97278 * 98.40552 * 16 14 4 36 36 H 1.09002 * 110.24120 * 144.41458 * 17 16 14 37 37 H 1.08999 * 110.24667 * 266.40999 * 17 16 14 38 38 H 1.08999 * 115.54599 * 334.40898 * 19 18 17 39 39 H 1.08995 * 117.50355 * 359.97438 * 20 19 18 40 40 H 1.09003 * 117.49541 * 145.02062 * 20 19 18 41 41 H 1.09007 * 117.49484 * 214.97808 * 21 19 18 42 42 H 1.08995 * 117.50449 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7366 -2.1323 1.1284 6 6 2.5358 -2.7467 0.0082 7 1 3.1890 -2.1295 -0.5908 8 6 2.4338 -4.0970 -0.2512 9 7 1.6388 -4.8486 0.4786 10 14 3.4239 -4.8586 -1.6403 11 1 4.2346 -3.8067 -2.3048 12 1 4.3244 -5.9039 -1.0910 13 1 2.5002 -5.4705 -2.6289 14 6 1.4485 -0.1031 2.4177 15 1 1.2580 0.9603 2.2727 16 6 2.3942 -0.3246 3.6207 17 6 1.3905 -0.5622 4.7708 18 7 0.1733 -1.0723 4.1290 19 6 -0.9068 -1.7640 4.8371 20 6 -2.0057 -2.4101 3.9911 21 6 -2.3009 -1.1357 4.7860 22 6 0.1765 -0.8232 2.8081 23 8 -0.7112 -1.1304 2.0411 24 1 -0.3633 0.5515 0.8671 25 1 -0.3634 0.4751 -0.9113 26 1 -0.3633 -1.0268 0.0440 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.0117 -2.6036 2.0720 32 1 0.6735 -2.2848 0.9424 33 1 1.5674 -5.7987 0.2962 34 1 3.0242 -1.2004 3.4656 35 1 3.0003 0.5616 3.8088 36 1 1.7856 -1.2993 5.4699 37 1 1.1805 0.3742 5.2877 38 1 -0.6165 -2.2709 5.7573 39 1 -1.9254 -2.3202 2.9078 40 1 -2.4388 -3.3419 4.3551 41 1 -2.9280 -1.2296 5.6726 42 1 -2.4144 -0.2076 4.2260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686607582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:36 Heat of formation + Delta-G solvation = -3.258333 kcal Electronic energy + Delta-G solvation = -22159.600570 eV Core-core repulsion = 19140.474260 eV Total energy + Delta-G solvation = -3019.126310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05059 -38.96507 -37.39674 -36.71963 -34.87919 -32.56340 -30.96984 -28.95799 -27.88403 -26.96747 -24.33184 -23.79375 -23.41243 -22.72235 -20.83897 -19.57333 -18.46601 -17.98679 -17.19731 -16.76182 -16.55322 -16.06481 -15.99412 -15.39970 -14.94259 -14.74209 -14.39380 -14.16760 -14.03305 -13.85457 -13.18306 -13.03896 -12.99399 -12.76638 -12.66359 -12.60256 -12.42321 -12.35586 -12.18538 -12.07342 -11.78463 -11.69160 -11.36549 -11.30600 -11.15564 -10.61095 -10.35590 -9.38903 -8.86436 -8.18306 -6.27762 1.37495 1.38268 1.51854 1.62063 2.04378 2.39153 2.92302 3.12182 3.17402 3.56035 3.75808 3.91966 4.00311 4.05049 4.06349 4.25414 4.29892 4.44185 4.47913 4.62975 4.65989 4.73081 4.77271 4.83850 4.88387 5.02291 5.05850 5.10243 5.13466 5.27222 5.29020 5.33773 5.39090 5.47291 5.63476 5.73550 5.86084 6.08830 6.21618 6.35076 6.62992 6.89940 7.33524 7.40607 8.92426 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.007511 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.142376 B = 3726.939362 C = 4382.158319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.070 3.930 3 C -0.128 4.128 4 N -0.504 5.504 5 C 0.206 3.794 6 C -0.520 4.520 7 H 0.062 0.938 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.283 1.283 14 C 0.042 3.958 15 H 0.126 0.874 16 C -0.115 4.115 17 C 0.107 3.893 18 N -0.601 5.601 19 C 0.078 3.922 20 C -0.218 4.218 21 C -0.164 4.164 22 C 0.480 3.520 23 O -0.548 6.548 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.063 0.937 31 H -0.010 1.010 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 12.338 10.702 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.038 4.038 3 C -0.185 4.185 4 N -0.227 5.227 5 C 0.080 3.920 6 C -0.558 4.558 7 H 0.080 0.920 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.209 1.209 14 C -0.071 4.071 15 H 0.144 0.856 16 C -0.153 4.153 17 C -0.015 4.015 18 N -0.334 5.334 19 C -0.025 4.025 20 C -0.256 4.256 21 C -0.203 4.203 22 C 0.268 3.732 23 O -0.426 6.426 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.008 0.992 32 H 0.006 0.994 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.142 12.043 10.373 15.935 hybrid contribution -0.807 -1.386 -0.936 1.857 sum -1.949 10.657 9.437 14.367 Atomic orbital electron populations 1.22464 0.97300 1.00995 1.00327 1.21760 0.92695 0.95914 0.93449 1.21781 1.01595 0.92990 1.02128 1.62699 1.55081 1.04223 1.00651 1.19440 0.94440 0.83236 0.94861 1.21526 1.25019 0.93487 1.15785 0.91988 1.25915 0.96762 0.97870 0.99333 1.70147 1.39587 1.06123 1.41606 0.85375 0.78363 0.78430 0.78700 1.18421 1.20234 1.20915 1.22831 0.90880 1.00182 0.93164 0.85629 1.22701 0.96878 1.04528 0.91205 1.22351 0.82423 1.01004 0.95680 1.47889 1.20930 1.56605 1.07936 1.21801 0.82598 1.00052 0.98087 1.23577 1.03237 0.98181 1.00594 1.23306 0.98341 0.95928 1.02709 1.22310 0.89094 0.79622 0.82176 1.90613 1.42498 1.54689 1.54814 0.92883 0.93185 0.94891 0.92057 0.91802 0.91201 0.91841 0.99164 0.99449 0.93086 0.91899 0.85550 0.89093 0.87673 0.82827 0.89499 0.87542 0.85102 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 7.26 71.98 0.52 -5.80 16 2 C 0.07 2.83 2.77 44.92 0.12 2.95 16 3 C -0.13 -3.69 9.16 71.98 0.66 -3.03 16 4 N -0.50 -21.78 4.36 -850.45 -3.71 -25.49 16 5 C 0.21 11.43 3.44 85.56 0.29 11.72 16 6 C -0.52 -30.66 8.38 25.60 0.21 -30.44 16 7 H 0.06 3.57 7.17 -2.91 -0.02 3.55 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 9 N -0.93 -59.26 13.29 21.45 0.28 -58.97 16 10 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.04 1.45 2.21 44.91 0.10 1.55 16 15 H 0.13 3.71 5.53 -2.39 -0.01 3.69 16 16 C -0.11 -3.09 6.68 31.65 0.21 -2.88 16 17 C 0.11 2.42 7.35 86.84 0.64 3.06 16 18 N -0.60 -19.14 3.27 -794.04 -2.60 -21.74 16 19 C 0.08 2.23 6.88 44.99 0.31 2.54 16 20 C -0.22 -7.34 9.77 30.62 0.30 -7.05 16 21 C -0.16 -4.23 10.34 30.61 0.32 -3.92 16 22 C 0.48 19.06 5.53 87.90 0.49 19.55 16 23 O -0.55 -26.07 8.63 -3.03 -0.03 -26.09 16 24 H 0.05 2.09 5.65 -2.39 -0.01 2.08 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.03 1.68 5.22 -2.38 -0.01 1.67 16 27 H 0.06 2.82 6.66 -2.38 -0.02 2.80 16 28 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.60 6.23 -2.39 -0.01 1.58 16 31 H -0.01 -0.59 7.26 -2.39 -0.02 -0.60 16 32 H -0.01 -0.77 4.67 -2.38 -0.01 -0.78 16 33 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.06 2.10 7.47 -2.39 -0.02 2.09 16 35 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.09 3.87 5.30 -2.39 -0.01 3.86 16 40 H 0.11 3.14 8.14 -2.39 -0.02 3.13 16 41 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -76.13 316.55 1.62 -74.51 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.01 Total: 20.94 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.64 Total: -11.37 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -6.02 Total: -106.20 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.03 Total: -26.09 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -76.13 1.62 -74.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686607582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.248 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds