Wall clock time and date at job start Mon Mar 30 2020 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46743 * 2 1 4 4 H 1.09005 * 110.33493 * 52.74757 * 3 2 1 5 5 N 1.47837 * 110.37592 * 290.36896 * 3 2 1 6 6 C 1.47446 * 108.56988 * 217.07653 * 5 3 2 7 7 C 1.54319 * 107.23008 * 0.99095 * 6 5 3 8 8 C 1.54914 * 110.36803 * 174.99581 * 3 2 1 9 9 H 1.09003 * 110.98924 * 37.77645 * 8 3 2 10 10 C 1.50701 * 110.99267 * 273.99071 * 8 3 2 11 11 O 1.21279 * 119.99527 * 351.80602 * 10 8 3 12 12 N 1.34777 * 120.00000 * 171.80441 * 10 8 3 13 13 C 1.46494 * 119.99923 * 185.84300 * 12 10 8 14 14 C 1.50702 * 109.47044 * 270.00023 * 13 12 10 15 15 H 1.07999 * 120.00017 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99543 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99740 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00577 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47593 * 89.99909 * 18 16 14 20 20 H 1.48499 * 109.47227 * 210.00441 * 18 16 14 21 21 H 1.48509 * 109.46740 * 330.00028 * 18 16 14 22 22 C 1.46503 * 119.99846 * 5.84058 * 12 10 8 23 23 C 1.52991 * 117.50064 * 245.18625 * 22 12 10 24 24 C 1.52993 * 60.00206 * 252.51149 * 23 22 12 25 25 H 1.08998 * 109.47310 * 299.99899 * 1 2 3 26 26 H 1.08998 * 109.46579 * 59.99957 * 1 2 3 27 27 H 1.08992 * 109.46647 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47310 * 240.00101 * 2 1 3 29 29 H 1.08998 * 109.46579 * 120.00043 * 2 1 3 30 30 H 1.00899 * 110.99906 * 94.80989 * 5 3 2 31 31 H 1.08998 * 109.88906 * 120.39355 * 6 5 3 32 32 H 1.08995 * 109.88895 * 241.42066 * 6 5 3 33 33 H 1.08996 * 110.71077 * 263.89994 * 7 6 5 34 34 H 1.09007 * 110.70482 * 140.66285 * 7 6 5 35 35 H 1.08998 * 109.46948 * 30.00276 * 13 12 10 36 36 H 1.09002 * 109.46938 * 149.99807 * 13 12 10 37 37 H 0.97000 * 119.99988 * 179.97438 * 17 16 14 38 38 H 1.09008 * 115.55941 * 30.87857 * 22 12 10 39 39 H 1.08998 * 117.49888 * 145.02299 * 23 22 12 40 40 H 1.08995 * 117.50020 * 0.02562 * 23 22 12 41 41 H 1.09005 * 117.50074 * 107.48699 * 24 23 22 42 42 H 1.09003 * 117.50425 * 252.51140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0059 0.8136 5 7 1.7568 2.0886 -1.2992 6 6 2.8874 2.9711 -1.6412 7 6 3.9268 2.8423 -0.5079 8 6 3.5837 1.4687 0.1267 9 1 4.0357 0.6533 -0.4380 10 6 4.0077 1.4208 1.5720 11 8 3.1779 1.5196 2.4509 12 7 5.3090 1.2682 1.8879 13 6 5.7076 1.0931 3.2866 14 6 5.9757 2.4410 3.9050 15 1 5.8611 3.3383 3.3149 16 6 6.3684 2.5286 5.2238 17 7 6.6029 3.7048 5.7633 18 14 6.5673 0.9767 6.2442 19 1 7.9607 0.4785 6.1212 20 1 6.2736 1.2794 7.6680 21 1 5.6253 -0.0618 5.7545 22 6 6.3249 1.2773 0.8323 23 6 7.1077 -0.0154 0.5941 24 6 7.7903 1.1802 1.2613 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8935 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8915 2.6065 -1.2645 31 1 3.3294 2.6579 -2.5870 32 1 2.5431 4.0025 -1.7165 33 1 3.8048 3.6443 0.2201 34 1 4.9392 2.8379 -0.9121 35 1 4.9065 0.5955 3.8331 36 1 6.6114 0.4855 3.3336 37 1 6.8787 3.7665 6.6912 38 1 6.0946 1.8937 -0.0367 39 1 7.3926 -0.2495 -0.4316 40 1 6.8667 -0.8728 1.2224 41 1 7.9985 1.1096 2.3290 42 1 8.5242 1.7328 0.6746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690879798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:27 Heat of formation + Delta-G solvation = -31.112232 kcal Electronic energy + Delta-G solvation = -21399.210510 eV Core-core repulsion = 18378.876365 eV Total energy + Delta-G solvation = -3020.334145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44951 -39.24507 -38.12763 -35.22562 -34.25653 -33.84079 -31.99850 -29.80535 -28.93910 -25.22458 -24.09490 -23.61577 -23.08800 -22.08756 -21.11143 -19.79288 -19.13047 -18.74227 -17.33604 -16.83727 -16.59510 -16.05393 -15.83360 -15.33911 -15.18827 -14.75258 -14.65610 -14.22718 -13.92944 -13.83187 -13.67062 -13.56586 -13.01809 -12.74525 -12.68911 -12.58931 -12.41363 -12.15054 -12.13977 -11.89835 -11.80990 -11.67092 -11.57954 -11.54458 -11.33169 -10.85261 -10.59749 -9.42946 -9.27109 -8.36769 -6.40814 1.26173 1.30859 1.40965 1.65289 2.13223 2.26780 2.95864 3.02102 3.12829 3.56452 3.58415 3.76943 3.86705 3.98344 4.16304 4.20209 4.21366 4.29679 4.35183 4.52259 4.59540 4.68666 4.75516 4.77573 4.84899 4.89178 4.92045 5.00518 5.09187 5.16324 5.17107 5.20528 5.31627 5.34476 5.41100 5.45074 5.58570 5.86693 6.20825 6.43152 6.59281 6.66249 7.18298 7.35975 8.80419 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.006082 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.574851 B = 4602.496568 C = 5033.867023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.095 3.905 4 H 0.034 0.966 5 N -0.670 5.670 6 C 0.055 3.945 7 C -0.131 4.131 8 C -0.103 4.103 9 H 0.127 0.873 10 C 0.511 3.489 11 O -0.589 6.589 12 N -0.573 5.573 13 C 0.226 3.774 14 C -0.524 4.524 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.249 1.249 20 H -0.280 1.280 21 H -0.259 1.259 22 C 0.047 3.953 23 C -0.169 4.169 24 C -0.186 4.186 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.346 0.654 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.014 0.986 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -7.867 -18.324 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.015 4.015 4 H 0.052 0.948 5 N -0.300 5.300 6 C -0.074 4.074 7 C -0.170 4.170 8 C -0.125 4.125 9 H 0.145 0.855 10 C 0.300 3.700 11 O -0.470 6.470 12 N -0.301 5.301 13 C 0.104 3.896 14 C -0.563 4.563 15 H 0.044 0.956 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.764 3.236 19 H -0.173 1.173 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.057 4.057 23 C -0.207 4.207 24 C -0.223 4.223 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.163 0.837 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.794 -8.270 -18.105 20.262 hybrid contribution 0.047 0.867 2.159 2.327 sum -3.747 -7.402 -15.946 17.975 Atomic orbital electron populations 1.21670 0.94709 1.02059 1.01540 1.21393 0.97075 0.94274 1.01257 1.22107 0.92184 0.96726 0.90452 0.94783 1.61871 1.05651 1.33584 1.28886 1.22644 0.90533 0.96251 0.97985 1.22851 1.02214 0.93959 0.97938 1.22424 0.97781 1.01431 0.90860 0.85511 1.20999 0.81664 0.75373 0.91962 1.90638 1.52435 1.51668 1.52229 1.47446 1.05819 1.69635 1.07218 1.19282 0.95205 0.95584 0.79531 1.21414 1.45469 0.92587 0.96794 0.95576 1.25795 0.94395 0.99598 0.98732 1.70046 1.48113 1.25814 1.14478 0.85808 0.80109 0.79639 0.78051 1.17344 1.20552 1.18323 1.22128 0.87383 1.03121 0.93029 1.23504 1.02222 0.91533 1.03435 1.23323 0.94358 1.02913 1.01727 0.94472 0.91115 0.91880 0.89975 0.94160 0.83726 0.88164 0.91659 0.93849 0.87807 0.96774 0.93565 0.92292 0.83577 0.84436 0.89669 0.90334 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.84 71.99 0.71 -2.43 16 2 C -0.10 -2.61 5.64 30.60 0.17 -2.44 16 3 C 0.10 2.68 2.43 45.39 0.11 2.79 16 4 H 0.03 1.20 7.28 -2.38 -0.02 1.19 16 5 N -0.67 -14.24 6.76 -482.45 -3.26 -17.50 16 6 C 0.05 1.04 7.58 86.65 0.66 1.69 16 7 C -0.13 -3.27 5.81 31.78 0.18 -3.08 16 8 C -0.10 -3.02 1.92 -10.15 -0.02 -3.04 16 9 H 0.13 3.11 7.80 -2.39 -0.02 3.09 16 10 C 0.51 21.41 6.98 87.66 0.61 22.02 16 11 O -0.59 -30.67 15.32 -3.03 -0.05 -30.72 16 12 N -0.57 -23.91 2.79 -802.16 -2.23 -26.15 16 13 C 0.23 11.32 3.58 85.63 0.31 11.62 16 14 C -0.52 -31.37 9.94 25.60 0.25 -31.12 16 15 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 16 C 0.01 0.76 5.47 84.65 0.46 1.23 16 17 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 18 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 19 H -0.25 -10.89 7.11 99.48 0.71 -10.19 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 22 C 0.05 1.44 5.64 44.99 0.25 1.69 16 23 C -0.17 -4.00 10.32 30.59 0.32 -3.68 16 24 C -0.19 -5.51 9.71 30.59 0.30 -5.21 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.35 7.95 -2.39 -0.02 1.33 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.35 6.55 8.91 -89.69 -0.80 5.75 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.04 1.36 8.03 -2.39 -0.02 1.34 16 34 H 0.10 2.08 6.21 -2.38 -0.01 2.06 16 35 H 0.01 0.78 6.57 -2.39 -0.02 0.76 16 36 H 0.05 2.13 5.63 -2.39 -0.01 2.12 16 37 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.15 3.61 5.08 -2.38 -0.01 3.60 16 39 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 2.91 6.27 -2.38 -0.01 2.90 16 42 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -76.73 331.29 1.11 -75.62 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.15 Total: 21.77 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.32 Total: -9.96 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -5.20 Total: -103.73 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -76.73 1.11 -75.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.508 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds