Wall clock time and date at job start Mon Mar 30 2020 05:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 H 1.08998 * 109.90559 * 55.49407 * 3 2 1 5 5 N 1.47902 * 109.92076 * 294.18226 * 3 2 1 6 6 C 1.48532 * 105.81933 * 215.32184 * 5 3 2 7 7 C 1.54935 * 103.23041 * 39.20311 * 6 5 3 8 8 C 1.53995 * 109.91026 * 176.59296 * 3 2 1 9 9 H 1.09004 * 110.30659 * 239.49407 * 8 3 2 10 10 C 1.50696 * 110.31547 * 1.56391 * 8 3 2 11 11 O 1.21284 * 120.00087 * 86.25851 * 10 8 3 12 12 N 1.34774 * 120.00072 * 266.26365 * 10 8 3 13 13 C 1.46506 * 120.00033 * 184.85973 * 12 10 8 14 14 C 1.50693 * 109.47213 * 89.99470 * 13 12 10 15 15 H 1.08001 * 120.00456 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99902 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00207 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47233 * 60.00442 * 18 16 14 20 20 H 1.48503 * 109.47262 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47344 * 300.00186 * 18 16 14 22 22 C 1.46498 * 120.00115 * 4.85092 * 12 10 8 23 23 C 1.52999 * 117.49996 * 183.53964 * 22 12 10 24 24 C 1.53005 * 117.49504 * 114.88004 * 22 12 10 25 25 H 1.09003 * 109.46940 * 299.99718 * 1 2 3 26 26 H 1.08998 * 109.47209 * 59.99507 * 1 2 3 27 27 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46271 * 240.00615 * 2 1 3 29 29 H 1.08998 * 109.47209 * 120.00493 * 2 1 3 30 30 H 1.00902 * 110.99542 * 335.82943 * 5 3 2 31 31 H 1.09008 * 110.66656 * 280.76955 * 6 5 3 32 32 H 1.09000 * 110.81259 * 157.71329 * 6 5 3 33 33 H 1.09000 * 110.72530 * 204.22604 * 7 6 5 34 34 H 1.09002 * 110.72030 * 80.94380 * 7 6 5 35 35 H 1.08999 * 109.46646 * 209.99586 * 13 12 10 36 36 H 1.09001 * 109.46872 * 329.99619 * 13 12 10 37 37 H 0.96997 * 120.00098 * 179.97438 * 17 16 14 38 38 H 1.08996 * 115.55138 * 329.22073 * 22 12 10 39 39 H 1.09000 * 117.49687 * 0.02562 * 23 22 12 40 40 H 1.09000 * 117.49495 * 145.02480 * 23 22 12 41 41 H 1.09004 * 117.50018 * 214.97536 * 24 22 12 42 42 H 1.08997 * 117.50126 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6163 1.9859 0.8446 5 7 1.6709 2.1075 -1.2685 6 6 2.7993 3.0176 -1.5918 7 6 4.0471 2.1923 -1.1892 8 6 3.5775 1.4552 0.0860 9 1 3.9021 1.9946 0.9759 10 6 4.1121 0.0464 0.1054 11 8 4.3218 -0.5370 -0.9370 12 7 4.3571 -0.5653 1.2810 13 6 4.9760 -1.8931 1.3009 14 6 6.4750 -1.7479 1.3518 15 1 6.9222 -0.7650 1.3681 16 6 7.2758 -2.8700 1.3786 17 7 6.7314 -4.0670 1.3592 18 14 9.1340 -2.6901 1.4424 19 1 9.5175 -1.9465 2.6692 20 1 9.7612 -4.0360 1.4624 21 1 9.6006 -1.9449 0.2456 22 6 4.0049 0.0976 2.5391 23 6 4.3833 -0.6112 3.8411 24 6 2.9188 -0.5515 3.3995 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5300 1.4309 -2.0037 31 1 2.7366 3.9325 -1.0025 32 1 2.8178 3.2483 -2.6570 33 1 4.8887 2.8486 -0.9676 34 1 4.3077 1.4802 -1.9723 35 1 4.6338 -2.4402 2.1794 36 1 4.6941 -2.4388 0.4004 37 1 7.2947 -4.8564 1.3776 38 1 4.0530 1.1864 2.5263 39 1 4.8948 -1.5704 3.7617 40 1 4.6802 0.0115 4.6851 41 1 2.2529 0.1104 3.9533 42 1 2.4662 -1.4713 3.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690879801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:36 Heat of formation + Delta-G solvation = -10.027227 kcal Electronic energy + Delta-G solvation = -21739.489778 eV Core-core repulsion = 18720.069948 eV Total energy + Delta-G solvation = -3019.419831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -40.25851 -37.88386 -36.52342 -33.26419 -33.10860 -32.00335 -30.27385 -28.08448 -27.05558 -23.56256 -22.88192 -22.28405 -21.77760 -21.25919 -20.31499 -17.86909 -16.83884 -16.41855 -15.93591 -15.44459 -15.10349 -14.78591 -14.52432 -14.19964 -13.66458 -13.54563 -13.13228 -12.76106 -12.40980 -12.15744 -11.85214 -11.68857 -11.47743 -11.35361 -11.10924 -11.00281 -10.91585 -10.80002 -10.67201 -10.49687 -10.45647 -10.37370 -10.15545 -10.06710 -9.55641 -8.93244 -8.52761 -8.45526 -7.55816 -6.06678 -4.11451 3.29067 3.30118 3.34312 3.38222 3.78991 4.26371 4.30805 4.43648 4.75516 4.82583 5.03580 5.12984 5.20948 5.27009 5.29102 5.34964 5.41623 5.45647 5.51527 5.60754 5.69099 5.80782 5.90051 5.93556 5.97922 6.10031 6.15940 6.20757 6.35183 6.36653 6.40418 6.51689 6.67742 6.80841 7.04533 7.37299 7.41666 7.51603 7.89763 8.20749 8.40035 8.87389 9.06770 9.53604 11.01107 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.006295 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.927435 B = 4446.718898 C = 4946.327654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.095 3.905 4 H 0.088 0.912 5 N -0.666 5.666 6 C 0.044 3.956 7 C -0.146 4.146 8 C -0.142 4.142 9 H 0.090 0.910 10 C 0.527 3.473 11 O -0.542 6.542 12 N -0.570 5.570 13 C 0.244 3.756 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.075 3.925 23 C -0.174 4.174 24 C -0.201 4.201 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.339 0.661 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 11.783 1.076 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C -0.015 4.015 4 H 0.106 0.894 5 N -0.294 5.294 6 C -0.086 4.086 7 C -0.185 4.185 8 C -0.165 4.165 9 H 0.108 0.892 10 C 0.314 3.686 11 O -0.420 6.420 12 N -0.299 5.299 13 C 0.125 3.875 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.031 4.031 23 C -0.211 4.211 24 C -0.240 4.240 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.286 11.739 0.790 15.629 hybrid contribution 1.984 -0.608 0.006 2.075 sum -8.302 11.132 0.795 13.910 Atomic orbital electron populations 1.21672 0.95312 1.01075 1.01842 1.22060 0.96531 0.95529 1.03996 1.22218 0.90665 0.94774 0.93890 0.89397 1.62935 1.40153 1.21021 1.05320 1.23083 0.88244 0.96507 1.00772 1.23110 0.98876 0.99216 0.97298 1.22749 0.97849 0.95463 1.00486 0.89151 1.19886 0.77600 0.87380 0.83758 1.90646 1.53280 1.66443 1.31665 1.47739 1.58767 1.20369 1.03024 1.19292 0.92389 0.77360 0.98419 1.21362 0.91153 0.92746 1.50979 0.92583 1.24918 0.98908 0.95076 0.95123 1.69918 1.35614 0.97493 1.50361 0.86579 0.85185 0.77166 0.78622 1.20217 1.21167 1.20253 1.21496 1.02606 0.95289 0.83719 1.23334 0.97097 1.04234 0.96440 1.23409 0.92442 1.03524 1.04628 0.92980 0.92371 0.93172 0.91022 0.90291 0.84463 0.90443 0.90774 0.90960 0.89433 0.94801 0.93864 0.92656 0.86811 0.86483 0.88894 0.88926 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.81 37.16 0.36 -1.33 16 2 C -0.14 -2.08 4.11 -26.73 -0.11 -2.19 16 3 C 0.10 1.27 3.39 -66.64 -0.23 1.05 16 4 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 5 N -0.67 -8.30 6.92 -103.13 -0.71 -9.02 16 6 C 0.04 0.50 7.55 -1.90 -0.01 0.49 16 7 C -0.15 -2.07 6.56 -24.87 -0.16 -2.23 16 8 C -0.14 -2.18 2.76 -90.42 -0.25 -2.43 16 9 H 0.09 1.25 6.09 -51.93 -0.32 0.94 16 10 C 0.53 10.73 4.58 -10.99 -0.05 10.68 16 11 O -0.54 -13.31 14.58 5.55 0.08 -13.22 16 12 N -0.57 -11.84 2.35 -167.47 -0.39 -12.23 16 13 C 0.24 6.27 4.59 -5.19 -0.02 6.25 16 14 C -0.52 -14.66 9.39 -34.44 -0.32 -14.99 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 18 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C 0.07 1.23 5.54 -67.93 -0.38 0.86 16 23 C -0.17 -2.80 9.71 -26.69 -0.26 -3.06 16 24 C -0.20 -2.87 9.58 -26.69 -0.26 -3.13 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.67 7.75 -51.93 -0.40 0.26 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.23 7.03 -51.93 -0.37 0.86 16 29 H 0.08 1.26 5.83 -51.93 -0.30 0.96 16 30 H 0.34 4.30 8.28 -39.29 -0.33 3.98 16 31 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.47 6.90 -51.93 -0.36 1.11 16 35 H 0.03 0.88 6.20 -51.93 -0.32 0.56 16 36 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 1.59 6.20 -51.93 -0.32 1.27 16 39 H 0.12 2.30 6.28 -51.93 -0.33 1.97 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -31.05 328.36 -8.92 -39.97 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.77 Total: 6.79 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.78 Total: -8.39 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.37 Total: -46.88 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.05 -8.92 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.945 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds