Wall clock time and date at job start Mon Mar 30 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 H 1.08998 * 109.90559 * 55.49407 * 3 2 1 5 5 N 1.47902 * 109.92076 * 294.18226 * 3 2 1 6 6 C 1.48532 * 105.81933 * 215.32184 * 5 3 2 7 7 C 1.54935 * 103.23041 * 39.20311 * 6 5 3 8 8 C 1.53995 * 109.91026 * 176.59296 * 3 2 1 9 9 H 1.09004 * 110.30659 * 239.49407 * 8 3 2 10 10 C 1.50696 * 110.31547 * 1.56391 * 8 3 2 11 11 O 1.21284 * 120.00087 * 86.25851 * 10 8 3 12 12 N 1.34774 * 120.00072 * 266.26365 * 10 8 3 13 13 C 1.46506 * 120.00033 * 184.85973 * 12 10 8 14 14 C 1.50693 * 109.47213 * 89.99470 * 13 12 10 15 15 H 1.08001 * 120.00456 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99902 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00207 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47233 * 60.00442 * 18 16 14 20 20 H 1.48503 * 109.47262 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47344 * 300.00186 * 18 16 14 22 22 C 1.46498 * 120.00115 * 4.85092 * 12 10 8 23 23 C 1.52999 * 117.49996 * 183.53964 * 22 12 10 24 24 C 1.53005 * 117.49504 * 114.88004 * 22 12 10 25 25 H 1.09003 * 109.46940 * 299.99718 * 1 2 3 26 26 H 1.08998 * 109.47209 * 59.99507 * 1 2 3 27 27 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46271 * 240.00615 * 2 1 3 29 29 H 1.08998 * 109.47209 * 120.00493 * 2 1 3 30 30 H 1.00902 * 110.99542 * 335.82943 * 5 3 2 31 31 H 1.09008 * 110.66656 * 280.76955 * 6 5 3 32 32 H 1.09000 * 110.81259 * 157.71329 * 6 5 3 33 33 H 1.09000 * 110.72530 * 204.22604 * 7 6 5 34 34 H 1.09002 * 110.72030 * 80.94380 * 7 6 5 35 35 H 1.08999 * 109.46646 * 209.99586 * 13 12 10 36 36 H 1.09001 * 109.46872 * 329.99619 * 13 12 10 37 37 H 0.96997 * 120.00098 * 179.97438 * 17 16 14 38 38 H 1.08996 * 115.55138 * 329.22073 * 22 12 10 39 39 H 1.09000 * 117.49687 * 0.02562 * 23 22 12 40 40 H 1.09000 * 117.49495 * 145.02480 * 23 22 12 41 41 H 1.09004 * 117.50018 * 214.97536 * 24 22 12 42 42 H 1.08997 * 117.50126 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6163 1.9859 0.8446 5 7 1.6709 2.1075 -1.2685 6 6 2.7993 3.0176 -1.5918 7 6 4.0471 2.1923 -1.1892 8 6 3.5775 1.4552 0.0860 9 1 3.9021 1.9946 0.9759 10 6 4.1121 0.0464 0.1054 11 8 4.3218 -0.5370 -0.9370 12 7 4.3571 -0.5653 1.2810 13 6 4.9760 -1.8931 1.3009 14 6 6.4750 -1.7479 1.3518 15 1 6.9222 -0.7650 1.3681 16 6 7.2758 -2.8700 1.3786 17 7 6.7314 -4.0670 1.3592 18 14 9.1340 -2.6901 1.4424 19 1 9.5175 -1.9465 2.6692 20 1 9.7612 -4.0360 1.4624 21 1 9.6006 -1.9449 0.2456 22 6 4.0049 0.0976 2.5391 23 6 4.3833 -0.6112 3.8411 24 6 2.9188 -0.5515 3.3995 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5300 1.4309 -2.0037 31 1 2.7366 3.9325 -1.0025 32 1 2.8178 3.2483 -2.6570 33 1 4.8887 2.8486 -0.9676 34 1 4.3077 1.4802 -1.9723 35 1 4.6338 -2.4402 2.1794 36 1 4.6941 -2.4388 0.4004 37 1 7.2947 -4.8564 1.3776 38 1 4.0530 1.1864 2.5263 39 1 4.8948 -1.5704 3.7617 40 1 4.6802 0.0115 4.6851 41 1 2.2529 0.1104 3.9533 42 1 2.4662 -1.4713 3.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690879801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:32 Heat of formation + Delta-G solvation = -30.904958 kcal Electronic energy + Delta-G solvation = -21740.395105 eV Core-core repulsion = 18720.069948 eV Total energy + Delta-G solvation = -3020.325157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -41.66118 -39.18425 -38.02163 -35.26881 -34.20308 -33.75833 -31.60463 -29.46985 -28.64307 -25.38982 -24.11773 -23.66666 -23.03391 -22.32745 -21.69252 -19.39535 -18.58438 -18.21608 -17.27745 -16.77320 -16.64218 -16.10377 -15.87549 -15.78723 -15.08965 -14.98997 -14.38129 -14.19528 -13.79216 -13.54870 -13.44870 -13.20298 -12.92241 -12.72791 -12.58018 -12.51979 -12.30456 -12.23164 -12.11933 -12.07623 -11.82465 -11.73390 -11.55029 -11.49178 -11.31765 -10.67036 -10.49892 -9.61588 -9.25921 -8.24670 -6.39889 1.32880 1.36830 1.44186 1.75798 2.20665 2.38711 3.03684 3.04770 3.21126 3.50836 3.70549 3.88798 3.95230 3.98073 4.05659 4.19621 4.23409 4.35523 4.41619 4.56312 4.59381 4.79464 4.83144 4.84988 4.93205 4.96790 5.00966 5.03014 5.12739 5.16075 5.24452 5.26364 5.29477 5.38939 5.43557 5.53472 5.78649 5.82688 6.03510 6.32847 6.66976 6.79138 7.25518 7.46736 8.81615 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.006295 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.927435 B = 4446.718898 C = 4946.327654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.104 3.896 4 H 0.116 0.884 5 N -0.662 5.662 6 C 0.053 3.947 7 C -0.148 4.148 8 C -0.135 4.135 9 H 0.116 0.884 10 C 0.519 3.481 11 O -0.598 6.598 12 N -0.576 5.576 13 C 0.265 3.735 14 C -0.537 4.537 15 H 0.051 0.949 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.057 3.943 23 C -0.183 4.183 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.335 0.665 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.024 0.976 36 H -0.010 1.010 37 H 0.267 0.733 38 H 0.151 0.849 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 15.044 2.606 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C -0.007 4.007 4 H 0.134 0.866 5 N -0.289 5.289 6 C -0.076 4.076 7 C -0.188 4.188 8 C -0.158 4.158 9 H 0.134 0.866 10 C 0.309 3.691 11 O -0.480 6.480 12 N -0.304 5.304 13 C 0.144 3.856 14 C -0.575 4.575 15 H 0.069 0.931 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.047 4.047 23 C -0.220 4.220 24 C -0.212 4.212 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.965 15.034 2.357 18.756 hybrid contribution 2.158 -1.680 -0.488 2.779 sum -8.806 13.353 1.868 16.105 Atomic orbital electron populations 1.21613 0.93039 1.01315 1.03091 1.21966 0.98441 0.96077 1.01258 1.22273 0.88985 0.94109 0.95322 0.86589 1.63019 1.40230 1.20733 1.04871 1.23162 0.85892 0.96366 1.02213 1.23137 1.00953 0.98940 0.95744 1.22834 0.99242 0.91534 1.02148 0.86619 1.20866 0.76486 0.89164 0.82581 1.90613 1.55554 1.68202 1.33634 1.47691 1.58443 1.18897 1.05381 1.18649 0.91898 0.79871 0.95208 1.21601 0.92358 0.92594 1.50976 0.93109 1.25834 1.04023 0.94662 0.94516 1.70046 1.37482 0.98285 1.51045 0.85508 0.79016 0.77549 0.79002 1.18366 1.20325 1.20421 1.21980 1.04327 0.96782 0.81651 1.23298 0.98517 1.02743 0.97486 1.23441 0.91859 1.02994 1.02864 0.91022 0.91658 0.93561 0.94871 0.92075 0.84964 0.87978 0.89383 0.89583 0.93009 0.95825 0.99157 0.92432 0.83156 0.90954 0.85539 0.84393 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.81 71.98 0.71 -2.28 16 2 C -0.14 -4.02 4.11 30.60 0.13 -3.90 16 3 C 0.10 2.53 3.39 45.06 0.15 2.68 16 4 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 5 N -0.66 -14.84 6.92 -480.20 -3.32 -18.16 16 6 C 0.05 1.05 7.55 86.65 0.65 1.71 16 7 C -0.15 -4.02 6.56 31.80 0.21 -3.81 16 8 C -0.13 -3.91 2.76 -10.66 -0.03 -3.94 16 9 H 0.12 2.77 6.09 -2.38 -0.01 2.75 16 10 C 0.52 21.82 4.58 87.66 0.40 22.22 16 11 O -0.60 -31.47 14.58 -3.04 -0.04 -31.51 16 12 N -0.58 -24.66 2.35 -802.15 -1.88 -26.55 16 13 C 0.26 14.52 4.59 85.63 0.39 14.91 16 14 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 16 C 0.01 0.50 5.46 84.66 0.46 0.96 16 17 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 18 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 C 0.06 1.77 5.54 44.99 0.25 2.02 16 23 C -0.18 -5.69 9.71 30.62 0.30 -5.40 16 24 C -0.17 -4.57 9.58 30.62 0.29 -4.28 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.37 7.75 -2.39 -0.02 1.35 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.20 7.03 -2.38 -0.02 1.18 16 29 H 0.06 1.97 5.83 -2.39 -0.01 1.95 16 30 H 0.33 8.16 8.28 -89.69 -0.74 7.42 16 31 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.79 6.90 -2.39 -0.02 1.78 16 35 H 0.02 1.33 6.20 -2.39 -0.01 1.31 16 36 H -0.01 -0.62 7.36 -2.39 -0.02 -0.64 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.15 3.59 6.20 -2.39 -0.01 3.57 16 39 H 0.07 2.95 6.28 -2.39 -0.01 2.93 16 40 H 0.13 3.04 8.14 -2.39 -0.02 3.03 16 41 H 0.14 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -73.50 328.36 1.48 -72.02 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.27 Total: 23.57 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.16 Total: -10.15 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.92 Total: -101.37 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.04 Total: -31.51 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.50 1.48 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.119 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds