Wall clock time and date at job start Mon Mar 30 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 H 1.09003 * 109.90402 * 53.47170 * 3 2 1 5 5 N 1.47901 * 109.91890 * 292.16971 * 3 2 1 6 6 C 1.48537 * 105.82012 * 215.31542 * 5 3 2 7 7 C 1.54937 * 103.22601 * 39.20325 * 6 5 3 8 8 C 1.53990 * 109.91869 * 174.57590 * 3 2 1 9 9 H 1.09000 * 110.31006 * 239.59662 * 8 3 2 10 10 C 1.50694 * 110.30740 * 1.66374 * 8 3 2 11 11 O 1.21279 * 120.00310 * 85.17069 * 10 8 3 12 12 N 1.34777 * 120.00217 * 265.16492 * 10 8 3 13 13 C 1.46497 * 120.00405 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47207 * 182.84547 * 13 12 10 15 15 C 1.50696 * 115.56273 * 320.04717 * 14 13 12 16 16 H 1.07997 * 119.99768 * 94.97749 * 15 14 13 17 17 C 1.37874 * 120.00102 * 274.97820 * 15 14 13 18 18 N 1.31519 * 120.00014 * 7.18709 * 17 15 14 19 19 Si 1.86796 * 120.00236 * 187.19047 * 17 15 14 20 20 H 1.48495 * 109.47469 * 59.99704 * 19 17 15 21 21 H 1.48507 * 109.47373 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46863 * 299.99911 * 19 17 15 23 23 C 1.53003 * 117.49658 * 174.35578 * 14 13 12 24 24 C 1.53004 * 60.03220 * 252.52626 * 23 14 13 25 25 H 1.09002 * 109.47025 * 60.00051 * 1 2 3 26 26 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47523 * 299.99604 * 1 2 3 28 28 H 1.09003 * 109.46882 * 240.00075 * 2 1 3 29 29 H 1.09002 * 109.47025 * 119.99949 * 2 1 3 30 30 H 1.00903 * 110.99835 * 335.82738 * 5 3 2 31 31 H 1.09004 * 110.66722 * 157.63940 * 6 5 3 32 32 H 1.08994 * 110.66818 * 280.76895 * 6 5 3 33 33 H 1.08998 * 110.72617 * 204.22653 * 7 6 5 34 34 H 1.09008 * 110.72272 * 80.94696 * 7 6 5 35 35 H 0.97004 * 119.99465 * 0.02562 * 12 10 8 36 36 H 1.09003 * 109.47149 * 62.84800 * 13 12 10 37 37 H 1.08995 * 109.47258 * 302.84902 * 13 12 10 38 38 H 0.97001 * 119.99815 * 174.98423 * 18 17 15 39 39 H 1.08996 * 117.49724 * 145.02077 * 23 14 13 40 40 H 1.08996 * 117.49875 * 0.02674 * 23 14 13 41 41 H 1.08998 * 117.49658 * 107.47826 * 24 23 14 42 42 H 1.09004 * 117.49639 * 252.47771 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5885 1.9957 0.8236 5 7 1.7132 2.0924 -1.2877 6 6 2.8519 2.9991 -1.5841 7 6 4.0855 2.1787 -1.1307 8 6 3.5737 1.4567 0.1369 9 1 3.8687 2.0050 1.0315 10 6 4.1073 0.0483 0.1880 11 8 4.3328 -0.5525 -0.8411 12 7 4.3342 -0.5437 1.3774 13 6 4.8523 -1.9130 1.4271 14 6 4.9515 -2.3682 2.8845 15 6 5.4416 -1.3281 3.8587 16 1 4.7327 -0.7323 4.4144 17 6 6.7949 -1.1372 4.0404 18 7 7.6566 -1.7590 3.2655 19 14 7.4045 0.0046 5.3872 20 1 6.9315 -0.4883 6.7058 21 1 8.8892 0.0374 5.3740 22 1 6.8775 1.3729 5.1522 23 6 5.3484 -3.8227 3.1448 24 6 3.9070 -3.3692 3.3847 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5967 1.4073 -2.0193 31 1 2.9043 3.2147 -2.6514 32 1 2.7698 3.9207 -1.0080 33 1 4.9194 2.8378 -0.8890 34 1 4.3718 1.4576 -1.8964 35 1 4.1535 -0.0632 2.2005 36 1 5.8408 -1.9444 0.9687 37 1 4.1789 -2.5763 0.8843 38 1 8.6047 -1.5697 3.3448 39 1 5.9641 -4.0273 4.0207 40 1 5.5393 -4.4552 2.2779 41 1 3.1497 -3.7030 2.6754 42 1 3.5742 -3.2758 4.4185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690910777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:22 Heat of formation + Delta-G solvation = -44.647074 kcal Electronic energy + Delta-G solvation = -21264.032966 eV Core-core repulsion = 18243.111906 eV Total energy + Delta-G solvation = -3020.921060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48757 -39.12066 -38.16331 -34.94424 -34.13161 -34.01953 -31.43858 -29.07439 -27.92808 -27.09196 -24.15194 -22.99238 -22.61223 -22.33349 -21.36476 -20.12966 -18.17086 -17.76706 -17.11488 -16.73021 -16.63953 -16.20758 -15.89474 -15.66298 -15.23522 -14.82759 -14.36242 -14.17304 -13.93521 -13.68427 -13.52169 -13.17852 -12.93865 -12.79278 -12.64615 -12.61728 -12.38640 -12.17538 -12.04298 -11.83559 -11.81370 -11.56056 -11.47337 -10.92856 -10.72653 -10.47119 -10.10984 -9.70518 -9.60972 -8.11653 -6.25955 1.42951 1.46030 1.51605 1.74287 2.38943 2.46240 3.16662 3.22838 3.43619 3.60975 3.75884 3.94941 4.11993 4.21862 4.24472 4.38064 4.41689 4.50015 4.55296 4.59214 4.66020 4.71368 4.81854 4.88157 4.96475 4.98109 5.01554 5.06089 5.15175 5.23800 5.24135 5.28442 5.43075 5.46585 5.59704 5.71778 5.75549 5.78649 6.35677 6.36086 6.79922 6.86966 7.42433 7.44800 8.95631 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.005889 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.509208 B = 4753.326669 C = 5360.444903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.098 3.902 4 H 0.108 0.892 5 N -0.662 5.662 6 C 0.051 3.949 7 C -0.145 4.145 8 C -0.139 4.139 9 H 0.108 0.892 10 C 0.516 3.484 11 O -0.599 6.599 12 N -0.693 5.693 13 C 0.181 3.819 14 C 0.006 3.994 15 C -0.507 4.507 16 H 0.067 0.933 17 C 0.031 3.969 18 N -0.906 5.906 19 Si 0.948 3.052 20 H -0.272 1.272 21 H -0.294 1.294 22 H -0.264 1.264 23 C -0.163 4.163 24 C -0.180 4.180 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.338 0.662 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.409 0.591 36 H 0.023 0.977 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 8.353 -4.966 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C -0.013 4.013 4 H 0.125 0.875 5 N -0.289 5.289 6 C -0.078 4.078 7 C -0.184 4.184 8 C -0.162 4.162 9 H 0.126 0.874 10 C 0.304 3.696 11 O -0.482 6.482 12 N -0.342 5.342 13 C 0.056 3.944 14 C 0.005 3.995 15 C -0.544 4.544 16 H 0.085 0.915 17 C -0.171 4.171 18 N -0.542 5.542 19 Si 0.774 3.226 20 H -0.197 1.197 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.201 4.201 24 C -0.217 4.217 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.397 8.351 -5.393 15.124 hybrid contribution 1.893 -0.509 0.805 2.119 sum -9.504 7.842 -4.588 13.148 Atomic orbital electron populations 1.21633 0.93294 1.01571 1.02831 1.21953 0.98312 0.95646 1.01645 1.22303 0.89404 0.94684 0.94863 0.87454 1.62975 1.40805 1.20975 1.04160 1.23165 0.86071 0.96411 1.02179 1.23108 1.00613 0.99117 0.95568 1.22789 0.99078 0.92047 1.02320 0.87383 1.20857 0.76635 0.89161 0.82972 1.90594 1.55434 1.67212 1.34928 1.46008 1.63829 1.15886 1.08498 1.20455 0.95192 0.82256 0.96474 1.19128 0.98933 0.89696 0.91694 1.20549 0.91364 1.19918 1.22602 0.91480 1.25686 0.97230 0.96851 0.97305 1.70113 1.02316 1.42517 1.39291 0.85772 0.76689 0.79882 0.80263 1.19733 1.22053 1.18921 1.22420 0.97133 0.99605 1.00937 1.23084 0.91319 1.05982 1.01344 0.91561 0.93021 0.91790 0.93435 0.92254 0.84610 0.89067 0.88605 0.89815 0.92097 0.75338 0.95886 0.94432 0.93238 0.91840 0.91348 0.89499 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.83 71.98 0.71 -2.14 16 2 C -0.14 -3.61 4.13 30.59 0.13 -3.48 16 3 C 0.10 2.32 3.37 45.06 0.15 2.48 16 4 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 5 N -0.66 -14.07 7.01 -480.20 -3.36 -17.43 16 6 C 0.05 0.97 7.55 86.65 0.65 1.62 16 7 C -0.14 -3.63 6.56 31.80 0.21 -3.43 16 8 C -0.14 -3.86 3.38 -10.66 -0.04 -3.90 16 9 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 10 C 0.52 19.27 4.72 87.65 0.41 19.69 16 11 O -0.60 -26.64 15.03 -3.03 -0.05 -26.68 16 12 N -0.69 -27.47 4.85 -463.07 -2.25 -29.72 16 13 C 0.18 8.26 5.75 86.38 0.50 8.76 16 14 C 0.01 0.28 1.72 -52.90 -0.09 0.19 16 15 C -0.51 -24.91 7.40 25.60 0.19 -24.72 16 16 H 0.07 3.15 7.82 -2.91 -0.02 3.12 16 17 C 0.03 1.58 5.38 84.65 0.46 2.04 16 18 N -0.91 -50.30 12.96 21.45 0.28 -50.02 16 19 Si 0.95 40.69 29.55 68.60 2.03 42.72 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.16 -7.42 9.49 30.60 0.29 -7.13 16 24 C -0.18 -7.22 9.89 30.62 0.30 -6.91 16 25 H 0.07 1.29 7.87 -2.39 -0.02 1.27 16 26 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.47 7.07 -2.39 -0.02 1.46 16 29 H 0.06 1.75 6.88 -2.39 -0.02 1.74 16 30 H 0.34 7.41 8.31 -89.69 -0.74 6.67 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.86 6.91 -2.38 -0.02 1.85 16 35 H 0.41 15.34 7.39 -92.71 -0.69 14.65 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.67 7.95 -2.39 -0.02 1.65 16 38 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 39 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.09 3.11 8.08 -2.39 -0.02 3.09 16 42 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -59.83 336.03 0.09 -59.73 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.42 Total: 38.32 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.87 Total: -16.93 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -5.33 Total: -97.17 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -59.83 0.09 -59.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690910777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.086 kcal (2) G-P(sol) polarization free energy of solvation -59.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds