Wall clock time and date at job start Mon Mar 30 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47123 * 120.00218 * 2 1 3 5 5 C 1.37102 * 120.00172 * 121.82620 * 4 2 1 6 6 H 1.07992 * 120.00441 * 154.33935 * 5 4 2 7 7 C 1.38950 * 119.99700 * 334.33887 * 5 4 2 8 8 N 1.31412 * 120.00296 * 330.66403 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 150.66584 * 7 5 4 10 10 H 1.48507 * 109.47026 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47374 * 60.00043 * 9 7 5 12 12 H 1.48498 * 109.47003 * 299.99787 * 9 7 5 13 13 C 1.34777 * 119.99748 * 301.82114 * 4 2 1 14 14 O 1.21282 * 120.00162 * 356.35519 * 13 4 2 15 15 C 1.50701 * 119.99560 * 176.35156 * 13 4 2 16 16 C 1.54998 * 113.20016 * 70.93004 * 15 13 4 17 17 C 1.54061 * 104.76426 * 146.46583 * 16 15 13 18 18 N 1.48240 * 106.69640 * 1.01556 * 17 16 15 19 19 C 1.48805 * 105.17874 * 332.51620 * 18 17 16 20 20 C 1.47677 * 108.90996 * 88.16495 * 18 17 16 21 21 C 1.52989 * 109.28819 * 312.91249 * 20 18 17 22 22 C 1.54014 * 113.03476 * 307.93399 * 15 13 4 23 23 H 1.08999 * 109.47236 * 306.97883 * 1 2 3 24 24 H 1.08999 * 109.47209 * 66.97997 * 1 2 3 25 25 H 1.09003 * 109.46885 * 186.97850 * 1 2 3 26 26 H 1.09006 * 109.47069 * 239.99873 * 2 1 3 27 27 H 1.09002 * 109.47155 * 180.90902 * 3 2 1 28 28 H 1.09001 * 109.47536 * 300.91235 * 3 2 1 29 29 H 1.09000 * 109.46989 * 60.91148 * 3 2 1 30 30 H 0.97007 * 119.99848 * 355.20015 * 8 7 5 31 31 H 1.08998 * 110.37794 * 265.28688 * 16 15 13 32 32 H 1.08998 * 110.37483 * 27.64674 * 16 15 13 33 33 H 1.08999 * 110.01352 * 241.71273 * 17 16 15 34 34 H 1.08994 * 110.05201 * 120.34638 * 17 16 15 35 35 H 1.09005 * 110.92769 * 284.55977 * 19 18 17 36 36 H 1.08997 * 110.96617 * 160.91403 * 19 18 17 37 37 H 1.09003 * 109.50132 * 72.85705 * 20 18 17 38 38 H 1.08996 * 109.50536 * 192.96645 * 20 18 17 39 39 H 1.09003 * 109.37180 * 64.98041 * 21 20 18 40 40 H 1.09006 * 109.36846 * 184.59790 * 21 20 18 41 41 H 1.08997 * 109.63021 * 291.83527 * 22 15 13 42 42 H 1.09001 * 109.62866 * 52.43061 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8372 -1.7831 1.0707 6 1 3.5179 -2.0422 1.8680 7 6 2.7912 -2.5570 -0.0824 8 7 1.6734 -2.6502 -0.7671 9 14 4.3183 -3.4650 -0.6594 10 1 4.0088 -4.2126 -1.9047 11 1 4.7563 -4.4160 0.3936 12 1 5.4040 -2.4877 -0.9264 13 6 1.6627 -0.2520 2.4199 14 8 0.9931 0.7529 2.5330 15 6 2.0971 -1.0102 3.6477 16 6 3.6149 -0.8864 3.9366 17 6 3.7254 -0.9111 5.4730 18 7 2.3473 -1.0663 5.9967 19 6 1.4661 -0.4667 4.9583 20 6 2.0304 -2.5056 6.0912 21 6 2.4386 -3.1994 4.7902 22 6 1.7494 -2.5093 3.5847 23 1 -0.3634 0.6181 0.8209 24 1 -0.3633 0.4019 -0.9458 25 1 -0.3633 -1.0201 0.1249 26 1 1.8934 -0.5139 -0.8900 27 1 3.1299 1.4425 -0.0163 28 1 1.6634 1.9611 -0.8817 29 1 1.6901 1.9515 0.8980 30 1 0.8629 -2.2364 -0.4311 31 1 4.1537 -1.7293 3.5037 32 1 4.0006 0.0542 3.5434 33 1 4.1574 0.0234 5.8311 34 1 4.3418 -1.7523 5.7899 35 1 1.5117 0.6219 4.9902 36 1 0.4392 -0.8148 5.0697 37 1 2.5781 -2.9447 6.9251 38 1 0.9598 -2.6328 6.2511 39 1 3.5214 -3.1466 4.6766 40 1 2.1314 -4.2447 4.8262 41 1 0.6679 -2.6366 3.6332 42 1 2.1299 -2.9347 2.6561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691882207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:46 Heat of formation + Delta-G solvation = -17.903231 kcal Electronic energy + Delta-G solvation = -22748.205404 eV Core-core repulsion = 19728.444045 eV Total energy + Delta-G solvation = -3019.761360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74405 -38.47309 -35.33291 -32.74339 -31.75028 -31.53374 -30.11597 -28.77938 -26.39746 -24.59761 -23.98989 -23.04213 -21.27161 -20.39183 -19.39964 -18.91439 -17.29649 -15.97366 -15.24536 -15.04860 -14.77708 -13.99178 -13.85243 -13.69444 -13.37834 -12.98400 -12.72486 -12.41932 -12.33712 -12.16282 -12.07034 -11.84655 -11.33099 -11.28778 -11.12245 -11.09173 -10.85993 -10.55712 -10.40852 -10.33918 -10.32224 -10.24965 -10.08890 -9.87970 -9.64335 -8.88813 -8.32884 -8.07396 -7.82953 -6.72019 -3.96817 3.18415 3.27162 3.44262 3.78550 4.13427 4.35998 4.56670 4.87016 5.12034 5.18989 5.38765 5.42050 5.48787 5.51109 5.77625 5.82538 5.88726 5.91966 5.94877 6.06945 6.10382 6.19853 6.24640 6.25718 6.34583 6.38618 6.43417 6.45776 6.61596 6.68499 6.70669 6.72988 6.78927 7.04023 7.09814 7.13563 7.17049 7.27495 7.56923 7.95526 8.40175 8.94066 9.49307 9.83110 10.52502 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.009518 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.404420 B = 2940.969146 C = 3819.681728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.437 5.437 5 C -0.428 4.428 6 H 0.095 0.905 7 C 0.013 3.987 8 N -0.866 5.866 9 Si 1.061 2.939 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.484 3.516 14 O -0.602 6.602 15 C -0.085 4.085 16 C -0.127 4.127 17 C 0.030 3.970 18 N -0.500 5.500 19 C 0.054 3.946 20 C 0.033 3.967 21 C -0.153 4.153 22 C -0.120 4.120 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.284 0.716 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -0.589 6.523 7.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.156 5.156 5 C -0.555 4.555 6 H 0.113 0.887 7 C -0.197 4.197 8 N -0.500 5.500 9 Si 0.887 3.113 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.273 3.727 14 O -0.489 6.489 15 C -0.089 4.089 16 C -0.166 4.166 17 C -0.099 4.099 18 N -0.221 5.221 19 C -0.074 4.074 20 C -0.095 4.095 21 C -0.192 4.192 22 C -0.157 4.157 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.007 -0.814 5.906 6.677 hybrid contribution -0.405 0.345 0.276 0.600 sum 2.601 -0.469 6.182 6.723 Atomic orbital electron populations 1.22119 0.96423 1.01782 1.01231 1.20986 0.93421 0.92264 0.90553 1.22129 1.00347 0.97404 1.02009 1.43696 1.42815 1.25957 1.03083 1.20449 1.19803 1.07054 1.08180 0.88720 1.26198 1.02290 0.96762 0.94420 1.70741 0.99970 1.36837 1.42460 0.83612 0.74488 0.76235 0.76936 1.20468 1.20911 1.21019 1.19576 0.82566 0.86361 0.84246 1.90456 1.43685 1.28034 1.86722 1.22119 0.95501 0.96698 0.94596 1.22829 0.95615 1.02530 0.95667 1.23077 0.91591 1.01583 0.93612 1.66469 1.03041 1.11695 1.40889 1.23323 0.96154 1.00340 0.87614 1.22570 1.01172 0.88952 0.96843 1.22584 1.01222 0.99626 0.95736 1.22432 0.99575 0.93385 1.00347 0.91273 0.93497 0.92967 0.88625 0.93553 0.93501 0.90877 0.90276 0.90326 0.91811 0.90802 0.91380 0.89628 0.90879 0.91228 0.91194 0.91436 0.92117 0.92956 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.59 37.16 0.32 -3.09 16 2 C 0.13 3.02 2.19 -67.93 -0.15 2.87 16 3 C -0.16 -3.36 9.16 37.16 0.34 -3.02 16 4 N -0.44 -10.36 2.41 -107.73 -0.26 -10.62 16 5 C -0.43 -10.20 6.47 -14.93 -0.10 -10.29 16 6 H 0.10 2.18 4.23 -52.49 -0.22 1.96 16 7 C 0.01 0.31 4.59 -17.47 -0.08 0.23 16 8 N -0.87 -22.49 12.23 55.50 0.68 -21.81 16 9 Si 1.06 21.72 30.01 -169.99 -5.10 16.62 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 13 C 0.48 11.21 6.15 -10.98 -0.07 11.14 16 14 O -0.60 -14.98 12.41 5.56 0.07 -14.91 16 15 C -0.08 -1.66 0.66 -152.86 -0.10 -1.76 16 16 C -0.13 -2.25 4.65 -25.12 -0.12 -2.37 16 17 C 0.03 0.45 6.20 -2.53 -0.02 0.44 16 18 N -0.50 -8.00 6.07 -228.99 -1.39 -9.39 16 19 C 0.05 0.99 5.51 -1.56 -0.01 0.98 16 20 C 0.03 0.48 5.84 -3.40 -0.02 0.46 16 21 C -0.15 -2.33 5.56 -25.64 -0.14 -2.48 16 22 C -0.12 -2.26 4.78 -25.11 -0.12 -2.38 16 23 H 0.07 1.56 6.39 -51.93 -0.33 1.23 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 1.18 6.54 -51.93 -0.34 0.84 16 26 H 0.10 2.36 5.74 -51.93 -0.30 2.06 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.62 6.16 -51.93 -0.32 1.30 16 30 H 0.28 7.44 5.18 -40.82 -0.21 7.23 16 31 H 0.08 1.39 5.40 -51.93 -0.28 1.11 16 32 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.92 6.94 -51.93 -0.36 0.56 16 35 H 0.09 1.67 7.82 -51.93 -0.41 1.26 16 36 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 39 H 0.07 1.02 5.37 -51.93 -0.28 0.74 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 42 H 0.11 2.43 4.88 -51.93 -0.25 2.17 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -26.40 299.91 -8.02 -34.42 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.28 Total: 10.44 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.26 Total: -9.26 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.97 Total: -41.82 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.07 Total: -14.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.10 Total: 16.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.40 -8.02 -34.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691882207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.513 kcal (2) G-P(sol) polarization free energy of solvation -26.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds