Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47123 * 120.00218 * 2 1 3 5 5 C 1.37102 * 120.00172 * 121.82620 * 4 2 1 6 6 H 1.07992 * 120.00441 * 154.33935 * 5 4 2 7 7 C 1.38950 * 119.99700 * 334.33887 * 5 4 2 8 8 N 1.31412 * 120.00296 * 330.66403 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 150.66584 * 7 5 4 10 10 H 1.48507 * 109.47026 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47374 * 60.00043 * 9 7 5 12 12 H 1.48498 * 109.47003 * 299.99787 * 9 7 5 13 13 C 1.34777 * 119.99748 * 301.82114 * 4 2 1 14 14 O 1.21282 * 120.00162 * 356.35519 * 13 4 2 15 15 C 1.50701 * 119.99560 * 176.35156 * 13 4 2 16 16 C 1.54998 * 113.20016 * 70.93004 * 15 13 4 17 17 C 1.54061 * 104.76426 * 146.46583 * 16 15 13 18 18 N 1.48240 * 106.69640 * 1.01556 * 17 16 15 19 19 C 1.48805 * 105.17874 * 332.51620 * 18 17 16 20 20 C 1.47677 * 108.90996 * 88.16495 * 18 17 16 21 21 C 1.52989 * 109.28819 * 312.91249 * 20 18 17 22 22 C 1.54014 * 113.03476 * 307.93399 * 15 13 4 23 23 H 1.08999 * 109.47236 * 306.97883 * 1 2 3 24 24 H 1.08999 * 109.47209 * 66.97997 * 1 2 3 25 25 H 1.09003 * 109.46885 * 186.97850 * 1 2 3 26 26 H 1.09006 * 109.47069 * 239.99873 * 2 1 3 27 27 H 1.09002 * 109.47155 * 180.90902 * 3 2 1 28 28 H 1.09001 * 109.47536 * 300.91235 * 3 2 1 29 29 H 1.09000 * 109.46989 * 60.91148 * 3 2 1 30 30 H 0.97007 * 119.99848 * 355.20015 * 8 7 5 31 31 H 1.08998 * 110.37794 * 265.28688 * 16 15 13 32 32 H 1.08998 * 110.37483 * 27.64674 * 16 15 13 33 33 H 1.08999 * 110.01352 * 241.71273 * 17 16 15 34 34 H 1.08994 * 110.05201 * 120.34638 * 17 16 15 35 35 H 1.09005 * 110.92769 * 284.55977 * 19 18 17 36 36 H 1.08997 * 110.96617 * 160.91403 * 19 18 17 37 37 H 1.09003 * 109.50132 * 72.85705 * 20 18 17 38 38 H 1.08996 * 109.50536 * 192.96645 * 20 18 17 39 39 H 1.09003 * 109.37180 * 64.98041 * 21 20 18 40 40 H 1.09006 * 109.36846 * 184.59790 * 21 20 18 41 41 H 1.08997 * 109.63021 * 291.83527 * 22 15 13 42 42 H 1.09001 * 109.62866 * 52.43061 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8372 -1.7831 1.0707 6 1 3.5179 -2.0422 1.8680 7 6 2.7912 -2.5570 -0.0824 8 7 1.6734 -2.6502 -0.7671 9 14 4.3183 -3.4650 -0.6594 10 1 4.0088 -4.2126 -1.9047 11 1 4.7563 -4.4160 0.3936 12 1 5.4040 -2.4877 -0.9264 13 6 1.6627 -0.2520 2.4199 14 8 0.9931 0.7529 2.5330 15 6 2.0971 -1.0102 3.6477 16 6 3.6149 -0.8864 3.9366 17 6 3.7254 -0.9111 5.4730 18 7 2.3473 -1.0663 5.9967 19 6 1.4661 -0.4667 4.9583 20 6 2.0304 -2.5056 6.0912 21 6 2.4386 -3.1994 4.7902 22 6 1.7494 -2.5093 3.5847 23 1 -0.3634 0.6181 0.8209 24 1 -0.3633 0.4019 -0.9458 25 1 -0.3633 -1.0201 0.1249 26 1 1.8934 -0.5139 -0.8900 27 1 3.1299 1.4425 -0.0163 28 1 1.6634 1.9611 -0.8817 29 1 1.6901 1.9515 0.8980 30 1 0.8629 -2.2364 -0.4311 31 1 4.1537 -1.7293 3.5037 32 1 4.0006 0.0542 3.5434 33 1 4.1574 0.0234 5.8311 34 1 4.3418 -1.7523 5.7899 35 1 1.5117 0.6219 4.9902 36 1 0.4392 -0.8148 5.0697 37 1 2.5781 -2.9447 6.9251 38 1 0.9598 -2.6328 6.2511 39 1 3.5214 -3.1466 4.6766 40 1 2.1314 -4.2447 4.8262 41 1 0.6679 -2.6366 3.6332 42 1 2.1299 -2.9347 2.6561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691882207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = -33.973479 kcal Electronic energy + Delta-G solvation = -22748.902263 eV Core-core repulsion = 19728.444045 eV Total energy + Delta-G solvation = -3020.458218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.23199 -40.17818 -37.19706 -34.42905 -33.48501 -32.84681 -31.78622 -30.16465 -28.15687 -26.40094 -25.43149 -24.58633 -22.81501 -21.89707 -20.97066 -20.57030 -18.97510 -17.37865 -16.98906 -16.73102 -16.29414 -15.71203 -15.56884 -15.18160 -14.89708 -14.71383 -14.31944 -13.89194 -13.74836 -13.66788 -13.53127 -13.48673 -13.07222 -12.93412 -12.73998 -12.56680 -12.37995 -12.15041 -11.98819 -11.94921 -11.87287 -11.76653 -11.55596 -11.39758 -11.26960 -10.70884 -10.07589 -9.72709 -9.45513 -8.63239 -5.87751 1.54369 1.61218 1.83450 2.01708 2.43673 2.82019 3.07618 3.10009 3.67912 3.80208 3.95068 4.03293 4.13765 4.20875 4.22752 4.28373 4.30628 4.45985 4.52297 4.58088 4.65933 4.66913 4.73197 4.83297 4.88628 4.92534 4.93705 4.94984 4.97239 5.03592 5.12334 5.23957 5.29231 5.36569 5.38894 5.50890 5.71091 5.78394 6.01355 6.06999 6.48847 7.08185 7.64658 7.98151 8.60678 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.009518 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.404420 B = 2940.969146 C = 3819.681728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.125 3.875 3 C -0.150 4.150 4 N -0.448 5.448 5 C -0.427 4.427 6 H 0.103 0.897 7 C -0.025 4.025 8 N -0.894 5.894 9 Si 1.106 2.894 10 H -0.290 1.290 11 H -0.262 1.262 12 H -0.275 1.275 13 C 0.472 3.528 14 O -0.626 6.626 15 C -0.091 4.091 16 C -0.121 4.121 17 C 0.036 3.964 18 N -0.497 5.497 19 C 0.062 3.938 20 C 0.034 3.966 21 C -0.144 4.144 22 C -0.115 4.115 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.272 0.728 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 -1.441 7.974 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 C -0.208 4.208 4 N -0.166 5.166 5 C -0.554 4.554 6 H 0.120 0.880 7 C -0.229 4.229 8 N -0.530 5.530 9 Si 0.928 3.072 10 H -0.216 1.216 11 H -0.186 1.186 12 H -0.201 1.201 13 C 0.262 3.738 14 O -0.514 6.514 15 C -0.096 4.096 16 C -0.160 4.160 17 C -0.092 4.092 18 N -0.218 5.218 19 C -0.067 4.067 20 C -0.094 4.094 21 C -0.182 4.182 22 C -0.152 4.152 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.601 -1.664 7.380 8.855 hybrid contribution -0.967 0.653 -0.174 1.179 sum 3.635 -1.011 7.206 8.134 Atomic orbital electron populations 1.21982 0.95814 1.00455 1.01974 1.21052 0.93978 0.93089 0.89799 1.22014 1.00165 0.96103 1.02468 1.43905 1.42998 1.26103 1.03565 1.20675 1.19362 1.06932 1.08391 0.87962 1.27380 1.03654 0.97264 0.94590 1.70831 1.00288 1.38533 1.43309 0.83018 0.71825 0.75747 0.76600 1.21573 1.18629 1.20116 1.20284 0.82056 0.86299 0.85208 1.90428 1.44620 1.29132 1.87251 1.22147 0.97216 0.96798 0.93430 1.22780 0.93755 1.01647 0.97842 1.23115 0.91458 1.03388 0.91267 1.66472 1.02962 1.12897 1.39444 1.23160 0.96452 0.99433 0.87702 1.22679 1.01953 0.87641 0.97141 1.22529 1.01208 1.00178 0.94306 1.22307 0.98881 0.92974 1.01070 0.92460 0.91116 0.94764 0.90367 0.93684 0.90842 0.92425 0.91557 0.90237 0.93425 0.89862 0.88640 0.91344 0.91353 0.88160 0.91008 0.90590 0.90435 0.94472 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 8.59 71.98 0.62 -5.76 16 2 C 0.12 5.82 2.19 44.99 0.10 5.92 16 3 C -0.15 -6.24 9.16 71.98 0.66 -5.58 16 4 N -0.45 -21.61 2.41 -613.13 -1.48 -23.09 16 5 C -0.43 -20.43 6.47 84.04 0.54 -19.88 16 6 H 0.10 4.66 4.23 -2.91 -0.01 4.64 16 7 C -0.02 -1.21 4.59 84.93 0.39 -0.82 16 8 N -0.89 -47.33 12.23 21.66 0.26 -47.06 16 9 Si 1.11 43.19 30.01 68.60 2.06 45.25 16 10 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 12 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 13 C 0.47 22.29 6.15 87.66 0.54 22.83 16 14 O -0.63 -31.99 12.41 -3.04 -0.04 -32.02 16 15 C -0.09 -3.56 0.66 -51.12 -0.03 -3.59 16 16 C -0.12 -4.11 4.65 31.64 0.15 -3.96 16 17 C 0.04 0.98 6.20 86.40 0.54 1.52 16 18 N -0.50 -14.58 6.07 -878.39 -5.33 -19.91 16 19 C 0.06 2.22 5.51 86.72 0.48 2.69 16 20 C 0.03 0.86 5.84 86.15 0.50 1.36 16 21 C -0.14 -3.96 5.56 31.30 0.17 -3.79 16 22 C -0.11 -4.25 4.78 31.65 0.15 -4.10 16 23 H 0.06 2.64 6.39 -2.39 -0.02 2.63 16 24 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.03 1.60 6.54 -2.39 -0.02 1.58 16 26 H 0.08 3.93 5.74 -2.38 -0.01 3.92 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 2.58 6.16 -2.39 -0.01 2.57 16 30 H 0.27 14.75 5.18 -92.70 -0.48 14.27 16 31 H 0.08 2.66 5.40 -2.39 -0.01 2.65 16 32 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.13 6.94 -2.39 -0.02 2.11 16 35 H 0.07 2.68 7.82 -2.38 -0.02 2.66 16 36 H 0.07 2.48 7.68 -2.39 -0.02 2.46 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 39 H 0.08 1.99 5.37 -2.39 -0.01 1.98 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.04 1.44 8.06 -2.39 -0.02 1.42 16 42 H 0.09 3.68 4.88 -2.39 -0.01 3.66 16 Total: -1.00 -57.59 299.91 1.59 -56.01 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 1.30 Total: 33.99 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.80 Total: -13.16 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -6.54 Total: -90.06 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.04 Total: -32.02 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.06 Total: 45.25 kcal Total: -57.59 1.59 -56.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691882207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.035 kcal (2) G-P(sol) polarization free energy of solvation -57.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds