Wall clock time and date at job start Mon Mar 30 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50695 * 120.00156 * 2 1 4 4 C 1.30998 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.50698 * 120.00069 * 5.26424 * 4 2 1 6 6 C 1.53006 * 109.47003 * 120.24841 * 5 4 2 7 7 H 1.08996 * 109.47374 * 301.91740 * 6 5 4 8 8 N 1.46896 * 109.46958 * 61.91838 * 6 5 4 9 9 C 1.50700 * 109.47120 * 181.91593 * 6 5 4 10 10 O 1.21274 * 120.00455 * 266.33197 * 9 6 5 11 11 N 1.34774 * 119.99926 * 86.33136 * 9 6 5 12 12 C 1.46503 * 120.00084 * 5.41668 * 11 9 6 13 13 C 1.50698 * 109.47455 * 89.99971 * 12 11 9 14 14 H 1.08000 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00170 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99976 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99753 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47337 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46948 * 120.00053 * 17 15 13 20 20 H 1.48500 * 109.47166 * 239.99977 * 17 15 13 21 21 C 1.46506 * 120.00211 * 185.41593 * 11 9 6 22 22 C 1.52997 * 117.49765 * 16.63788 * 21 11 9 23 23 C 1.53001 * 117.49461 * 307.97964 * 21 11 9 24 24 H 1.08999 * 109.47320 * 242.39221 * 1 2 3 25 25 H 1.09010 * 109.47064 * 2.39399 * 1 2 3 26 26 H 1.09005 * 109.47307 * 122.38812 * 1 2 3 27 27 H 1.08998 * 109.47511 * 270.00492 * 3 2 1 28 28 H 1.09000 * 109.47324 * 30.00342 * 3 2 1 29 29 H 1.09002 * 109.47409 * 150.00061 * 3 2 1 30 30 H 1.08003 * 120.00012 * 185.27076 * 4 2 1 31 31 H 1.09004 * 109.47578 * 0.25259 * 5 4 2 32 32 H 1.09001 * 109.47623 * 240.24677 * 5 4 2 33 33 H 1.00897 * 111.00443 * 60.00183 * 8 6 5 34 34 H 1.00901 * 111.00019 * 183.95458 * 8 6 5 35 35 H 1.09006 * 109.46804 * 210.00015 * 12 11 9 36 36 H 1.09004 * 109.47139 * 329.99757 * 12 11 9 37 37 H 0.96998 * 119.99634 * 180.02562 * 16 15 13 38 38 H 1.08994 * 115.54977 * 162.30765 * 21 11 9 39 39 H 1.09002 * 117.49733 * 0.02562 * 22 21 11 40 40 H 1.08997 * 117.49852 * 145.02067 * 22 21 11 41 41 H 1.09001 * 117.49362 * 214.97865 * 23 21 11 42 42 H 1.08994 * 117.49908 * 359.97207 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4132 -2.4368 -0.1208 6 6 1.8868 -3.1839 -1.3693 7 1 1.7288 -2.5592 -2.2484 8 7 3.3166 -3.4954 -1.2405 9 6 1.1051 -4.4639 -1.5155 10 8 1.5426 -5.4976 -1.0563 11 7 -0.0804 -4.4600 -2.1566 12 6 -0.5537 -3.2393 -2.8139 13 6 -0.0678 -3.2160 -4.2403 14 1 0.5330 -4.0295 -4.6193 15 6 -0.3904 -2.1563 -5.0613 16 7 -1.1216 -1.1656 -4.5995 17 14 0.2125 -2.1273 -6.8290 18 1 1.0108 -3.3499 -7.1000 19 1 -0.9527 -2.0837 -7.7488 20 1 1.0581 -0.9257 -7.0440 21 6 -0.8959 -5.6765 -2.1961 22 6 -0.5635 -6.7827 -1.1928 23 6 -0.2211 -6.9640 -2.6737 24 1 -0.3634 -0.4762 0.9106 25 1 -0.3634 1.0269 -0.0429 26 1 -0.3634 -0.5505 -0.8678 27 1 2.4421 1.6198 -1.0276 28 1 1.6715 2.0647 0.5139 29 1 3.2129 1.1747 0.5138 30 1 3.2385 -1.1365 0.0854 31 1 0.3449 -2.2357 -0.2013 32 1 1.6025 -3.0477 0.7618 33 1 3.4893 -4.0741 -0.4322 34 1 3.6686 -3.9317 -2.0794 35 1 -1.6435 -3.2187 -2.8009 36 1 -0.1675 -2.3683 -2.2843 37 1 -1.3488 -0.4203 -5.1773 38 1 -1.9443 -5.5314 -2.4562 39 1 0.2616 -6.6052 -0.5030 40 1 -1.3933 -7.3656 -0.7931 41 1 -0.8259 -7.6660 -3.2477 42 1 0.8293 -6.9058 -2.9589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720290538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:31 Heat of formation + Delta-G solvation = 1.270781 kcal Electronic energy + Delta-G solvation = -21333.774891 eV Core-core repulsion = 18314.844979 eV Total energy + Delta-G solvation = -3018.929912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88751 -37.02230 -35.89085 -34.43177 -33.45914 -32.15158 -29.50567 -27.40446 -27.11868 -25.86479 -23.32214 -22.70443 -21.85778 -21.05993 -18.36487 -17.43899 -16.73622 -16.30048 -16.01412 -15.24231 -14.69870 -14.48765 -14.30912 -14.16270 -13.64348 -13.43400 -13.22079 -12.89612 -12.49218 -12.32032 -12.09092 -11.72181 -11.57230 -11.39235 -11.25378 -11.05942 -10.93347 -10.87312 -10.65858 -10.51352 -10.43658 -10.27516 -9.74727 -9.60768 -9.28672 -8.61662 -8.36133 -8.06840 -7.56731 -6.21854 -4.29309 2.56113 3.18987 3.20249 3.29045 3.33828 3.80329 4.30565 4.52047 4.90848 5.09988 5.14923 5.27840 5.32080 5.46504 5.54829 5.61560 5.65139 5.74339 5.77719 5.83693 5.94308 6.10191 6.13872 6.15476 6.17278 6.20719 6.38479 6.41584 6.49022 6.53631 6.74266 6.86196 7.10252 7.10863 7.31163 7.42149 7.55808 7.72933 7.78923 8.00024 8.25518 8.73892 8.91380 9.38833 10.84443 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.009167 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.967053 B = 3053.600346 C = 4720.430697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.142 4.142 3 C -0.111 4.111 4 C -0.140 4.140 5 C -0.075 4.075 6 C 0.079 3.921 7 H 0.121 0.879 8 N -0.818 5.818 9 C 0.486 3.514 10 O -0.573 6.573 11 N -0.563 5.563 12 C 0.236 3.764 13 C -0.539 4.539 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.085 3.915 22 C -0.202 4.202 23 C -0.187 4.187 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.340 0.660 34 H 0.341 0.659 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -0.242 7.738 8.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C -0.167 4.167 4 C -0.158 4.158 5 C -0.113 4.113 6 C -0.036 4.036 7 H 0.139 0.861 8 N -0.346 5.346 9 C 0.273 3.727 10 O -0.455 6.455 11 N -0.290 5.290 12 C 0.117 3.883 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.020 4.020 22 C -0.240 4.240 23 C -0.226 4.226 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.801 0.257 7.981 8.462 hybrid contribution -0.181 -0.941 -1.457 1.744 sum 2.619 -0.685 6.524 7.063 Atomic orbital electron populations 1.20864 0.92482 1.02081 1.02219 1.21568 0.95803 0.94909 1.01918 1.20778 0.99119 0.95007 1.01840 1.22390 0.99477 0.92678 1.01267 1.20591 1.00045 0.94706 0.95991 1.21592 0.87273 0.93429 1.01303 0.86119 1.59170 1.13220 1.53271 1.08957 1.21916 0.81629 0.91768 0.77395 1.90426 1.69282 1.33770 1.52050 1.47794 1.18095 1.12335 1.50789 1.19553 0.96054 0.80278 0.92433 1.21487 1.33948 1.06274 0.96006 0.92138 1.24910 0.94741 0.95176 0.98768 1.69915 1.36872 1.09313 1.36466 0.86475 0.78697 0.78190 0.84356 1.19713 1.20850 1.20726 1.21548 0.94943 0.81406 1.04133 1.23781 1.04470 1.01250 0.94457 1.23088 1.01816 1.00571 0.97096 0.92273 0.92631 0.90359 0.91591 0.92558 0.92429 0.86955 0.90237 0.91681 0.84697 0.84705 0.94637 0.93692 0.92529 0.86055 0.84950 0.90238 0.89526 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.58 36.00 0.31 -1.46 16 2 C -0.14 -2.11 6.05 -101.07 -0.61 -2.72 16 3 C -0.11 -1.40 9.96 36.00 0.36 -1.04 16 4 C -0.14 -2.15 8.77 -36.03 -0.32 -2.47 16 5 C -0.08 -1.23 4.94 -27.88 -0.14 -1.37 16 6 C 0.08 1.43 2.34 -68.86 -0.16 1.27 16 7 H 0.12 2.54 6.38 -51.93 -0.33 2.21 16 8 N -0.82 -13.15 8.66 -5.65 -0.05 -13.20 16 9 C 0.49 9.73 6.66 -10.99 -0.07 9.65 16 10 O -0.57 -11.89 12.05 5.56 0.07 -11.82 16 11 N -0.56 -11.71 2.82 -167.47 -0.47 -12.18 16 12 C 0.24 5.47 4.83 -5.19 -0.03 5.44 16 13 C -0.54 -13.86 9.12 -34.44 -0.31 -14.17 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 17 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.09 1.63 6.62 -67.93 -0.45 1.18 16 22 C -0.20 -3.50 9.63 -26.70 -0.26 -3.76 16 23 C -0.19 -3.37 9.88 -26.69 -0.26 -3.63 16 24 H 0.06 0.79 8.06 -51.93 -0.42 0.38 16 25 H 0.05 0.75 7.96 -51.92 -0.41 0.34 16 26 H 0.08 1.35 7.05 -51.93 -0.37 0.98 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 30 H 0.11 1.68 7.99 -52.48 -0.42 1.27 16 31 H 0.08 1.34 5.06 -51.93 -0.26 1.08 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.34 5.23 8.55 -39.29 -0.34 4.89 16 34 H 0.34 5.46 9.06 -39.29 -0.36 5.10 16 35 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.05 1.05 5.17 -51.93 -0.27 0.79 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.12 2.17 8.09 -51.93 -0.42 1.75 16 39 H 0.13 2.56 5.22 -52.12 -0.27 2.29 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.83 7.59 -51.93 -0.39 1.44 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -26.81 339.51 -8.41 -35.22 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.75 Total: 15.84 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.04 Total: -11.41 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.21 Total: -48.46 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.81 -8.41 -35.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720290538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.490 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds