Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50695 * 120.00156 * 2 1 4 4 C 1.30998 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.50698 * 120.00069 * 5.26424 * 4 2 1 6 6 C 1.53006 * 109.47003 * 120.24841 * 5 4 2 7 7 H 1.08996 * 109.47374 * 301.91740 * 6 5 4 8 8 N 1.46896 * 109.46958 * 61.91838 * 6 5 4 9 9 C 1.50700 * 109.47120 * 181.91593 * 6 5 4 10 10 O 1.21274 * 120.00455 * 266.33197 * 9 6 5 11 11 N 1.34774 * 119.99926 * 86.33136 * 9 6 5 12 12 C 1.46503 * 120.00084 * 5.41668 * 11 9 6 13 13 C 1.50698 * 109.47455 * 89.99971 * 12 11 9 14 14 H 1.08000 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00170 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99976 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99753 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47337 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46948 * 120.00053 * 17 15 13 20 20 H 1.48500 * 109.47166 * 239.99977 * 17 15 13 21 21 C 1.46506 * 120.00211 * 185.41593 * 11 9 6 22 22 C 1.52997 * 117.49765 * 16.63788 * 21 11 9 23 23 C 1.53001 * 117.49461 * 307.97964 * 21 11 9 24 24 H 1.08999 * 109.47320 * 242.39221 * 1 2 3 25 25 H 1.09010 * 109.47064 * 2.39399 * 1 2 3 26 26 H 1.09005 * 109.47307 * 122.38812 * 1 2 3 27 27 H 1.08998 * 109.47511 * 270.00492 * 3 2 1 28 28 H 1.09000 * 109.47324 * 30.00342 * 3 2 1 29 29 H 1.09002 * 109.47409 * 150.00061 * 3 2 1 30 30 H 1.08003 * 120.00012 * 185.27076 * 4 2 1 31 31 H 1.09004 * 109.47578 * 0.25259 * 5 4 2 32 32 H 1.09001 * 109.47623 * 240.24677 * 5 4 2 33 33 H 1.00897 * 111.00443 * 60.00183 * 8 6 5 34 34 H 1.00901 * 111.00019 * 183.95458 * 8 6 5 35 35 H 1.09006 * 109.46804 * 210.00015 * 12 11 9 36 36 H 1.09004 * 109.47139 * 329.99757 * 12 11 9 37 37 H 0.96998 * 119.99634 * 180.02562 * 16 15 13 38 38 H 1.08994 * 115.54977 * 162.30765 * 21 11 9 39 39 H 1.09002 * 117.49733 * 0.02562 * 22 21 11 40 40 H 1.08997 * 117.49852 * 145.02067 * 22 21 11 41 41 H 1.09001 * 117.49362 * 214.97865 * 23 21 11 42 42 H 1.08994 * 117.49908 * 359.97207 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4132 -2.4368 -0.1208 6 6 1.8868 -3.1839 -1.3693 7 1 1.7288 -2.5592 -2.2484 8 7 3.3166 -3.4954 -1.2405 9 6 1.1051 -4.4639 -1.5155 10 8 1.5426 -5.4976 -1.0563 11 7 -0.0804 -4.4600 -2.1566 12 6 -0.5537 -3.2393 -2.8139 13 6 -0.0678 -3.2160 -4.2403 14 1 0.5330 -4.0295 -4.6193 15 6 -0.3904 -2.1563 -5.0613 16 7 -1.1216 -1.1656 -4.5995 17 14 0.2125 -2.1273 -6.8290 18 1 1.0108 -3.3499 -7.1000 19 1 -0.9527 -2.0837 -7.7488 20 1 1.0581 -0.9257 -7.0440 21 6 -0.8959 -5.6765 -2.1961 22 6 -0.5635 -6.7827 -1.1928 23 6 -0.2211 -6.9640 -2.6737 24 1 -0.3634 -0.4762 0.9106 25 1 -0.3634 1.0269 -0.0429 26 1 -0.3634 -0.5505 -0.8678 27 1 2.4421 1.6198 -1.0276 28 1 1.6715 2.0647 0.5139 29 1 3.2129 1.1747 0.5138 30 1 3.2385 -1.1365 0.0854 31 1 0.3449 -2.2357 -0.2013 32 1 1.6025 -3.0477 0.7618 33 1 3.4893 -4.0741 -0.4322 34 1 3.6686 -3.9317 -2.0794 35 1 -1.6435 -3.2187 -2.8009 36 1 -0.1675 -2.3683 -2.2843 37 1 -1.3488 -0.4203 -5.1773 38 1 -1.9443 -5.5314 -2.4562 39 1 0.2616 -6.6052 -0.5030 40 1 -1.3933 -7.3656 -0.7931 41 1 -0.8259 -7.6660 -3.2477 42 1 0.8293 -6.9058 -2.9589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720290538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -13.776923 kcal Electronic energy + Delta-G solvation = -21334.427408 eV Core-core repulsion = 18314.844979 eV Total energy + Delta-G solvation = -3019.582430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46667 -38.34397 -37.36414 -36.08039 -34.98648 -33.98653 -30.75486 -29.05629 -28.53022 -27.21774 -24.99272 -24.33528 -23.28062 -22.50877 -19.93150 -18.83327 -18.51271 -17.90480 -17.59742 -16.74161 -16.34896 -16.09479 -15.80383 -15.46605 -14.87586 -14.75990 -14.60689 -14.35005 -14.26285 -13.98007 -13.52926 -13.19969 -12.99784 -12.77004 -12.67253 -12.60584 -12.51709 -12.36367 -12.20273 -12.13154 -12.01644 -11.65557 -11.45568 -11.23850 -10.79174 -10.60855 -9.71291 -9.39827 -9.22807 -8.21408 -6.36074 1.31191 1.37283 1.41008 1.50264 1.64392 2.20856 2.40955 3.05011 3.08877 3.50406 3.67283 3.98543 4.06577 4.12871 4.17421 4.22633 4.24412 4.29525 4.60277 4.68295 4.72540 4.76588 4.79666 4.90649 4.91804 4.99052 5.01593 5.06259 5.10842 5.15139 5.25928 5.33837 5.38123 5.66010 5.89142 5.91956 6.00429 6.03252 6.15917 6.47044 6.52179 6.78214 7.24288 7.37231 8.83146 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.009167 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.967053 B = 3053.600346 C = 4720.430697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.144 4.144 3 C -0.110 4.110 4 C -0.150 4.150 5 C -0.068 4.068 6 C 0.088 3.912 7 H 0.091 0.909 8 N -0.807 5.807 9 C 0.481 3.519 10 O -0.580 6.580 11 N -0.568 5.568 12 C 0.254 3.746 13 C -0.548 4.548 14 H 0.045 0.955 15 C 0.028 3.972 16 N -0.911 5.911 17 Si 0.951 3.049 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.057 3.943 22 C -0.181 4.181 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.347 0.653 34 H 0.342 0.658 35 H 0.020 0.980 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -0.280 8.061 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C -0.166 4.166 4 C -0.168 4.168 5 C -0.106 4.106 6 C -0.027 4.027 7 H 0.109 0.891 8 N -0.336 5.336 9 C 0.269 3.731 10 O -0.463 6.463 11 N -0.296 5.296 12 C 0.133 3.867 13 C -0.586 4.586 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.549 5.549 17 Si 0.777 3.223 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.048 4.048 22 C -0.219 4.219 23 C -0.223 4.223 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.061 0.205 8.317 8.864 hybrid contribution -0.266 -0.959 -1.533 1.828 sum 2.795 -0.754 6.783 7.375 Atomic orbital electron populations 1.20842 0.92719 1.02497 1.01414 1.21864 0.95933 0.95910 1.00731 1.20806 0.99794 0.94057 1.01979 1.22374 0.99693 0.92296 1.02450 1.20507 0.99544 0.95293 0.95234 1.21430 0.88080 0.92253 1.00944 0.89110 1.59137 1.11713 1.53412 1.09299 1.22267 0.81476 0.92333 0.76990 1.90428 1.69390 1.34147 1.52319 1.47749 1.18693 1.12327 1.50822 1.19171 0.94787 0.81237 0.91492 1.21609 1.33814 1.05877 0.97306 0.93641 1.25546 0.94868 0.94893 1.02037 1.69989 1.37560 1.09728 1.37654 0.85613 0.78305 0.78002 0.80404 1.19983 1.20225 1.20203 1.21857 0.95376 0.81254 1.06264 1.23724 1.04632 0.99953 0.93565 1.23094 1.00688 1.00324 0.98161 0.91072 0.91381 0.93364 0.92018 0.90956 0.91035 0.86342 0.91235 0.90930 0.83899 0.84626 0.96175 0.94258 0.92263 0.85167 0.86775 0.87016 0.86920 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 8.58 71.23 0.61 -2.84 16 2 C -0.14 -4.16 6.05 -16.49 -0.10 -4.26 16 3 C -0.11 -2.58 9.96 71.23 0.71 -1.87 16 4 C -0.15 -4.52 8.77 25.65 0.22 -4.29 16 5 C -0.07 -2.21 4.94 29.85 0.15 -2.07 16 6 C 0.09 3.24 2.34 44.17 0.10 3.34 16 7 H 0.09 3.93 6.38 -2.39 -0.02 3.92 16 8 N -0.81 -25.66 8.66 -171.80 -1.49 -27.15 16 9 C 0.48 19.46 6.66 87.66 0.58 20.04 16 10 O -0.58 -23.98 12.05 -3.01 -0.04 -24.01 16 11 N -0.57 -23.98 2.82 -802.13 -2.26 -26.25 16 12 C 0.25 12.05 4.83 85.63 0.41 12.46 16 13 C -0.55 -28.64 9.12 25.60 0.23 -28.41 16 14 H 0.05 2.47 7.81 -2.91 -0.02 2.45 16 15 C 0.03 1.45 5.46 84.66 0.46 1.92 16 16 N -0.91 -49.20 13.29 21.45 0.28 -48.92 16 17 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.06 2.16 6.62 44.99 0.30 2.46 16 22 C -0.18 -5.99 9.63 30.62 0.29 -5.70 16 23 C -0.18 -6.43 9.88 30.62 0.30 -6.13 16 24 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 25 H 0.07 1.77 7.96 -2.38 -0.02 1.75 16 26 H 0.05 1.71 7.05 -2.38 -0.02 1.69 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 29 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 30 H 0.12 3.41 7.99 -2.91 -0.02 3.39 16 31 H 0.07 2.40 5.06 -2.39 -0.01 2.39 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.35 10.37 8.55 -89.70 -0.77 9.61 16 34 H 0.34 10.87 9.06 -89.69 -0.81 10.06 16 35 H 0.02 1.01 8.03 -2.38 -0.02 0.99 16 36 H 0.04 1.92 5.17 -2.38 -0.01 1.90 16 37 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 38 H 0.13 4.58 8.09 -2.39 -0.02 4.56 16 39 H 0.11 4.29 5.22 -5.44 -0.03 4.26 16 40 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.07 2.67 7.59 -2.39 -0.02 2.66 16 Total: -1.00 -56.49 339.51 2.24 -54.26 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: -0.57 Total: 43.32 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.28 Total: -15.34 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.47 Total: -102.31 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -56.49 2.24 -54.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720290538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.480 kcal (2) G-P(sol) polarization free energy of solvation -56.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds