Wall clock time and date at job start Mon Mar 30 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00303 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46499 * 119.99936 * 60.00125 * 12 2 1 14 14 C 1.34773 * 119.99969 * 239.72090 * 12 2 1 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 12 2 17 17 H 1.09006 * 109.95824 * 319.79642 * 16 14 12 18 18 N 1.47098 * 109.97540 * 198.54916 * 16 14 12 19 19 C 1.46961 * 109.25801 * 222.99145 * 18 16 14 20 20 C 1.53797 * 108.16688 * 1.57652 * 19 18 16 21 21 H 1.09005 * 112.05734 * 252.05364 * 20 19 18 22 22 C 1.54003 * 108.66393 * 127.72588 * 20 19 18 23 23 C 1.54205 * 106.79756 * 248.96573 * 22 20 19 24 24 C 1.54909 * 104.23105 * 23.17483 * 23 22 20 25 25 C 1.53628 * 109.97223 * 81.07311 * 16 14 12 26 26 H 1.08999 * 112.57785 * 268.06585 * 25 16 14 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 30 30 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 34 34 H 1.00906 * 111.00239 * 100.25964 * 18 16 14 35 35 H 1.09003 * 109.73078 * 121.26284 * 19 18 16 36 36 H 1.08996 * 109.73416 * 241.90831 * 19 18 16 37 37 H 1.09007 * 109.99183 * 8.29583 * 22 20 19 38 38 H 1.08994 * 110.00070 * 129.58149 * 22 20 19 39 39 H 1.08994 * 110.48482 * 141.86702 * 23 22 20 40 40 H 1.09004 * 110.47665 * 264.35903 * 23 22 20 41 41 H 1.08998 * 110.76696 * 80.09554 * 24 23 22 42 42 H 1.09003 * 110.76626 * 203.30377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8259 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7977 -0.0372 2.0805 15 8 3.0946 1.1226 1.8863 16 6 3.3005 -0.7477 3.3108 17 1 2.5143 -1.3808 3.7223 18 7 3.7329 0.2344 4.3169 19 6 5.0005 -0.2092 4.9138 20 6 5.4197 -1.5210 4.2293 21 1 5.2996 -2.3823 4.8866 22 6 6.8686 -1.3744 3.7284 23 6 6.8068 -1.3460 2.1879 24 6 5.3632 -0.8805 1.8732 25 6 4.5305 -1.5986 2.9595 26 1 4.2684 -2.6217 2.6900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.7095 1.1617 -3.4844 31 1 2.4156 -2.7377 0.9718 32 1 1.6236 -2.2851 2.5003 33 1 0.6903 -2.3002 0.9847 34 1 3.0252 0.3626 5.0247 35 1 5.7670 0.5496 4.7561 36 1 4.8648 -0.3787 5.9820 37 1 7.2996 -0.4452 4.1013 38 1 7.4662 -2.2225 4.0625 39 1 7.5318 -0.6360 1.7900 40 1 6.9860 -2.3412 1.7806 41 1 5.2760 0.2016 1.9716 42 1 5.0622 -1.2017 0.8760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229094610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:12 Heat of formation + Delta-G solvation = -32.616211 kcal Electronic energy + Delta-G solvation = -21819.673891 eV Core-core repulsion = 18799.274528 eV Total energy + Delta-G solvation = -3020.399363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41052 -38.07975 -35.18098 -34.28727 -32.81600 -30.81189 -29.10662 -28.19871 -26.15405 -25.93298 -25.13602 -22.66780 -20.77662 -20.28647 -19.40899 -17.99369 -17.11795 -16.46892 -15.86883 -15.36457 -15.04129 -14.49294 -14.20449 -13.78013 -13.68741 -13.12925 -12.96303 -12.62654 -12.40264 -12.27330 -11.86316 -11.50333 -11.48102 -11.16936 -11.02248 -10.91410 -10.82888 -10.77678 -10.63218 -10.55592 -10.48300 -10.27543 -10.17739 -10.10576 -9.11376 -8.88131 -8.38714 -8.03965 -7.44871 -6.01925 -4.09592 3.30160 3.35366 3.36706 3.53641 3.85435 4.39698 4.41623 4.50494 4.63727 4.80917 5.15772 5.24044 5.29145 5.33570 5.39156 5.41327 5.55730 5.63992 5.67968 5.78833 5.83668 5.93468 5.98541 6.09719 6.11431 6.17923 6.33830 6.36341 6.51371 6.74555 6.81105 6.87361 6.98759 7.13420 7.45127 7.56036 7.63008 7.78533 8.09449 8.27212 8.66510 8.91164 9.26414 9.57326 11.03225 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.006169 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.248083 B = 4537.664263 C = 5141.511641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.597 5.597 13 C 0.088 3.912 14 C 0.516 3.484 15 O -0.529 6.529 16 C 0.066 3.934 17 H 0.065 0.935 18 N -0.661 5.661 19 C 0.061 3.939 20 C -0.112 4.112 21 H 0.081 0.919 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.082 4.082 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.340 0.660 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -7.736 13.457 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.330 5.330 13 C -0.057 4.057 14 C 0.301 3.699 15 O -0.405 6.405 16 C -0.048 4.048 17 H 0.083 0.917 18 N -0.290 5.290 19 C -0.068 4.068 20 C -0.131 4.131 21 H 0.099 0.901 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.102 4.102 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.810 -6.517 12.738 15.846 hybrid contribution -0.120 -1.420 -0.298 1.456 sum 6.690 -7.938 12.439 16.202 Atomic orbital electron populations 1.22092 0.98487 0.99195 1.00746 1.18869 0.90635 0.94504 0.80009 0.91971 1.21288 1.31627 1.12833 0.90347 0.92444 1.24888 0.95037 0.94994 0.98887 1.69872 1.36465 1.22614 1.23737 0.86591 0.79231 0.79563 0.82189 1.20322 1.21211 1.20292 1.48210 1.49359 1.11448 1.23984 1.21548 1.01444 0.83760 0.98916 1.20044 0.78853 0.87113 0.83911 1.90628 1.57034 1.16881 1.75997 1.21992 0.97322 0.92082 0.93369 0.91732 1.60666 1.05236 1.47142 1.15992 1.22633 0.92837 0.95184 0.96189 1.22812 0.95965 0.97787 0.96566 0.90091 1.22245 0.95145 1.01480 0.96254 1.22351 0.97706 1.00941 0.95041 1.22595 0.93215 1.02037 0.98050 1.22601 0.93219 0.98523 0.95844 0.89066 0.95235 0.97073 0.88897 0.92711 0.93546 0.93339 0.91056 0.84312 0.90581 0.93566 0.91470 0.92271 0.91763 0.92010 0.89236 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.72 2.63 -69.08 -0.18 6.54 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.19 8.37 -34.44 -0.29 -14.48 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.60 -12.82 2.75 -175.26 -0.48 -13.30 16 13 C 0.09 1.48 9.32 59.85 0.56 2.04 16 14 C 0.52 10.85 5.46 -10.98 -0.06 10.79 16 15 O -0.53 -13.49 14.97 5.56 0.08 -13.41 16 16 C 0.07 1.03 2.71 -68.43 -0.19 0.84 16 17 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 18 N -0.66 -9.82 6.54 -106.96 -0.70 -10.52 16 19 C 0.06 0.73 7.08 -3.38 -0.02 0.70 16 20 C -0.11 -1.27 3.93 -88.51 -0.35 -1.62 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 22 C -0.11 -1.23 6.38 -25.58 -0.16 -1.40 16 23 C -0.12 -1.57 6.82 -25.09 -0.17 -1.74 16 24 C -0.12 -1.99 5.07 -24.89 -0.13 -2.12 16 25 C -0.08 -1.15 3.48 -88.29 -0.31 -1.46 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.65 5.97 -51.93 -0.31 0.34 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 34 H 0.34 4.34 8.90 -39.29 -0.35 3.99 16 35 H 0.08 0.97 7.01 -51.93 -0.36 0.61 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.71 7.03 -51.92 -0.36 0.35 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.76 6.69 -51.93 -0.35 1.42 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -31.38 319.19 -8.50 -39.88 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.76 Total: 4.58 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.06 Total: -3.45 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.55 Total: -48.62 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.38 -8.50 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229094610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.264 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds