Wall clock time and date at job start Mon Mar 30 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00303 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46499 * 119.99936 * 60.00125 * 12 2 1 14 14 C 1.34773 * 119.99969 * 239.72090 * 12 2 1 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 12 2 17 17 H 1.09006 * 109.95824 * 319.79642 * 16 14 12 18 18 N 1.47098 * 109.97540 * 198.54916 * 16 14 12 19 19 C 1.46961 * 109.25801 * 222.99145 * 18 16 14 20 20 C 1.53797 * 108.16688 * 1.57652 * 19 18 16 21 21 H 1.09005 * 112.05734 * 252.05364 * 20 19 18 22 22 C 1.54003 * 108.66393 * 127.72588 * 20 19 18 23 23 C 1.54205 * 106.79756 * 248.96573 * 22 20 19 24 24 C 1.54909 * 104.23105 * 23.17483 * 23 22 20 25 25 C 1.53628 * 109.97223 * 81.07311 * 16 14 12 26 26 H 1.08999 * 112.57785 * 268.06585 * 25 16 14 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 30 30 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 34 34 H 1.00906 * 111.00239 * 100.25964 * 18 16 14 35 35 H 1.09003 * 109.73078 * 121.26284 * 19 18 16 36 36 H 1.08996 * 109.73416 * 241.90831 * 19 18 16 37 37 H 1.09007 * 109.99183 * 8.29583 * 22 20 19 38 38 H 1.08994 * 110.00070 * 129.58149 * 22 20 19 39 39 H 1.08994 * 110.48482 * 141.86702 * 23 22 20 40 40 H 1.09004 * 110.47665 * 264.35903 * 23 22 20 41 41 H 1.08998 * 110.76696 * 80.09554 * 24 23 22 42 42 H 1.09003 * 110.76626 * 203.30377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8259 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7977 -0.0372 2.0805 15 8 3.0946 1.1226 1.8863 16 6 3.3005 -0.7477 3.3108 17 1 2.5143 -1.3808 3.7223 18 7 3.7329 0.2344 4.3169 19 6 5.0005 -0.2092 4.9138 20 6 5.4197 -1.5210 4.2293 21 1 5.2996 -2.3823 4.8866 22 6 6.8686 -1.3744 3.7284 23 6 6.8068 -1.3460 2.1879 24 6 5.3632 -0.8805 1.8732 25 6 4.5305 -1.5986 2.9595 26 1 4.2684 -2.6217 2.6900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.7095 1.1617 -3.4844 31 1 2.4156 -2.7377 0.9718 32 1 1.6236 -2.2851 2.5003 33 1 0.6903 -2.3002 0.9847 34 1 3.0252 0.3626 5.0247 35 1 5.7670 0.5496 4.7561 36 1 4.8648 -0.3787 5.9820 37 1 7.2996 -0.4452 4.1013 38 1 7.4662 -2.2225 4.0625 39 1 7.5318 -0.6360 1.7900 40 1 6.9860 -2.3412 1.7806 41 1 5.2760 0.2016 1.9716 42 1 5.0622 -1.2017 0.8760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229094610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:12 Heat of formation + Delta-G solvation = -54.530188 kcal Electronic energy + Delta-G solvation = -21820.624152 eV Core-core repulsion = 18799.274528 eV Total energy + Delta-G solvation = -3021.349624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67272 -39.57687 -36.99886 -35.43259 -34.76635 -32.23261 -30.76696 -29.26335 -27.57659 -27.36092 -27.08297 -24.10780 -22.10915 -21.69190 -20.41688 -19.56750 -18.47363 -18.30290 -17.44526 -17.00980 -16.46993 -16.00351 -15.66288 -15.15258 -14.74509 -14.72544 -14.38203 -14.13877 -13.83796 -13.55211 -13.35524 -13.16483 -12.97822 -12.90058 -12.70138 -12.58552 -12.29174 -12.16079 -12.12240 -11.95703 -11.73223 -11.67790 -11.62232 -11.25905 -11.16241 -10.58420 -10.38716 -9.23677 -9.21301 -8.12872 -6.29518 1.39718 1.42449 1.49726 1.95587 2.30479 2.48693 3.14196 3.34916 3.36291 3.53819 3.78949 3.97281 4.07446 4.34853 4.39081 4.43772 4.49875 4.53223 4.57712 4.66502 4.70710 4.79083 4.81034 4.89248 4.98833 5.01818 5.05457 5.09310 5.12751 5.20082 5.28836 5.44539 5.48221 5.50477 5.63970 5.71881 5.94054 6.11288 6.19142 6.51117 6.79163 6.97317 7.37136 7.65251 8.91025 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.006169 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.248083 B = 4537.664263 C = 5141.511641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.264 3.736 3 H 0.002 0.998 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.505 3.495 15 O -0.589 6.589 16 C 0.078 3.922 17 H 0.097 0.903 18 N -0.689 5.689 19 C 0.060 3.940 20 C -0.099 4.099 21 H 0.117 0.883 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.081 4.081 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.017 0.983 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.352 0.648 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -11.101 15.430 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.020 0.980 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.336 5.336 13 C -0.059 4.059 14 C 0.293 3.707 15 O -0.469 6.469 16 C -0.036 4.036 17 H 0.115 0.885 18 N -0.321 5.321 19 C -0.069 4.069 20 C -0.118 4.118 21 H 0.135 0.865 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.100 4.100 26 H 0.132 0.868 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.613 -9.926 14.747 19.338 hybrid contribution -0.361 -0.273 -0.921 1.026 sum 7.252 -10.200 13.826 18.649 Atomic orbital electron populations 1.21868 0.97339 1.00052 0.99756 1.18434 0.91425 0.91968 0.81994 0.97991 1.21537 1.31632 1.12875 0.91171 0.92276 1.25747 0.95168 0.95676 1.02030 1.70027 1.37486 1.23953 1.24362 0.85546 0.78329 0.79107 0.78262 1.18522 1.20900 1.20433 1.48211 1.49376 1.13256 1.22718 1.21808 1.01387 0.80820 1.01880 1.21185 0.77624 0.86676 0.85177 1.90591 1.58952 1.19802 1.77547 1.21879 0.98847 0.91929 0.90908 0.88514 1.60450 1.06833 1.48052 1.16737 1.22691 0.90968 0.95187 0.98007 1.22852 0.95096 0.98565 0.95326 0.86458 1.22245 0.95542 1.02801 0.94090 1.22348 0.94842 1.01311 0.97176 1.22447 0.96794 0.99573 0.97416 1.22695 0.92483 0.98630 0.96240 0.86807 0.93249 0.96344 0.91554 0.92730 0.92805 0.89021 0.91280 0.83030 0.92186 0.90230 0.91544 0.89356 0.92452 0.90485 0.93682 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.91 16 2 C 0.26 14.26 2.63 44.24 0.12 14.38 16 3 H 0.00 0.14 6.90 -2.39 -0.02 0.12 16 4 C -0.53 -29.78 8.37 25.60 0.21 -29.57 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.51 11.32 21.45 0.24 -54.27 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.60 -26.26 2.75 -826.79 -2.28 -28.53 16 13 C 0.08 2.65 9.32 127.77 1.19 3.84 16 14 C 0.51 21.80 5.46 87.66 0.48 22.28 16 15 O -0.59 -32.08 14.97 -3.03 -0.05 -32.13 16 16 C 0.08 2.29 2.71 44.34 0.12 2.41 16 17 H 0.10 2.24 6.36 -2.38 -0.02 2.23 16 18 N -0.69 -19.53 6.54 -492.31 -3.22 -22.75 16 19 C 0.06 1.26 7.08 86.56 0.61 1.87 16 20 C -0.10 -1.84 3.93 -9.43 -0.04 -1.87 16 21 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 22 C -0.11 -2.00 6.38 31.34 0.20 -1.80 16 23 C -0.12 -2.90 6.82 31.65 0.22 -2.68 16 24 C -0.12 -4.14 5.07 31.78 0.16 -3.98 16 25 C -0.08 -2.06 3.48 -9.29 -0.03 -2.09 16 26 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.10 5.97 -2.39 -0.01 2.09 16 33 H 0.07 2.22 6.43 -2.38 -0.02 2.21 16 34 H 0.35 8.27 8.90 -89.69 -0.80 7.47 16 35 H 0.06 1.45 7.01 -2.39 -0.02 1.43 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.25 7.03 -2.38 -0.02 1.23 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.04 1.89 6.69 -2.39 -0.02 1.87 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.58 319.19 1.28 -73.30 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.21 Total: 20.28 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.33 Total: -1.94 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.25 Total: -105.54 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.05 Total: -32.13 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.58 1.28 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229094610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.770 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds