Wall clock time and date at job start Mon Mar 30 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47149 * 2 1 4 4 C 1.50704 * 109.46700 * 239.99910 * 2 1 3 5 5 O 1.21282 * 119.99740 * 256.95886 * 4 2 1 6 6 N 1.34769 * 119.99842 * 76.96235 * 4 2 1 7 7 C 1.46504 * 120.00395 * 4.91451 * 6 4 2 8 8 C 1.46503 * 120.00109 * 184.91691 * 6 4 2 9 9 C 1.50699 * 109.46821 * 89.99594 * 8 6 4 10 10 H 1.08000 * 120.00509 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99801 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00178 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47123 * 59.99832 * 13 11 9 15 15 H 1.48507 * 109.47379 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47176 * 300.00125 * 13 11 9 17 17 N 1.46904 * 109.47100 * 120.00375 * 2 1 3 18 18 C 1.49601 * 110.99903 * 171.26060 * 17 2 1 19 19 C 1.56745 * 99.23220 * 117.88704 * 18 17 2 20 20 C 1.55140 * 101.83333 * 43.30895 * 19 18 17 21 21 C 1.50238 * 110.99543 * 282.72899 * 17 2 1 22 22 C 1.52998 * 117.58149 * 63.42499 * 21 17 2 23 23 C 1.55700 * 108.30639 * 283.76977 * 21 17 2 24 24 H 1.08998 * 109.47249 * 56.87211 * 1 2 3 25 25 H 1.09000 * 109.47424 * 176.87772 * 1 2 3 26 26 H 1.09000 * 109.47057 * 296.86874 * 1 2 3 27 27 H 1.09003 * 109.47248 * 84.72406 * 7 6 4 28 28 H 1.08995 * 109.47212 * 204.72870 * 7 6 4 29 29 H 1.09000 * 109.47049 * 324.72998 * 7 6 4 30 30 H 1.09001 * 109.47403 * 209.99627 * 8 6 4 31 31 H 1.08997 * 109.46770 * 330.00262 * 8 6 4 32 32 H 0.97004 * 120.00004 * 179.97438 * 12 11 9 33 33 H 1.08999 * 111.44487 * 235.39341 * 18 17 2 34 34 H 1.09002 * 111.44459 * 0.38590 * 18 17 2 35 35 H 1.09008 * 118.97322 * 179.14844 * 19 18 17 36 36 H 1.08997 * 114.44314 * 183.28693 * 20 19 18 37 37 H 1.09005 * 114.47731 * 49.88132 * 20 19 18 38 38 H 1.09004 * 109.47258 * 49.74482 * 22 21 17 39 39 H 1.08996 * 109.47615 * 169.75062 * 22 21 17 40 40 H 1.08996 * 109.46904 * 289.75037 * 22 21 17 41 41 H 1.08997 * 114.52720 * 53.21209 * 23 21 17 42 42 H 1.08996 * 114.52688 * 186.89247 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.4578 -1.8430 -1.1456 6 7 2.0086 -0.0873 -2.4252 7 6 1.5963 1.3159 -2.5115 8 6 2.3951 -0.8130 -3.6378 9 6 1.1792 -1.4694 -4.2393 10 1 0.2150 -1.3570 -3.7660 11 6 1.2978 -2.2137 -5.3939 12 7 2.4720 -2.3502 -5.9705 13 14 -0.2093 -3.0268 -6.1400 14 1 -1.2129 -1.9878 -6.4843 15 1 0.1825 -3.7626 -7.3690 16 1 -0.7958 -3.9760 -5.1600 17 7 2.0197 -0.6926 1.1994 18 6 3.4999 -0.8990 1.1325 19 6 3.9281 -0.0557 2.3825 20 6 2.8658 -0.4789 3.4309 21 6 1.9078 0.1869 2.4123 22 6 0.5057 0.6157 2.8494 23 6 3.0560 1.2373 2.3624 24 1 -0.3633 0.5616 -0.8606 25 1 -0.3634 -1.0261 -0.0560 26 1 -0.3633 0.4645 0.9167 27 1 2.4517 1.9593 -2.3056 28 1 1.2188 1.5227 -3.5129 29 1 0.8116 1.5097 -1.7802 30 1 2.8249 -0.1158 -4.3571 31 1 3.1321 -1.5753 -3.3855 32 1 2.5555 -2.8741 -6.7826 33 1 3.7615 -1.9503 1.2524 34 1 3.9182 -0.4894 0.2131 35 1 4.9847 0.0002 2.6449 36 1 2.9419 0.0417 4.3855 37 1 2.7369 -1.5564 3.5336 38 1 -0.1416 -0.2597 2.9038 39 1 0.5595 1.0892 3.8297 40 1 0.1000 1.3230 2.1262 41 1 3.1099 1.8050 1.4334 42 1 3.1428 1.8556 3.2558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595915796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:32 Heat of formation + Delta-G solvation = 43.581209 kcal Electronic energy + Delta-G solvation = -21599.614587 eV Core-core repulsion = 18582.519393 eV Total energy + Delta-G solvation = -3017.095195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53389 -38.83247 -34.82030 -34.02253 -32.49472 -31.15833 -29.09714 -27.62024 -25.96185 -25.65920 -25.19072 -23.82080 -21.94787 -20.25994 -18.97212 -18.07406 -16.56398 -16.46466 -15.83378 -15.21064 -15.07160 -14.73783 -14.28487 -13.83808 -13.67440 -13.55523 -13.23948 -12.59743 -12.40334 -12.19360 -11.96212 -11.88152 -11.78288 -11.67114 -11.32714 -11.26504 -11.14933 -11.00441 -10.86958 -10.59817 -10.53328 -10.37805 -10.13829 -10.08479 -9.61707 -8.72446 -8.41858 -8.31213 -7.60423 -6.02648 -4.07565 3.33024 3.37422 3.38774 3.46289 3.65344 4.12048 4.23111 4.36555 4.44710 4.50060 4.70462 5.01777 5.11234 5.28668 5.32364 5.38426 5.39275 5.54433 5.57661 5.62655 5.63952 5.73057 5.79273 5.82788 5.86635 5.90667 5.97182 6.02009 6.07919 6.18537 6.23423 6.27817 6.49108 6.77700 6.97738 7.17966 7.46341 7.57190 7.94020 8.25166 8.44244 8.91974 9.13427 9.57596 11.05344 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032548 B = 0.004971 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.049205 B = 5631.376871 C = 5798.709966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 H 0.059 0.941 4 C 0.509 3.491 5 O -0.526 6.526 6 N -0.603 5.603 7 C 0.079 3.921 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.457 5.457 18 C 0.055 3.945 19 C -0.150 4.150 20 C -0.132 4.132 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.163 4.163 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 10.324 16.859 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.077 0.923 4 C 0.294 3.706 5 O -0.402 6.402 6 N -0.336 5.336 7 C -0.065 4.065 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.181 5.181 18 C -0.073 4.073 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.039 4.039 22 C -0.174 4.174 23 C -0.202 4.202 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.084 9.082 16.710 19.049 hybrid contribution -0.294 0.416 -0.765 0.919 sum -1.379 9.498 15.945 18.611 Atomic orbital electron populations 1.22071 0.92333 1.03768 1.02625 1.21876 0.97720 0.96345 0.90278 0.92323 1.20096 0.79463 0.86912 0.84109 1.90672 1.46000 1.18150 1.85402 1.48133 1.65577 1.11435 1.08457 1.21734 0.98668 0.82932 1.03167 1.19281 0.96441 0.92011 0.79581 1.21401 0.94590 1.31709 1.08845 0.92523 1.24935 0.96184 0.96131 0.96813 1.69927 1.22899 1.40633 1.19962 0.86559 0.82835 0.79602 0.78436 1.20260 1.21166 1.20147 1.66757 1.14419 1.36505 1.00430 1.23652 0.87345 1.00590 0.95702 1.24734 0.98181 0.96423 0.97559 1.23821 0.95796 1.01214 0.96146 1.24081 0.93756 0.93191 0.92895 1.21416 0.93931 1.01557 1.00510 1.24443 0.97861 0.95929 1.01962 0.91667 0.91288 0.90615 0.94086 0.90544 0.92303 0.95109 0.93815 0.92677 0.88682 0.91746 0.87689 0.89714 0.90759 0.91163 0.91987 0.91482 0.91928 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.96 37.16 0.33 -1.87 16 2 C 0.05 0.82 1.42 -68.86 -0.10 0.72 16 3 H 0.06 0.86 5.81 -51.93 -0.30 0.56 16 4 C 0.51 10.97 5.70 -10.99 -0.06 10.91 16 5 O -0.53 -13.59 14.65 5.56 0.08 -13.51 16 6 N -0.60 -13.14 2.86 -182.95 -0.52 -13.66 16 7 C 0.08 1.30 9.85 59.85 0.59 1.89 16 8 C 0.25 6.57 5.17 -5.19 -0.03 6.54 16 9 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 13 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 N -0.46 -7.22 5.20 -209.18 -1.09 -8.31 16 18 C 0.05 0.86 5.38 -0.29 0.00 0.86 16 19 C -0.15 -1.77 6.39 -91.85 -0.59 -2.36 16 20 C -0.13 -1.45 7.32 -31.33 -0.23 -1.68 16 21 C 0.05 0.61 1.70 -133.28 -0.23 0.38 16 22 C -0.12 -1.14 8.40 37.16 0.31 -0.82 16 23 C -0.16 -1.75 7.37 -30.42 -0.22 -1.98 16 24 H 0.06 0.91 6.23 -51.93 -0.32 0.59 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.08 0.89 4.01 -51.93 -0.21 0.68 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 29 H 0.06 0.81 4.85 -51.93 -0.25 0.56 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.06 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 41 H 0.06 0.72 7.04 -51.93 -0.37 0.36 16 42 H 0.09 0.82 7.86 -51.93 -0.41 0.41 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -33.10 322.31 -8.25 -41.35 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.65 Total: -0.43 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.64 Total: -1.20 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.87 Total: -48.15 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.10 -8.25 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.927 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds