Wall clock time and date at job start Mon Mar 30 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47149 * 2 1 4 4 C 1.50704 * 109.46700 * 239.99910 * 2 1 3 5 5 O 1.21282 * 119.99740 * 256.95886 * 4 2 1 6 6 N 1.34769 * 119.99842 * 76.96235 * 4 2 1 7 7 C 1.46504 * 120.00395 * 4.91451 * 6 4 2 8 8 C 1.46503 * 120.00109 * 184.91691 * 6 4 2 9 9 C 1.50699 * 109.46821 * 89.99594 * 8 6 4 10 10 H 1.08000 * 120.00509 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99801 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00178 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47123 * 59.99832 * 13 11 9 15 15 H 1.48507 * 109.47379 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47176 * 300.00125 * 13 11 9 17 17 N 1.46904 * 109.47100 * 120.00375 * 2 1 3 18 18 C 1.49601 * 110.99903 * 171.26060 * 17 2 1 19 19 C 1.56745 * 99.23220 * 117.88704 * 18 17 2 20 20 C 1.55140 * 101.83333 * 43.30895 * 19 18 17 21 21 C 1.50238 * 110.99543 * 282.72899 * 17 2 1 22 22 C 1.52998 * 117.58149 * 63.42499 * 21 17 2 23 23 C 1.55700 * 108.30639 * 283.76977 * 21 17 2 24 24 H 1.08998 * 109.47249 * 56.87211 * 1 2 3 25 25 H 1.09000 * 109.47424 * 176.87772 * 1 2 3 26 26 H 1.09000 * 109.47057 * 296.86874 * 1 2 3 27 27 H 1.09003 * 109.47248 * 84.72406 * 7 6 4 28 28 H 1.08995 * 109.47212 * 204.72870 * 7 6 4 29 29 H 1.09000 * 109.47049 * 324.72998 * 7 6 4 30 30 H 1.09001 * 109.47403 * 209.99627 * 8 6 4 31 31 H 1.08997 * 109.46770 * 330.00262 * 8 6 4 32 32 H 0.97004 * 120.00004 * 179.97438 * 12 11 9 33 33 H 1.08999 * 111.44487 * 235.39341 * 18 17 2 34 34 H 1.09002 * 111.44459 * 0.38590 * 18 17 2 35 35 H 1.09008 * 118.97322 * 179.14844 * 19 18 17 36 36 H 1.08997 * 114.44314 * 183.28693 * 20 19 18 37 37 H 1.09005 * 114.47731 * 49.88132 * 20 19 18 38 38 H 1.09004 * 109.47258 * 49.74482 * 22 21 17 39 39 H 1.08996 * 109.47615 * 169.75062 * 22 21 17 40 40 H 1.08996 * 109.46904 * 289.75037 * 22 21 17 41 41 H 1.08997 * 114.52720 * 53.21209 * 23 21 17 42 42 H 1.08996 * 114.52688 * 186.89247 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.4578 -1.8430 -1.1456 6 7 2.0086 -0.0873 -2.4252 7 6 1.5963 1.3159 -2.5115 8 6 2.3951 -0.8130 -3.6378 9 6 1.1792 -1.4694 -4.2393 10 1 0.2150 -1.3570 -3.7660 11 6 1.2978 -2.2137 -5.3939 12 7 2.4720 -2.3502 -5.9705 13 14 -0.2093 -3.0268 -6.1400 14 1 -1.2129 -1.9878 -6.4843 15 1 0.1825 -3.7626 -7.3690 16 1 -0.7958 -3.9760 -5.1600 17 7 2.0197 -0.6926 1.1994 18 6 3.4999 -0.8990 1.1325 19 6 3.9281 -0.0557 2.3825 20 6 2.8658 -0.4789 3.4309 21 6 1.9078 0.1869 2.4123 22 6 0.5057 0.6157 2.8494 23 6 3.0560 1.2373 2.3624 24 1 -0.3633 0.5616 -0.8606 25 1 -0.3634 -1.0261 -0.0560 26 1 -0.3633 0.4645 0.9167 27 1 2.4517 1.9593 -2.3056 28 1 1.2188 1.5227 -3.5129 29 1 0.8116 1.5097 -1.7802 30 1 2.8249 -0.1158 -4.3571 31 1 3.1321 -1.5753 -3.3855 32 1 2.5555 -2.8741 -6.7826 33 1 3.7615 -1.9503 1.2524 34 1 3.9182 -0.4894 0.2131 35 1 4.9847 0.0002 2.6449 36 1 2.9419 0.0417 4.3855 37 1 2.7369 -1.5564 3.5336 38 1 -0.1416 -0.2597 2.9038 39 1 0.5595 1.0892 3.8297 40 1 0.1000 1.3230 2.1262 41 1 3.1099 1.8050 1.4334 42 1 3.1428 1.8556 3.2558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595915796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:32 Heat of formation + Delta-G solvation = 20.173746 kcal Electronic energy + Delta-G solvation = -21600.629611 eV Core-core repulsion = 18582.519393 eV Total energy + Delta-G solvation = -3018.110218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59208 -40.46421 -36.65472 -35.42168 -34.55313 -32.12111 -30.45630 -29.35266 -27.48801 -26.73200 -26.08421 -25.63860 -23.55176 -21.34917 -20.15158 -19.50652 -18.69837 -17.99588 -17.25339 -16.67359 -16.40509 -16.16829 -16.01993 -15.12736 -14.86071 -14.77841 -14.26648 -14.13001 -14.03546 -13.66822 -13.53555 -13.16780 -13.07489 -12.88406 -12.79565 -12.66326 -12.57873 -12.44433 -12.31262 -12.19453 -12.09366 -11.74828 -11.54857 -11.30973 -11.01759 -10.66630 -10.39472 -9.48882 -9.41562 -8.24622 -6.40110 1.34758 1.39597 1.46805 1.76995 2.20304 2.38961 2.85248 3.04706 3.34010 3.40836 3.50792 3.66165 3.77124 4.02949 4.16170 4.22083 4.32339 4.36516 4.60586 4.65871 4.71503 4.72840 4.79697 4.83089 4.86197 4.88974 4.92902 4.95291 5.00573 5.02716 5.15827 5.18820 5.26448 5.29841 5.45677 5.52580 5.69441 5.79612 5.99530 6.03164 6.67036 6.74622 7.25490 7.45159 8.82445 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032548 B = 0.004971 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.049205 B = 5631.376871 C = 5798.709966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.083 0.917 4 C 0.498 3.502 5 O -0.583 6.583 6 N -0.610 5.610 7 C 0.074 3.926 8 C 0.261 3.739 9 C -0.544 4.544 10 H 0.054 0.946 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.279 1.279 17 N -0.485 5.485 18 C 0.048 3.952 19 C -0.151 4.151 20 C -0.123 4.123 21 C 0.042 3.958 22 C -0.116 4.116 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.023 0.977 31 H -0.006 1.006 32 H 0.268 0.732 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 12.860 18.877 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 H 0.101 0.899 4 C 0.287 3.713 5 O -0.463 6.463 6 N -0.342 5.342 7 C -0.068 4.068 8 C 0.139 3.861 9 C -0.582 4.582 10 H 0.072 0.928 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.204 1.204 17 N -0.209 5.209 18 C -0.080 4.080 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.047 4.047 22 C -0.173 4.173 23 C -0.185 4.185 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.953 11.677 18.743 22.280 hybrid contribution 0.359 -0.393 -1.367 1.467 sum -2.594 11.284 17.377 20.881 Atomic orbital electron populations 1.22122 0.90718 1.02560 1.04939 1.21763 0.98606 0.96416 0.87797 0.89902 1.21166 0.78187 0.86554 0.85431 1.90632 1.48346 1.20962 1.86394 1.48161 1.65473 1.13425 1.07172 1.22033 1.00775 0.79886 1.04146 1.18743 0.94902 0.91088 0.81333 1.21661 0.94851 1.32427 1.09308 0.92808 1.25886 0.99488 0.96531 0.97230 1.70054 1.25139 1.41243 1.20425 0.85451 0.79045 0.78746 0.77475 1.18186 1.20215 1.20444 1.66717 1.14054 1.38586 1.01539 1.23470 0.88174 0.99706 0.96624 1.24676 0.99534 0.97044 0.95684 1.23885 0.94561 1.00508 0.97114 1.24309 0.95796 0.93484 0.91144 1.21463 0.92008 1.01524 1.02292 1.24492 0.95739 0.95072 1.03213 0.90808 0.94112 0.86981 0.91430 0.90902 0.89053 0.95894 0.98751 0.92358 0.91576 0.94718 0.86163 0.86164 0.92731 0.92066 0.89055 0.90607 0.92635 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.96 71.98 0.64 -3.37 16 2 C 0.07 2.12 1.42 44.17 0.06 2.18 16 3 H 0.08 2.24 5.81 -2.39 -0.01 2.22 16 4 C 0.50 22.36 5.70 87.66 0.50 22.86 16 5 O -0.58 -32.43 14.65 -3.04 -0.04 -32.48 16 6 N -0.61 -27.35 2.86 -851.13 -2.43 -29.78 16 7 C 0.07 2.31 9.85 127.77 1.26 3.57 16 8 C 0.26 14.68 5.17 85.63 0.44 15.13 16 9 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 10 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 13 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 N -0.48 -15.23 5.20 -815.73 -4.24 -19.48 16 18 C 0.05 1.59 5.38 87.09 0.47 2.06 16 19 C -0.15 -3.32 6.39 -11.59 -0.07 -3.39 16 20 C -0.12 -2.37 7.32 27.62 0.20 -2.17 16 21 C 0.04 0.88 1.70 0.57 0.00 0.88 16 22 C -0.12 -1.76 8.40 71.98 0.60 -1.15 16 23 C -0.15 -2.58 7.37 28.21 0.21 -2.37 16 24 H 0.07 1.88 6.23 -2.39 -0.01 1.86 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.11 2.24 4.01 -2.39 -0.01 2.23 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.35 8.03 -2.39 -0.02 2.33 16 29 H 0.09 2.27 4.85 -2.39 -0.01 2.25 16 30 H 0.02 1.30 8.07 -2.39 -0.02 1.29 16 31 H -0.01 -0.37 7.36 -2.39 -0.02 -0.39 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 35 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.12 1.52 7.86 -2.39 -0.02 1.50 16 37 H 0.05 1.27 8.11 -2.38 -0.02 1.25 16 38 H 0.06 1.06 8.07 -2.38 -0.02 1.04 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.02 6.19 -2.39 -0.01 1.00 16 41 H 0.05 1.08 7.04 -2.39 -0.02 1.07 16 42 H 0.13 1.45 7.86 -2.39 -0.02 1.43 16 Total: -1.00 -77.78 322.31 1.61 -76.17 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.00 Total: 11.88 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.02 Total: 3.11 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -6.39 Total: -106.50 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.04 Total: -32.48 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.78 1.61 -76.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.344 kcal (2) G-P(sol) polarization free energy of solvation -77.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds