Wall clock time and date at job start Mon Mar 30 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.42292 * 2 1 4 4 O 1.44426 * 110.36922 * 122.30402 * 2 1 3 5 5 C 1.44425 * 105.27462 * 159.34402 * 4 2 1 6 6 H 1.09003 * 110.37510 * 78.42783 * 5 4 2 7 7 C 1.53002 * 110.37485 * 200.65713 * 5 4 2 8 8 C 1.54486 * 104.80468 * 319.48864 * 5 4 2 9 9 H 1.08999 * 110.51203 * 142.61928 * 8 5 4 10 10 C 1.52998 * 110.51042 * 265.33518 * 8 5 4 11 11 C 1.54477 * 110.37496 * 237.68640 * 2 1 3 12 12 H 1.09001 * 110.51252 * 98.40778 * 11 2 1 13 13 N 1.46900 * 110.51028 * 335.83793 * 11 2 1 14 14 C 1.46900 * 111.00056 * 154.63505 * 13 11 2 15 15 C 1.53004 * 109.46968 * 175.11914 * 14 13 11 16 16 H 1.09000 * 109.46985 * 304.99882 * 15 14 13 17 17 C 1.47201 * 109.47311 * 65.00120 * 15 14 13 18 18 N 5.47238 * 47.62524 * 236.16371 * 2 1 3 19 19 C 1.53005 * 109.46914 * 185.00026 * 15 14 13 20 20 C 1.50699 * 109.46890 * 175.00159 * 19 15 14 21 21 H 1.08000 * 120.00127 * 359.97438 * 20 19 15 22 22 C 1.37881 * 119.99764 * 180.02562 * 20 19 15 23 23 N 1.31510 * 120.00009 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47173 * 90.00305 * 24 22 20 26 26 H 1.48504 * 109.47085 * 210.00600 * 24 22 20 27 27 H 1.48500 * 109.47074 * 330.00280 * 24 22 20 28 28 H 1.09002 * 109.47492 * 304.86227 * 1 2 3 29 29 H 1.09004 * 109.46842 * 64.86340 * 1 2 3 30 30 H 1.09001 * 109.47218 * 184.85852 * 1 2 3 31 31 H 1.09000 * 109.47127 * 58.54780 * 7 5 4 32 32 H 1.09001 * 109.46932 * 298.54593 * 7 5 4 33 33 H 1.08996 * 109.47157 * 178.54632 * 7 5 4 34 34 H 1.08993 * 109.47320 * 58.54473 * 10 8 5 35 35 H 1.09004 * 109.46420 * 178.54506 * 10 8 5 36 36 H 1.08998 * 109.46878 * 298.54422 * 10 8 5 37 37 H 1.00897 * 111.00370 * 30.67685 * 13 11 2 38 38 H 1.09000 * 109.46959 * 295.11709 * 14 13 11 39 39 H 1.09007 * 109.47110 * 55.11925 * 14 13 11 40 40 H 1.08999 * 109.46772 * 294.99762 * 19 15 14 41 41 H 1.08999 * 109.47013 * 54.99954 * 19 15 14 42 42 H 0.96995 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 1.1444 5 6 3.3873 -1.0871 0.7997 6 1 4.0528 -0.2328 0.9241 7 6 3.8600 -2.2593 1.6619 8 6 3.3178 -1.5058 -0.6857 9 1 4.2109 -1.1774 -1.2173 10 6 3.1461 -3.0212 -0.8081 11 6 2.0678 -0.7741 -1.2239 12 1 2.3407 -0.0842 -2.0224 13 7 1.0702 -1.7416 -1.7000 14 6 1.2627 -2.0378 -3.1259 15 6 0.2872 -3.1356 -3.5550 16 1 0.4121 -4.0052 -2.9097 17 6 -1.0931 -2.6364 -3.4438 18 7 -2.1583 -2.2511 -3.3580 19 6 0.5710 -3.5317 -5.0053 20 6 -0.3060 -4.6956 -5.3890 21 1 -0.9965 -5.1114 -4.6702 22 6 -0.2262 -5.2302 -6.6574 23 7 -0.9919 -6.2455 -6.9924 24 14 0.9686 -4.5114 -7.9005 25 1 2.2746 -5.2099 -7.7930 26 1 0.4237 -4.6885 -9.2705 27 1 1.1572 -3.0642 -7.6261 28 1 -0.3634 0.5874 0.8432 29 1 -0.3633 0.4365 -0.9304 30 1 -0.3634 -1.0240 0.0870 31 1 3.1937 -3.1095 1.5161 32 1 3.8500 -1.9655 2.7115 33 1 4.8732 -2.5379 1.3723 34 1 2.2376 -3.3270 -0.2895 35 1 3.0733 -3.2946 -1.8607 36 1 4.0054 -3.5213 -0.3613 37 1 0.1333 -1.4120 -1.5224 38 1 1.0775 -1.1377 -3.7121 39 1 2.2858 -2.3755 -3.2919 40 1 0.3604 -2.6865 -5.6606 41 1 1.6182 -3.8172 -5.1057 42 1 -0.9355 -6.6219 -7.8846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599623214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:32 Heat of formation + Delta-G solvation = -42.223696 kcal Electronic energy + Delta-G solvation = -20908.476354 eV Core-core repulsion = 17887.660379 eV Total energy + Delta-G solvation = -3020.815974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18180 -38.70273 -36.49584 -35.40503 -34.70628 -33.83052 -31.43158 -29.87767 -28.59129 -27.35296 -24.43585 -23.98417 -23.30766 -21.45464 -20.37399 -18.97258 -18.39417 -17.78361 -17.01636 -16.66085 -16.18377 -15.95134 -15.33117 -15.23351 -14.91419 -14.42059 -14.32291 -14.06754 -13.81044 -13.71621 -13.49439 -13.17880 -13.10916 -12.98311 -12.84153 -12.80036 -12.47901 -12.20813 -12.14609 -11.98695 -11.76984 -11.66606 -11.50274 -11.38757 -11.33552 -11.17816 -10.72424 -10.52994 -9.30417 -8.24035 -6.29811 1.43009 1.45831 1.55922 1.93619 1.95611 2.41555 2.90326 3.11788 3.14035 3.23724 3.62219 3.77027 4.05771 4.16022 4.17124 4.28219 4.36499 4.45086 4.52495 4.53805 4.62045 4.65411 4.75347 4.82561 4.89160 4.92824 4.93839 5.07820 5.13860 5.17502 5.23818 5.30618 5.38347 5.46790 5.48231 5.64162 5.78767 5.99915 6.15580 6.27457 6.38079 6.74473 6.80685 7.34719 8.93089 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.004647 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.413168 B = 6024.451162 C = 6558.953565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.387 6.387 5 C 0.070 3.930 6 H 0.077 0.923 7 C -0.145 4.145 8 C -0.109 4.109 9 H 0.097 0.903 10 C -0.122 4.122 11 C 0.056 3.944 12 H 0.075 0.925 13 N -0.685 5.685 14 C 0.074 3.926 15 C 0.025 3.975 16 H 0.116 0.884 17 C 0.248 3.752 18 N -0.505 5.505 19 C -0.001 4.001 20 C -0.531 4.531 21 H 0.027 0.973 22 C 0.003 3.997 23 N -0.955 5.955 24 Si 0.950 3.050 25 H -0.256 1.256 26 H -0.296 1.296 27 H -0.237 1.237 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.340 0.660 38 H 0.042 0.958 39 H 0.113 0.887 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.443 13.966 13.603 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 H 0.104 0.896 4 O -0.308 6.308 5 C 0.013 3.987 6 H 0.095 0.905 7 C -0.202 4.202 8 C -0.128 4.128 9 H 0.115 0.885 10 C -0.179 4.179 11 C -0.054 4.054 12 H 0.093 0.907 13 N -0.320 5.320 14 C -0.056 4.056 15 C 0.003 3.997 16 H 0.134 0.866 17 C -0.068 4.068 18 N -0.183 5.183 19 C -0.040 4.040 20 C -0.569 4.569 21 H 0.045 0.955 22 C -0.194 4.194 23 N -0.596 5.596 24 Si 0.772 3.228 25 H -0.181 1.181 26 H -0.223 1.223 27 H -0.160 1.160 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.163 0.837 38 H 0.061 0.939 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.015 13.851 14.030 24.190 hybrid contribution -0.314 0.284 -1.375 1.439 sum 13.701 14.136 12.655 23.403 Atomic orbital electron populations 1.21794 0.93949 1.02665 1.02769 1.23143 0.95062 0.95478 0.85009 0.89594 1.89141 1.28420 1.74775 1.38419 1.23149 0.83787 0.97580 0.94168 0.90505 1.21876 1.01911 0.97261 0.99201 1.22619 0.97209 0.97661 0.95337 0.88493 1.21595 1.00863 0.93479 1.01944 1.22986 0.93014 0.92546 0.96845 0.90702 1.60698 1.07380 1.47247 1.16694 1.22108 0.99868 0.95868 0.87785 1.19089 0.81323 0.99235 1.00054 0.86633 1.29731 0.95401 0.91282 0.90406 1.81042 1.13082 1.12397 1.11766 1.19573 0.98255 0.95354 0.90841 1.21403 1.21878 1.15512 0.98152 0.95475 1.26048 0.97681 0.94865 1.00763 1.70091 1.41955 1.26381 1.21136 0.85673 0.79162 0.80942 0.76984 1.18087 1.22273 1.15995 0.91086 0.90902 0.92224 0.92263 0.92591 0.89523 0.93143 0.92547 0.92616 0.83746 0.93939 0.86857 0.95495 0.91876 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.27 71.98 0.59 -2.49 16 2 C 0.07 1.34 3.89 31.10 0.12 1.46 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 O -0.39 -8.77 11.04 -148.98 -1.64 -10.42 16 5 C 0.07 1.21 3.84 31.10 0.12 1.33 16 6 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 7 C -0.15 -2.30 8.41 71.98 0.61 -1.69 16 8 C -0.11 -1.80 3.63 -9.77 -0.04 -1.84 16 9 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 10 C -0.12 -2.33 6.88 71.98 0.50 -1.84 16 11 C 0.06 1.03 3.33 45.93 0.15 1.18 16 12 H 0.08 1.18 7.86 -2.39 -0.02 1.16 16 13 N -0.69 -15.55 4.55 -486.31 -2.21 -17.76 16 14 C 0.07 1.75 4.38 86.30 0.38 2.13 16 15 C 0.02 0.83 2.42 -12.60 -0.03 0.80 16 16 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 17 C 0.25 9.76 13.06 89.44 1.17 10.93 16 18 N -0.51 -22.00 18.54 20.01 0.37 -21.63 16 19 C 0.00 -0.05 3.49 29.85 0.10 0.06 16 20 C -0.53 -28.67 9.15 25.60 0.23 -28.43 16 21 H 0.03 1.66 7.84 -2.91 -0.02 1.64 16 22 C 0.00 0.17 5.47 84.66 0.46 0.63 16 23 N -0.95 -59.17 13.96 21.45 0.30 -58.88 16 24 Si 0.95 41.15 27.47 68.60 1.88 43.03 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 27 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.36 7.86 -2.39 -0.02 1.34 16 30 H 0.06 1.42 6.93 -2.39 -0.02 1.40 16 31 H 0.06 1.10 6.44 -2.39 -0.02 1.09 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.02 7.89 -2.39 -0.02 1.00 16 34 H 0.05 1.20 7.19 -2.39 -0.02 1.18 16 35 H 0.06 1.12 5.98 -2.38 -0.01 1.11 16 36 H 0.05 0.92 6.84 -2.39 -0.02 0.90 16 37 H 0.34 8.46 4.52 -89.70 -0.41 8.05 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 2.27 6.54 -2.38 -0.02 2.25 16 40 H 0.03 1.07 7.20 -2.39 -0.02 1.05 16 41 H 0.06 2.21 7.57 -2.39 -0.02 2.19 16 42 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -68.12 328.50 3.61 -64.51 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.54 Total: 18.91 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.37 Total: -17.78 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -1.54 Total: -98.26 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.64 Total: -10.42 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Total: -68.12 3.61 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599623214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.285 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds