Wall clock time and date at job start Mon Mar 30 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47612 * 2 1 4 4 N 1.46901 * 109.47283 * 239.99914 * 2 1 3 5 5 C 1.46902 * 110.99983 * 85.00056 * 4 2 1 6 6 C 1.50696 * 109.46978 * 180.02562 * 5 4 2 7 7 O 1.21295 * 120.00238 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00076 * 180.02562 * 6 5 4 9 9 C 1.37105 * 120.00244 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99708 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00017 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99901 * 359.71836 * 11 9 8 13 13 Si 1.86800 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72210 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72333 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72143 * 13 11 9 17 17 C 1.52999 * 109.46998 * 120.00177 * 2 1 3 18 18 C 1.52309 * 115.91433 * 8.28699 * 17 2 1 19 19 C 1.52064 * 115.93075 * 299.99801 * 17 2 1 20 20 H 1.09001 * 117.25487 * 0.46557 * 19 17 2 21 21 C 1.52709 * 120.52789 * 210.74025 * 19 17 2 22 22 C 1.52881 * 110.15200 * 21.46695 * 21 19 17 23 23 C 1.53301 * 108.58272 * 305.48216 * 22 21 19 24 24 C 1.52073 * 114.63905 * 153.37878 * 17 2 1 25 25 H 1.09000 * 109.47224 * 300.00381 * 1 2 3 26 26 H 1.09002 * 109.47272 * 59.99580 * 1 2 3 27 27 H 1.09001 * 109.47612 * 179.97438 * 1 2 3 28 28 H 1.00903 * 110.99970 * 208.96030 * 4 2 1 29 29 H 1.08999 * 109.46697 * 60.00741 * 5 4 2 30 30 H 1.08993 * 109.47253 * 300.00391 * 5 4 2 31 31 H 0.97004 * 119.99652 * 359.97438 * 8 6 5 32 32 H 0.97000 * 120.00371 * 0.28325 * 12 11 9 33 33 H 1.08997 * 117.53494 * 0.84777 * 18 17 2 34 34 H 1.08998 * 117.53664 * 146.09698 * 18 17 2 35 35 H 1.08995 * 109.36247 * 141.67272 * 21 19 17 36 36 H 1.08998 * 109.35731 * 261.26607 * 21 19 17 37 37 H 1.09004 * 109.61878 * 65.20564 * 22 21 19 38 38 H 1.08997 * 109.62098 * 185.56716 * 22 21 19 39 39 H 1.08997 * 109.61799 * 194.17270 * 23 22 21 40 40 H 1.08994 * 109.61514 * 314.71133 * 23 22 21 41 41 H 1.09004 * 109.27120 * 285.89182 * 24 17 2 42 42 H 1.09001 * 109.26663 * 45.35803 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8677 -1.6988 -3.4701 8 7 2.7283 0.1204 -4.7325 9 6 3.1871 -0.5570 -5.8326 10 1 3.4360 -1.6051 -5.7564 11 6 3.3319 0.1050 -7.0456 12 7 3.0238 1.3790 -7.1397 13 14 3.9578 -0.8177 -8.5444 14 1 4.0149 0.1057 -9.7060 15 1 5.3166 -1.3488 -8.2669 16 1 3.0395 -1.9435 -8.8517 17 6 2.0399 -0.7213 1.2492 18 6 0.9836 -1.4320 2.0853 19 6 1.6169 -0.1231 2.5817 20 1 0.9814 0.7621 2.5523 21 6 2.5220 -0.2387 3.8062 22 6 3.9652 -0.4954 3.3720 23 6 3.9892 -1.7277 2.4603 24 6 3.4163 -1.3506 1.1005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9172 -1.1206 -1.0286 29 1 2.7589 1.0461 -2.1182 30 1 1.0871 0.6163 -2.5525 31 1 2.5044 1.0617 -4.8010 32 1 2.6992 1.8583 -6.3614 33 1 -0.0476 -1.3917 1.7347 34 1 1.2750 -2.3548 2.5869 35 1 2.4764 0.6881 4.3781 36 1 2.1807 -1.0638 4.4312 37 1 4.3431 0.3700 2.8275 38 1 4.5854 -0.6745 4.2503 39 1 5.0151 -2.0769 2.3440 40 1 3.3782 -2.5177 2.8968 41 1 3.3374 -2.2469 0.4852 42 1 4.0861 -0.6402 0.6159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708842480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:13 Heat of formation + Delta-G solvation = -25.198430 kcal Electronic energy + Delta-G solvation = -20562.904828 eV Core-core repulsion = 17542.827125 eV Total energy + Delta-G solvation = -3020.077704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44193 -38.32554 -35.87821 -34.26678 -33.33831 -31.14957 -30.80256 -29.47640 -26.72470 -24.82624 -23.90924 -22.97866 -21.77127 -20.17093 -19.62166 -18.01849 -17.87853 -17.07797 -15.70740 -15.36223 -14.99291 -14.59754 -14.23950 -14.10693 -13.96489 -13.70861 -13.70075 -13.45153 -12.83652 -12.41643 -12.28093 -11.98629 -11.75667 -11.64256 -11.43844 -11.19524 -11.08492 -10.99307 -10.91698 -10.75139 -10.25762 -10.18908 -9.84251 -9.78602 -9.57647 -9.51595 -8.44548 -8.04985 -7.98682 -6.72844 -3.85720 3.33118 3.36445 3.56295 3.57881 3.88272 4.15806 4.36600 4.46463 4.62994 4.64306 4.81146 4.91582 5.05579 5.06893 5.10455 5.27030 5.28807 5.37470 5.40177 5.53576 5.60961 5.65508 5.70983 5.77519 5.78787 5.83174 5.92045 5.94699 6.00240 6.04631 6.08540 6.13927 6.15067 6.21053 6.27750 6.38536 7.26284 7.70492 7.84262 8.10837 8.63400 8.83169 9.50773 9.91488 10.70724 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.003614 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.091783 B = 7746.151220 C = 8063.701703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.116 3.884 3 H 0.042 0.958 4 N -0.664 5.664 5 C 0.050 3.950 6 C 0.444 3.556 7 O -0.576 6.576 8 N -0.577 5.577 9 C -0.382 4.382 10 H 0.099 0.901 11 C -0.010 4.010 12 N -0.902 5.902 13 Si 1.091 2.909 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.103 4.103 18 C -0.176 4.176 19 C -0.145 4.145 20 H 0.100 0.900 21 C -0.087 4.087 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.089 4.089 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.352 0.648 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.375 0.625 32 H 0.261 0.739 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 0.041 20.258 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.006 3.994 3 H 0.060 0.940 4 N -0.299 5.299 5 C -0.083 4.083 6 C 0.230 3.770 7 O -0.460 6.460 8 N -0.215 5.215 9 C -0.511 4.511 10 H 0.116 0.884 11 C -0.212 4.212 12 N -0.541 5.541 13 Si 0.917 3.083 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.103 4.103 18 C -0.213 4.213 19 C -0.164 4.164 20 H 0.118 0.882 21 C -0.124 4.124 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.208 0.792 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.994 -0.861 18.492 18.619 hybrid contribution 0.126 1.045 1.798 2.083 sum -1.868 0.184 20.290 20.377 Atomic orbital electron populations 1.21945 0.94772 1.02469 1.00795 1.21061 0.95572 0.94905 0.87854 0.93978 1.60187 1.35323 1.31819 1.02556 1.21726 1.01049 0.93996 0.91550 1.19756 0.84826 0.88227 0.84183 1.90522 1.54792 1.16041 1.84605 1.41941 1.59052 1.11523 1.08978 1.20536 1.43837 0.97858 0.88876 0.88355 1.26504 0.97063 0.96673 1.00983 1.70898 1.42005 1.08660 1.32581 0.83132 0.76420 0.74549 0.74154 1.20432 1.21040 1.20997 1.21111 0.95898 1.02245 0.91046 1.23409 0.98583 0.95633 1.03686 1.22320 1.02125 0.97521 0.94442 0.88201 1.21027 0.94361 1.01514 0.95530 1.21559 0.96350 0.98542 0.99234 1.21476 1.00845 0.97766 0.95527 1.20727 0.93507 1.00888 0.97549 0.92840 0.92726 0.91388 0.82548 0.94134 0.89774 0.79177 0.92789 0.87986 0.89113 0.91900 0.91815 0.91791 0.92106 0.91676 0.91919 0.90352 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.97 37.15 0.30 -1.44 16 2 C 0.12 1.55 2.84 -67.72 -0.19 1.36 16 3 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 4 N -0.66 -11.27 5.92 -108.00 -0.64 -11.91 16 5 C 0.05 0.91 5.97 -4.98 -0.03 0.88 16 6 C 0.44 10.82 7.82 -10.99 -0.09 10.73 16 7 O -0.58 -16.14 15.78 5.54 0.09 -16.05 16 8 N -0.58 -14.86 5.28 -10.96 -0.06 -14.92 16 9 C -0.38 -10.94 9.68 -14.93 -0.14 -11.08 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 11 C -0.01 -0.28 5.50 -17.47 -0.10 -0.37 16 12 N -0.90 -25.62 13.68 55.50 0.76 -24.86 16 13 Si 1.09 24.60 29.92 -169.99 -5.09 19.51 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.10 -1.19 2.45 -155.81 -0.38 -1.57 16 18 C -0.18 -1.85 8.64 -26.75 -0.23 -2.08 16 19 C -0.15 -1.43 5.50 -90.91 -0.50 -1.93 16 20 H 0.10 0.95 7.44 -51.93 -0.39 0.56 16 21 C -0.09 -0.74 5.83 -26.94 -0.16 -0.90 16 22 C -0.12 -1.05 5.93 -26.64 -0.16 -1.21 16 23 C -0.12 -1.15 5.67 -26.93 -0.15 -1.30 16 24 C -0.09 -1.05 4.00 -27.56 -0.11 -1.16 16 25 H 0.05 0.54 6.85 -51.93 -0.36 0.19 16 26 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 27 H 0.07 0.88 6.87 -51.93 -0.36 0.52 16 28 H 0.35 6.18 5.56 -39.29 -0.22 5.96 16 29 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 30 H 0.08 1.44 7.44 -51.93 -0.39 1.05 16 31 H 0.38 8.93 6.73 -40.82 -0.27 8.66 16 32 H 0.26 7.13 6.78 -40.82 -0.28 6.85 16 33 H 0.10 1.06 5.59 -51.93 -0.29 0.77 16 34 H 0.09 0.92 7.26 -51.93 -0.38 0.54 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.51 8.06 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.59 7.11 -51.93 -0.37 0.22 16 41 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 42 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -31.98 323.70 -8.58 -40.56 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.58 Total: 12.88 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.94 Total: -10.09 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.06 Total: -51.69 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.51 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.98 -8.58 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708842480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds