Wall clock time and date at job start Mon Mar 30 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47612 * 2 1 4 4 N 1.46901 * 109.47283 * 239.99914 * 2 1 3 5 5 C 1.46902 * 110.99983 * 85.00056 * 4 2 1 6 6 C 1.50696 * 109.46978 * 180.02562 * 5 4 2 7 7 O 1.21295 * 120.00238 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00076 * 180.02562 * 6 5 4 9 9 C 1.37105 * 120.00244 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99708 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00017 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99901 * 359.71836 * 11 9 8 13 13 Si 1.86800 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72210 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72333 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72143 * 13 11 9 17 17 C 1.52999 * 109.46998 * 120.00177 * 2 1 3 18 18 C 1.52309 * 115.91433 * 8.28699 * 17 2 1 19 19 C 1.52064 * 115.93075 * 299.99801 * 17 2 1 20 20 H 1.09001 * 117.25487 * 0.46557 * 19 17 2 21 21 C 1.52709 * 120.52789 * 210.74025 * 19 17 2 22 22 C 1.52881 * 110.15200 * 21.46695 * 21 19 17 23 23 C 1.53301 * 108.58272 * 305.48216 * 22 21 19 24 24 C 1.52073 * 114.63905 * 153.37878 * 17 2 1 25 25 H 1.09000 * 109.47224 * 300.00381 * 1 2 3 26 26 H 1.09002 * 109.47272 * 59.99580 * 1 2 3 27 27 H 1.09001 * 109.47612 * 179.97438 * 1 2 3 28 28 H 1.00903 * 110.99970 * 208.96030 * 4 2 1 29 29 H 1.08999 * 109.46697 * 60.00741 * 5 4 2 30 30 H 1.08993 * 109.47253 * 300.00391 * 5 4 2 31 31 H 0.97004 * 119.99652 * 359.97438 * 8 6 5 32 32 H 0.97000 * 120.00371 * 0.28325 * 12 11 9 33 33 H 1.08997 * 117.53494 * 0.84777 * 18 17 2 34 34 H 1.08998 * 117.53664 * 146.09698 * 18 17 2 35 35 H 1.08995 * 109.36247 * 141.67272 * 21 19 17 36 36 H 1.08998 * 109.35731 * 261.26607 * 21 19 17 37 37 H 1.09004 * 109.61878 * 65.20564 * 22 21 19 38 38 H 1.08997 * 109.62098 * 185.56716 * 22 21 19 39 39 H 1.08997 * 109.61799 * 194.17270 * 23 22 21 40 40 H 1.08994 * 109.61514 * 314.71133 * 23 22 21 41 41 H 1.09004 * 109.27120 * 285.89182 * 24 17 2 42 42 H 1.09001 * 109.26663 * 45.35803 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8677 -1.6988 -3.4701 8 7 2.7283 0.1204 -4.7325 9 6 3.1871 -0.5570 -5.8326 10 1 3.4360 -1.6051 -5.7564 11 6 3.3319 0.1050 -7.0456 12 7 3.0238 1.3790 -7.1397 13 14 3.9578 -0.8177 -8.5444 14 1 4.0149 0.1057 -9.7060 15 1 5.3166 -1.3488 -8.2669 16 1 3.0395 -1.9435 -8.8517 17 6 2.0399 -0.7213 1.2492 18 6 0.9836 -1.4320 2.0853 19 6 1.6169 -0.1231 2.5817 20 1 0.9814 0.7621 2.5523 21 6 2.5220 -0.2387 3.8062 22 6 3.9652 -0.4954 3.3720 23 6 3.9892 -1.7277 2.4603 24 6 3.4163 -1.3506 1.1005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9172 -1.1206 -1.0286 29 1 2.7589 1.0461 -2.1182 30 1 1.0871 0.6163 -2.5525 31 1 2.5044 1.0617 -4.8010 32 1 2.6992 1.8583 -6.3614 33 1 -0.0476 -1.3917 1.7347 34 1 1.2750 -2.3548 2.5869 35 1 2.4764 0.6881 4.3781 36 1 2.1807 -1.0638 4.4312 37 1 4.3431 0.3700 2.8275 38 1 4.5854 -0.6745 4.2503 39 1 5.0151 -2.0769 2.3440 40 1 3.3782 -2.5177 2.8968 41 1 3.3374 -2.2469 0.4852 42 1 4.0861 -0.6402 0.6159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708842480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:12 Heat of formation + Delta-G solvation = -45.971943 kcal Electronic energy + Delta-G solvation = -20563.805635 eV Core-core repulsion = 17542.827125 eV Total energy + Delta-G solvation = -3020.978511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35280 -40.24195 -37.13203 -36.25891 -34.34991 -33.15784 -31.78303 -30.55613 -28.17311 -26.32748 -25.19010 -24.07778 -22.60219 -21.53219 -21.02925 -19.98739 -18.96475 -18.44694 -17.21210 -16.87284 -16.59231 -15.74632 -15.52025 -15.41537 -15.29915 -14.85979 -14.84717 -14.50728 -14.28669 -13.54563 -13.49358 -13.34609 -13.11909 -12.85215 -12.73982 -12.56246 -12.38547 -11.97326 -11.92241 -11.90394 -11.78192 -11.59052 -11.53836 -11.08486 -10.63089 -10.46546 -10.38728 -10.13025 -9.35727 -8.94604 -6.08556 1.51407 1.53826 1.82353 1.98007 2.38630 2.64783 2.92135 3.14960 3.41982 3.56790 3.76139 3.86664 3.94166 4.09068 4.16721 4.23565 4.28288 4.32413 4.37020 4.45573 4.52191 4.59227 4.71119 4.75046 4.84840 4.91041 4.96458 5.04404 5.07737 5.18550 5.24466 5.30353 5.36325 5.38659 5.43467 5.50714 5.58017 5.93021 6.02956 6.35654 6.56141 6.72305 7.41802 7.89732 8.53056 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037171 B = 0.003614 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.091783 B = 7746.151220 C = 8063.701703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.678 5.678 5 C 0.064 3.936 6 C 0.442 3.558 7 O -0.617 6.617 8 N -0.586 5.586 9 C -0.412 4.412 10 H 0.073 0.927 11 C -0.041 4.041 12 N -0.916 5.916 13 Si 1.134 2.866 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.273 1.273 17 C -0.120 4.120 18 C -0.177 4.177 19 C -0.129 4.129 20 H 0.109 0.891 21 C -0.087 4.087 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.087 4.087 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.346 0.654 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.384 0.616 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 0.778 21.740 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 H 0.065 0.935 4 N -0.313 5.313 5 C -0.068 4.068 6 C 0.229 3.771 7 O -0.503 6.503 8 N -0.225 5.225 9 C -0.541 4.541 10 H 0.091 0.909 11 C -0.240 4.240 12 N -0.555 5.555 13 Si 0.954 3.046 14 H -0.196 1.196 15 H -0.197 1.197 16 H -0.199 1.199 17 C -0.120 4.120 18 C -0.213 4.213 19 C -0.148 4.148 20 H 0.127 0.873 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.125 4.125 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.167 0.833 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.219 0.781 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.377 -0.093 20.009 20.150 hybrid contribution 0.222 0.803 1.407 1.635 sum -2.154 0.710 21.416 21.536 Atomic orbital electron populations 1.21932 0.93795 1.02156 1.01711 1.21164 0.96200 0.94941 0.87024 0.93520 1.60230 1.35118 1.32325 1.03642 1.21589 1.02021 0.93804 0.89408 1.20837 0.83027 0.88006 0.85191 1.90491 1.56140 1.18165 1.85471 1.41989 1.59491 1.11945 1.09045 1.20541 1.45691 0.97293 0.90586 0.90894 1.27858 0.96174 0.96748 1.03186 1.70970 1.42652 1.09148 1.32733 0.82632 0.76730 0.73965 0.71317 1.19610 1.19726 1.19856 1.21059 0.95997 1.03646 0.91317 1.23460 0.98267 0.96321 1.03279 1.22418 1.01597 0.97306 0.93457 0.87282 1.21077 0.93663 1.02640 0.95037 1.21548 0.96982 0.97513 0.99395 1.21467 1.00859 0.98505 0.94529 1.20659 0.93867 0.99571 0.98367 0.90313 0.93401 0.92299 0.83283 0.91938 0.87986 0.78147 0.93018 0.87794 0.88850 0.90470 0.90972 0.92526 0.90563 0.91469 0.91552 0.92688 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 7.97 71.98 0.57 -2.56 16 2 C 0.12 2.94 2.84 44.91 0.13 3.07 16 3 H 0.05 1.15 7.80 -2.39 -0.02 1.13 16 4 N -0.68 -22.90 5.92 -495.60 -2.93 -25.83 16 5 C 0.06 2.32 5.97 85.56 0.51 2.83 16 6 C 0.44 21.81 7.82 87.66 0.69 22.50 16 7 O -0.62 -35.56 15.78 -3.08 -0.05 -35.61 16 8 N -0.59 -30.63 5.28 -306.98 -1.62 -32.26 16 9 C -0.41 -24.08 9.68 84.04 0.81 -23.26 16 10 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 11 C -0.04 -2.29 5.50 84.92 0.47 -1.82 16 12 N -0.92 -51.80 13.68 21.66 0.30 -51.50 16 13 Si 1.13 49.15 29.92 68.60 2.05 51.20 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 C -0.12 -2.64 2.45 -53.02 -0.13 -2.77 16 18 C -0.18 -3.39 8.64 30.58 0.26 -3.12 16 19 C -0.13 -2.20 5.50 -10.98 -0.06 -2.26 16 20 H 0.11 1.69 7.44 -2.39 -0.02 1.67 16 21 C -0.09 -1.22 5.83 30.46 0.18 -1.04 16 22 C -0.12 -1.80 5.93 30.66 0.18 -1.62 16 23 C -0.12 -2.13 5.67 30.46 0.17 -1.96 16 24 C -0.09 -2.04 4.00 30.06 0.12 -1.92 16 25 H 0.08 1.38 6.85 -2.39 -0.02 1.36 16 26 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 27 H 0.06 1.44 6.87 -2.39 -0.02 1.43 16 28 H 0.35 12.39 5.56 -89.69 -0.50 11.89 16 29 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 30 H 0.10 3.35 7.44 -2.39 -0.02 3.33 16 31 H 0.38 18.44 6.73 -92.71 -0.62 17.82 16 32 H 0.26 14.18 6.78 -92.71 -0.63 13.55 16 33 H 0.10 1.95 5.59 -2.39 -0.01 1.94 16 34 H 0.09 1.74 7.26 -2.39 -0.02 1.72 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 37 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.17 7.11 -2.39 -0.02 1.15 16 41 H 0.05 1.51 7.48 -2.39 -0.02 1.50 16 42 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 Total: -1.00 -69.08 323.70 1.69 -67.39 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 0.04 Total: 40.55 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.90 Total: -13.94 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.26 Total: -109.59 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Total: -69.08 1.69 -67.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708842480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.421 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds