Wall clock time and date at job start Mon Mar 30 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.36802 * 2 1 4 4 C 1.54381 * 110.32070 * 237.81492 * 2 1 3 5 5 N 1.48560 * 104.59416 * 217.25082 * 4 2 1 6 6 C 1.48562 * 104.22232 * 39.48913 * 5 4 2 7 7 C 1.54263 * 110.32201 * 122.18554 * 2 1 3 8 8 H 1.09003 * 110.32202 * 237.79056 * 7 2 1 9 9 C 1.53000 * 110.40875 * 359.95112 * 7 2 1 10 10 C 1.50704 * 109.47038 * 182.14545 * 9 7 2 11 11 O 1.21279 * 119.99796 * 5.66712 * 10 9 7 12 12 N 1.34776 * 120.00401 * 185.66659 * 10 9 7 13 13 C 1.46501 * 120.00342 * 185.10859 * 12 10 9 14 14 C 1.52998 * 109.47136 * 183.96066 * 13 12 10 15 15 C 1.50705 * 115.55012 * 64.89487 * 14 13 12 16 16 H 1.08000 * 119.99903 * 266.28954 * 15 14 13 17 17 C 1.37878 * 119.99930 * 86.28649 * 15 14 13 18 18 N 1.31507 * 120.00254 * 180.95600 * 17 15 14 19 19 Si 1.86800 * 119.99674 * 0.95907 * 17 15 14 20 20 H 1.48502 * 109.47297 * 84.90952 * 19 17 15 21 21 H 1.48504 * 109.46951 * 204.90420 * 19 17 15 22 22 H 1.48499 * 109.47411 * 324.90635 * 19 17 15 23 23 C 1.52998 * 117.49897 * 279.22944 * 14 13 12 24 24 C 1.52993 * 117.49843 * 210.56566 * 14 13 12 25 25 H 1.09001 * 109.47355 * 297.81823 * 1 2 3 26 26 H 1.08997 * 109.47094 * 57.81353 * 1 2 3 27 27 H 1.08996 * 109.47595 * 177.81774 * 1 2 3 28 28 H 1.09004 * 110.40617 * 98.47814 * 4 2 1 29 29 H 1.08992 * 110.41248 * 336.03536 * 4 2 1 30 30 H 1.00892 * 111.00214 * 279.93231 * 5 4 2 31 31 H 1.09003 * 110.40989 * 79.28883 * 6 5 4 32 32 H 1.08995 * 110.41340 * 201.73571 * 6 5 4 33 33 H 1.09006 * 109.47340 * 302.14095 * 9 7 2 34 34 H 1.09001 * 109.47240 * 62.14476 * 9 7 2 35 35 H 0.97009 * 119.99710 * 5.11333 * 12 10 9 36 36 H 1.08998 * 109.46818 * 303.96502 * 13 12 10 37 37 H 1.08998 * 109.46670 * 63.95904 * 13 12 10 38 38 H 0.96999 * 120.00316 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.50195 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.50275 * 145.02399 * 23 14 13 41 41 H 1.09006 * 117.49854 * 214.97560 * 24 14 13 42 42 H 1.09001 * 117.50393 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7711 -1.2253 5 7 3.2693 -1.4829 -0.7225 6 6 2.8806 -1.9423 0.6358 7 6 2.0658 -0.7706 1.2243 8 1 2.7082 -0.1269 1.8253 9 6 0.9064 -1.3013 2.0699 10 6 1.4522 -2.0040 3.2862 11 8 2.6433 -1.9852 3.5138 12 7 0.6168 -2.6533 4.1210 13 6 1.1305 -3.2406 5.3610 14 6 0.0063 -3.9979 6.0706 15 6 -0.5314 -5.1998 5.3375 16 1 -1.3948 -5.0997 4.6964 17 6 0.0790 -6.4273 5.4851 18 7 -0.3787 -7.4722 4.8308 19 14 1.5560 -6.6060 6.6146 20 1 1.0903 -6.8273 8.0073 21 1 2.3764 -7.7641 6.1772 22 1 2.3756 -5.3690 6.5574 23 6 -0.9813 -3.1785 6.9036 24 6 0.0548 -4.0656 7.5982 25 1 -0.3634 0.4796 0.9089 26 1 -0.3633 0.5474 -0.8697 27 1 -0.3634 -1.0268 -0.0391 28 1 2.3394 -0.0779 -2.0209 29 1 1.3228 -1.4848 -1.5803 30 1 4.0647 -0.8637 -0.6809 31 1 2.2646 -2.8393 0.5719 32 1 3.7669 -2.1310 1.2415 33 1 0.2749 -0.4699 2.3835 34 1 0.3170 -2.0025 1.4791 35 1 -0.3247 -2.7319 3.9008 36 1 1.9420 -3.9298 5.1276 37 1 1.5021 -2.4487 6.0113 38 1 0.0505 -8.3358 4.9349 39 1 -0.8300 -2.0999 6.9465 40 1 -2.0199 -3.5089 6.9218 41 1 -0.3026 -4.9794 8.0731 42 1 0.8879 -3.5711 8.0978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722533915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:29 Heat of formation + Delta-G solvation = -20.584375 kcal Electronic energy + Delta-G solvation = -20773.210443 eV Core-core repulsion = 17753.332820 eV Total energy + Delta-G solvation = -3019.877623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95869 -38.45977 -36.99642 -33.42964 -32.82365 -32.14517 -30.93087 -27.41383 -25.90401 -25.50106 -24.61162 -22.01682 -21.76906 -20.08894 -19.34242 -18.60754 -17.35667 -16.50541 -15.96935 -15.46787 -15.19958 -14.91514 -14.53283 -14.19647 -13.86396 -13.68992 -13.27722 -12.85288 -12.59675 -12.49284 -12.30633 -12.24064 -11.87107 -11.72190 -11.39303 -11.18509 -10.85575 -10.75809 -10.65628 -10.50992 -10.38959 -10.20562 -9.73287 -9.34557 -9.20535 -8.73581 -8.68233 -8.58146 -8.28428 -6.17218 -4.22048 3.12544 3.27991 3.38161 3.42360 3.72408 4.20172 4.38720 4.53481 4.65396 4.83166 4.88495 5.08076 5.11078 5.21528 5.30894 5.38746 5.43934 5.57686 5.59900 5.66613 5.68150 5.80090 5.88643 5.98218 5.99612 6.03907 6.06228 6.20937 6.22935 6.31887 6.38550 6.50714 6.63915 6.68005 6.97832 7.05142 7.13934 7.28553 7.65832 8.17041 8.39034 8.77937 8.82372 9.45866 10.94120 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.004749 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.036777 B = 5894.170556 C = 6208.046621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.072 0.928 4 C 0.043 3.957 5 N -0.672 5.672 6 C 0.049 3.951 7 C -0.101 4.101 8 H 0.080 0.920 9 C -0.131 4.131 10 C 0.503 3.497 11 O -0.557 6.557 12 N -0.703 5.703 13 C 0.155 3.845 14 C -0.016 4.016 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.081 3.919 18 N -0.895 5.895 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.259 1.259 23 C -0.178 4.178 24 C -0.195 4.195 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.334 0.666 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 14.817 -7.327 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 H 0.090 0.910 4 C -0.087 4.087 5 N -0.298 5.298 6 C -0.081 4.081 7 C -0.121 4.121 8 H 0.099 0.901 9 C -0.172 4.172 10 C 0.289 3.711 11 O -0.437 6.437 12 N -0.352 5.352 13 C 0.031 3.969 14 C -0.017 4.017 15 C -0.528 4.528 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.531 5.531 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.184 1.184 23 C -0.216 4.216 24 C -0.233 4.233 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.375 13.952 -7.570 16.050 hybrid contribution 0.225 0.527 1.206 1.336 sum 2.599 14.479 -6.364 16.028 Atomic orbital electron populations 1.21915 0.94444 1.02316 1.01622 1.22567 0.96898 0.99538 0.95632 0.90980 1.23130 0.93261 0.96231 0.96111 1.63295 1.05697 1.38947 1.21819 1.23085 1.00076 0.97096 0.87797 1.22268 0.96499 0.97887 0.95469 0.90145 1.21835 0.99203 1.00998 0.95132 1.20641 0.86792 0.79321 0.84323 1.90637 1.15725 1.62243 1.75063 1.45870 1.12387 1.54686 1.22300 1.21133 0.96753 0.94960 0.84009 1.19638 0.95168 0.97599 0.89295 1.20164 1.14860 0.89670 1.28070 0.90415 1.24956 0.96597 0.95595 0.95104 1.69874 1.41143 1.00445 1.41656 0.86868 0.83266 0.78011 0.81080 1.20232 1.22089 1.18391 1.22835 0.96202 0.95405 1.07127 1.22971 1.01293 1.01840 0.97167 0.92262 0.92865 0.91872 0.91247 0.90180 0.85150 0.90365 0.89945 0.88922 0.88780 0.76264 0.91566 0.94163 0.92436 0.90943 0.89399 0.89088 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.94 37.16 0.30 -0.92 16 2 C -0.13 -1.19 3.65 -89.23 -0.33 -1.52 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.04 0.42 7.01 -2.18 -0.02 0.40 16 5 N -0.67 -7.85 7.62 -109.66 -0.84 -8.69 16 6 C 0.05 0.66 6.10 -2.18 -0.01 0.65 16 7 C -0.10 -1.21 2.68 -89.24 -0.24 -1.45 16 8 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 9 C -0.13 -1.64 3.91 -27.88 -0.11 -1.74 16 10 C 0.50 8.64 7.54 -10.98 -0.08 8.56 16 11 O -0.56 -11.39 14.97 5.56 0.08 -11.31 16 12 N -0.70 -12.74 5.46 -60.30 -0.33 -13.07 16 13 C 0.16 3.24 5.21 -4.04 -0.02 3.22 16 14 C -0.02 -0.34 0.84 -155.66 -0.13 -0.48 16 15 C -0.49 -12.81 9.28 -34.44 -0.32 -13.13 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 19 Si 0.88 21.53 24.79 -169.99 -4.21 17.32 16 20 H -0.28 -6.57 7.04 56.52 0.40 -6.17 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.26 -6.17 5.93 56.52 0.34 -5.83 16 23 C -0.18 -3.36 9.96 -26.69 -0.27 -3.62 16 24 C -0.19 -3.97 7.61 -26.69 -0.20 -4.17 16 25 H 0.06 0.48 6.74 -51.93 -0.35 0.12 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.55 6.82 -51.93 -0.35 0.20 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.81 7.83 -51.93 -0.41 0.41 16 30 H 0.33 3.41 8.92 -39.30 -0.35 3.06 16 31 H 0.08 1.17 7.80 -51.93 -0.40 0.76 16 32 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 33 H 0.09 0.97 6.67 -51.93 -0.35 0.62 16 34 H 0.09 1.10 6.84 -51.93 -0.36 0.75 16 35 H 0.40 6.70 8.44 -40.82 -0.34 6.36 16 36 H 0.07 1.57 6.67 -51.93 -0.35 1.22 16 37 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 41 H 0.09 1.95 7.15 -51.93 -0.37 1.58 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -30.17 326.94 -8.15 -38.32 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.03 Total: 10.23 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.53 Total: -12.06 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.39 Total: -47.43 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.21 Total: 17.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.17 -8.15 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722533915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.740 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds