Wall clock time and date at job start Mon Mar 30 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.36802 * 2 1 4 4 C 1.54381 * 110.32070 * 237.81492 * 2 1 3 5 5 N 1.48560 * 104.59416 * 217.25082 * 4 2 1 6 6 C 1.48562 * 104.22232 * 39.48913 * 5 4 2 7 7 C 1.54263 * 110.32201 * 122.18554 * 2 1 3 8 8 H 1.09003 * 110.32202 * 237.79056 * 7 2 1 9 9 C 1.53000 * 110.40875 * 359.95112 * 7 2 1 10 10 C 1.50704 * 109.47038 * 182.14545 * 9 7 2 11 11 O 1.21279 * 119.99796 * 5.66712 * 10 9 7 12 12 N 1.34776 * 120.00401 * 185.66659 * 10 9 7 13 13 C 1.46501 * 120.00342 * 185.10859 * 12 10 9 14 14 C 1.52998 * 109.47136 * 183.96066 * 13 12 10 15 15 C 1.50705 * 115.55012 * 64.89487 * 14 13 12 16 16 H 1.08000 * 119.99903 * 266.28954 * 15 14 13 17 17 C 1.37878 * 119.99930 * 86.28649 * 15 14 13 18 18 N 1.31507 * 120.00254 * 180.95600 * 17 15 14 19 19 Si 1.86800 * 119.99674 * 0.95907 * 17 15 14 20 20 H 1.48502 * 109.47297 * 84.90952 * 19 17 15 21 21 H 1.48504 * 109.46951 * 204.90420 * 19 17 15 22 22 H 1.48499 * 109.47411 * 324.90635 * 19 17 15 23 23 C 1.52998 * 117.49897 * 279.22944 * 14 13 12 24 24 C 1.52993 * 117.49843 * 210.56566 * 14 13 12 25 25 H 1.09001 * 109.47355 * 297.81823 * 1 2 3 26 26 H 1.08997 * 109.47094 * 57.81353 * 1 2 3 27 27 H 1.08996 * 109.47595 * 177.81774 * 1 2 3 28 28 H 1.09004 * 110.40617 * 98.47814 * 4 2 1 29 29 H 1.08992 * 110.41248 * 336.03536 * 4 2 1 30 30 H 1.00892 * 111.00214 * 279.93231 * 5 4 2 31 31 H 1.09003 * 110.40989 * 79.28883 * 6 5 4 32 32 H 1.08995 * 110.41340 * 201.73571 * 6 5 4 33 33 H 1.09006 * 109.47340 * 302.14095 * 9 7 2 34 34 H 1.09001 * 109.47240 * 62.14476 * 9 7 2 35 35 H 0.97009 * 119.99710 * 5.11333 * 12 10 9 36 36 H 1.08998 * 109.46818 * 303.96502 * 13 12 10 37 37 H 1.08998 * 109.46670 * 63.95904 * 13 12 10 38 38 H 0.96999 * 120.00316 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.50195 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.50275 * 145.02399 * 23 14 13 41 41 H 1.09006 * 117.49854 * 214.97560 * 24 14 13 42 42 H 1.09001 * 117.50393 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7711 -1.2253 5 7 3.2693 -1.4829 -0.7225 6 6 2.8806 -1.9423 0.6358 7 6 2.0658 -0.7706 1.2243 8 1 2.7082 -0.1269 1.8253 9 6 0.9064 -1.3013 2.0699 10 6 1.4522 -2.0040 3.2862 11 8 2.6433 -1.9852 3.5138 12 7 0.6168 -2.6533 4.1210 13 6 1.1305 -3.2406 5.3610 14 6 0.0063 -3.9979 6.0706 15 6 -0.5314 -5.1998 5.3375 16 1 -1.3948 -5.0997 4.6964 17 6 0.0790 -6.4273 5.4851 18 7 -0.3787 -7.4722 4.8308 19 14 1.5560 -6.6060 6.6146 20 1 1.0903 -6.8273 8.0073 21 1 2.3764 -7.7641 6.1772 22 1 2.3756 -5.3690 6.5574 23 6 -0.9813 -3.1785 6.9036 24 6 0.0548 -4.0656 7.5982 25 1 -0.3634 0.4796 0.9089 26 1 -0.3633 0.5474 -0.8697 27 1 -0.3634 -1.0268 -0.0391 28 1 2.3394 -0.0779 -2.0209 29 1 1.3228 -1.4848 -1.5803 30 1 4.0647 -0.8637 -0.6809 31 1 2.2646 -2.8393 0.5719 32 1 3.7669 -2.1310 1.2415 33 1 0.2749 -0.4699 2.3835 34 1 0.3170 -2.0025 1.4791 35 1 -0.3247 -2.7319 3.9008 36 1 1.9420 -3.9298 5.1276 37 1 1.5021 -2.4487 6.0113 38 1 0.0505 -8.3358 4.9349 39 1 -0.8300 -2.0999 6.9465 40 1 -2.0199 -3.5089 6.9218 41 1 -0.3026 -4.9794 8.0731 42 1 0.8879 -3.5711 8.0978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722533915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:29 Heat of formation + Delta-G solvation = -43.075372 kcal Electronic energy + Delta-G solvation = -20774.185726 eV Core-core repulsion = 17753.332820 eV Total energy + Delta-G solvation = -3020.852906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14033 -39.68693 -38.59296 -34.95715 -34.22645 -33.75500 -31.85707 -28.84978 -27.63498 -26.37755 -25.98468 -23.36942 -22.95558 -21.43471 -21.04306 -19.65501 -18.65713 -18.16064 -17.21613 -16.98048 -16.63707 -16.47860 -15.52865 -15.45909 -15.07997 -14.89126 -14.77022 -14.57661 -14.16432 -13.83800 -13.58048 -13.11768 -13.07427 -12.96231 -12.74649 -12.62033 -12.29059 -12.17652 -12.01216 -11.67246 -11.58560 -11.53582 -11.25997 -11.00543 -10.85524 -10.65778 -10.30995 -9.85005 -9.63447 -8.31323 -6.37099 1.31760 1.37708 1.46435 1.76299 2.34117 2.36124 3.04374 3.23847 3.31493 3.63962 3.77833 3.95078 4.01739 4.10144 4.22397 4.35650 4.41366 4.47653 4.50901 4.51897 4.57479 4.65741 4.74078 4.79195 4.85761 4.87431 5.01333 5.07428 5.09237 5.12118 5.23449 5.31250 5.36143 5.47597 5.48742 5.62849 5.69223 5.73682 6.27180 6.43557 6.70072 6.77818 7.33340 7.39630 8.83294 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.004749 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.036777 B = 5894.170556 C = 6208.046621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.682 5.682 6 C 0.050 3.950 7 C -0.097 4.097 8 H 0.069 0.931 9 C -0.121 4.121 10 C 0.499 3.501 11 O -0.593 6.593 12 N -0.705 5.705 13 C 0.164 3.836 14 C -0.041 4.041 15 C -0.476 4.476 16 H 0.047 0.953 17 C 0.027 3.973 18 N -0.944 5.944 19 Si 0.928 3.072 20 H -0.261 1.261 21 H -0.304 1.304 22 H -0.249 1.249 23 C -0.148 4.148 24 C -0.196 4.196 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.342 0.658 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.410 0.590 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 17.605 -7.139 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.088 4.088 5 N -0.308 5.308 6 C -0.080 4.080 7 C -0.118 4.118 8 H 0.088 0.912 9 C -0.160 4.160 10 C 0.287 3.713 11 O -0.474 6.474 12 N -0.354 5.354 13 C 0.040 3.960 14 C -0.042 4.042 15 C -0.514 4.514 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.583 5.583 19 Si 0.754 3.246 20 H -0.186 1.186 21 H -0.232 1.232 22 H -0.172 1.172 23 C -0.185 4.185 24 C -0.234 4.234 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.246 0.754 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.975 16.774 -7.379 18.431 hybrid contribution 0.309 -0.309 1.084 1.169 sum 2.284 16.465 -6.295 17.774 Atomic orbital electron populations 1.21924 0.93277 1.02342 1.02780 1.22504 0.97765 0.99576 0.93657 0.89572 1.23210 0.92337 0.96415 0.96808 1.63248 1.06965 1.40028 1.20560 1.22910 0.98970 0.97290 0.88785 1.22228 0.96009 0.97222 0.96321 0.91246 1.21879 0.99609 1.01626 0.92934 1.21481 0.86215 0.78612 0.84986 1.90624 1.17371 1.63417 1.76004 1.45887 1.12917 1.54705 1.21912 1.20837 0.95314 0.94620 0.85253 1.19470 0.97278 0.97409 0.90085 1.20360 1.13150 0.91112 1.26796 0.93518 1.25678 0.99152 0.95632 0.96684 1.70003 1.43111 1.01033 1.44194 0.86073 0.80543 0.77856 0.80097 1.18640 1.23196 1.17230 1.22872 0.95397 0.96833 1.03408 1.23033 1.02722 1.02130 0.95526 0.91487 0.91362 0.92444 0.89115 0.90634 0.84213 0.92321 0.92496 0.85908 0.87783 0.75408 0.95080 0.92639 0.92720 0.87670 0.89498 0.90398 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.94 71.98 0.57 -1.38 16 2 C -0.11 -1.86 3.65 -9.90 -0.04 -1.89 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.04 0.73 7.01 86.45 0.61 1.33 16 5 N -0.68 -15.39 7.62 -500.86 -3.82 -19.21 16 6 C 0.05 1.38 6.10 86.45 0.53 1.90 16 7 C -0.10 -2.20 2.68 -9.90 -0.03 -2.23 16 8 H 0.07 1.75 7.92 -2.39 -0.02 1.73 16 9 C -0.12 -2.78 3.91 29.85 0.12 -2.67 16 10 C 0.50 16.74 7.54 87.66 0.66 17.40 16 11 O -0.59 -24.29 14.97 -3.03 -0.05 -24.34 16 12 N -0.70 -24.80 5.46 -463.07 -2.53 -27.33 16 13 C 0.16 6.68 5.21 86.38 0.45 7.13 16 14 C -0.04 -1.74 0.84 -52.93 -0.04 -1.79 16 15 C -0.48 -25.13 9.28 25.60 0.24 -24.89 16 16 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 17 C 0.03 1.50 5.47 84.66 0.46 1.97 16 18 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 19 Si 0.93 44.68 24.79 68.60 1.70 46.38 16 20 H -0.26 -11.84 7.04 99.48 0.70 -11.14 16 21 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 22 H -0.25 -11.43 5.93 99.48 0.59 -10.84 16 23 C -0.15 -5.10 9.96 30.62 0.30 -4.80 16 24 C -0.20 -7.47 7.61 30.62 0.23 -7.24 16 25 H 0.07 0.81 6.74 -2.39 -0.02 0.79 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.85 6.82 -2.39 -0.02 0.83 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.39 7.83 -2.39 -0.02 1.37 16 30 H 0.34 6.68 8.92 -89.70 -0.80 5.88 16 31 H 0.06 1.80 7.80 -2.39 -0.02 1.78 16 32 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 33 H 0.12 2.14 6.67 -2.38 -0.02 2.12 16 34 H 0.10 2.25 6.84 -2.39 -0.02 2.24 16 35 H 0.41 13.14 8.44 -92.70 -0.78 12.35 16 36 H 0.03 1.47 6.67 -2.39 -0.02 1.45 16 37 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 41 H 0.08 3.18 7.15 -2.38 -0.02 3.16 16 42 H 0.10 3.26 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -67.07 326.94 -1.01 -68.08 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.69 Total: 30.86 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 4.06 Total: -17.15 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -6.05 Total: -103.84 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.70 Total: 46.38 kcal Total: -67.07 -1.01 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722533915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.009 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds