Wall clock time and date at job start Mon Mar 30 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.53001 * 109.47020 * 239.99907 * 2 1 3 5 5 N 1.46498 * 109.46790 * 185.00046 * 4 2 1 6 6 C 1.34780 * 119.99828 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99690 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47182 * 60.00920 * 8 6 5 10 10 C 1.53010 * 117.49631 * 248.74148 * 9 8 6 11 11 C 1.53001 * 117.49958 * 180.08432 * 9 8 6 12 12 C 1.53005 * 109.46958 * 180.02562 * 8 6 5 13 13 C 1.52997 * 117.49912 * 128.74851 * 12 8 6 14 14 C 1.52998 * 117.49810 * 60.08656 * 12 8 6 15 15 N 1.46504 * 109.46802 * 120.00176 * 2 1 3 16 16 C 1.36943 * 119.99781 * 274.99978 * 15 2 1 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 2 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47059 * 300.00064 * 1 2 3 26 26 H 1.08998 * 109.46686 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47177 * 305.00067 * 4 2 1 28 28 H 1.09000 * 109.46849 * 65.00207 * 4 2 1 29 29 H 0.97002 * 120.00179 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.47452 * 300.00365 * 8 6 5 31 31 H 1.08996 * 115.55201 * 34.41072 * 9 8 6 32 32 H 1.08991 * 117.49954 * 0.02562 * 10 9 8 33 33 H 1.08998 * 117.49350 * 145.02099 * 10 9 8 34 34 H 1.09004 * 117.49800 * 214.97626 * 11 9 8 35 35 H 1.09000 * 117.50301 * 359.97438 * 11 9 8 36 36 H 1.08999 * 115.55197 * 274.42056 * 12 8 6 37 37 H 1.08997 * 117.49897 * 0.02562 * 13 12 8 38 38 H 1.09002 * 117.49718 * 145.02538 * 13 12 8 39 39 H 1.09003 * 117.49947 * 214.98026 * 14 12 8 40 40 H 1.08996 * 117.49851 * 0.02562 * 14 12 8 41 41 H 0.97000 * 120.00410 * 95.00304 * 15 2 1 42 42 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1730 -1.4292 -2.1906 7 8 3.5699 -1.8842 -3.1394 8 6 5.6750 -1.5368 -2.1305 9 6 6.0802 -2.3262 -0.8841 10 6 6.7918 -1.5630 0.2350 11 6 7.5750 -2.5442 -0.6409 12 6 6.1850 -2.2582 -3.3796 13 6 7.3049 -1.5856 -4.1761 14 6 5.8811 -1.6210 -4.7370 15 7 2.0183 -0.6907 1.1962 16 6 2.1491 -0.0075 2.3758 17 1 1.8926 1.0405 2.4242 18 6 2.6172 -0.6605 3.5078 19 7 2.9302 -1.9375 3.4487 20 14 2.8029 0.2732 5.1150 21 1 2.3878 1.6854 4.9178 22 1 1.9471 -0.3543 6.1537 23 1 4.2219 0.2312 5.5508 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 3.9824 -0.4628 -0.4315 30 1 6.1093 -0.5381 -2.0852 31 1 5.4010 -3.1276 -0.5937 32 1 6.9709 -0.4987 0.0834 33 1 6.5810 -1.8628 1.2615 34 1 7.8790 -3.4889 -0.1902 35 1 8.2697 -2.1256 -1.3691 36 1 6.1904 -3.3468 -3.3247 37 1 7.6786 -0.6294 -3.8099 38 1 8.0468 -2.2318 -4.6454 39 1 5.6868 -2.2904 -5.5751 40 1 5.3181 -0.6877 -4.7400 41 1 2.2491 -1.6318 1.1527 42 1 3.2570 -2.3939 4.2398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001774043871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:34 Heat of formation + Delta-G solvation = 11.744823 kcal Electronic energy + Delta-G solvation = -20819.469019 eV Core-core repulsion = 17800.993295 eV Total energy + Delta-G solvation = -3018.475724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91573 -37.57930 -36.32396 -35.90082 -33.41473 -31.84078 -29.48711 -28.58741 -25.55280 -23.65274 -22.47557 -22.16705 -21.24336 -20.96866 -20.14190 -19.30895 -17.46673 -16.73656 -15.96827 -15.55613 -15.14316 -14.68577 -14.55476 -13.98752 -13.87650 -13.42313 -13.29591 -12.87007 -12.21156 -12.10410 -12.00478 -11.67631 -11.47232 -11.37568 -11.30192 -11.29226 -10.90657 -10.75960 -10.41203 -10.34233 -10.27874 -10.18988 -9.99358 -9.73024 -9.69725 -9.20588 -8.98814 -8.52288 -7.04286 -5.82391 -3.12224 3.02410 3.38295 3.45025 3.46704 3.52577 3.90026 4.07833 4.53479 4.67867 4.78990 4.93823 5.07754 5.12273 5.21374 5.37896 5.43496 5.49572 5.51786 5.55519 5.60055 5.66065 5.80113 5.88584 5.96332 5.98562 6.10497 6.13062 6.16295 6.19530 6.25769 6.35683 6.36381 6.41813 6.57215 6.76192 6.90069 7.07553 7.65417 8.05344 8.34941 8.68893 9.47180 10.02417 10.38431 11.39476 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.005641 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.238829 B = 4962.176232 C = 6137.850922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.052 0.948 4 C 0.115 3.885 5 N -0.711 5.711 6 C 0.516 3.484 7 O -0.548 6.548 8 C -0.044 4.044 9 C -0.144 4.144 10 C -0.169 4.169 11 C -0.174 4.174 12 C -0.122 4.122 13 C -0.187 4.187 14 C -0.157 4.157 15 N -0.722 5.722 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.410 0.590 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.385 0.615 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 1.493 -11.581 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.009 4.009 5 N -0.362 5.362 6 C 0.302 3.698 7 O -0.426 6.426 8 C -0.065 4.065 9 C -0.162 4.162 10 C -0.206 4.206 11 C -0.211 4.211 12 C -0.141 4.141 13 C -0.224 4.224 14 C -0.194 4.194 15 N -0.365 5.365 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.219 0.781 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.251 1.309 -12.106 14.172 hybrid contribution 0.259 0.263 1.463 1.509 sum 7.510 1.573 -10.643 13.120 Atomic orbital electron populations 1.22361 0.98390 1.01230 1.00299 1.20508 0.92622 0.95700 0.86275 0.92997 1.21655 0.79901 1.00947 0.98440 1.45996 1.07993 1.58788 1.23445 1.20407 0.89380 0.77734 0.82327 1.90650 1.70159 1.48119 1.33695 1.20469 0.92600 0.99561 0.93898 1.22030 0.95743 1.02775 0.95691 1.23079 1.03170 0.97575 0.96791 1.22911 0.93589 1.01338 1.03225 1.21808 1.02198 0.99044 0.91034 1.23091 0.92176 1.02253 1.04846 1.22769 0.96989 1.02824 0.96800 1.42462 1.78030 1.10819 1.05178 1.19260 1.36612 0.93906 0.87408 0.91153 1.24708 1.02034 0.95895 0.97909 1.69671 1.50596 1.08606 1.28800 0.86180 0.77293 0.78846 0.84211 1.20616 1.21945 1.21899 0.93238 0.92373 0.94254 0.92008 0.92067 0.75315 0.89061 0.87277 0.88890 0.87853 0.88949 0.88859 0.87587 0.89144 0.88990 0.89041 0.89118 0.78068 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.47 16 2 C 0.16 2.99 3.05 -67.93 -0.21 2.78 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C 0.12 1.99 5.23 -4.04 -0.02 1.97 16 5 N -0.71 -12.00 5.29 -60.30 -0.32 -12.31 16 6 C 0.52 8.58 7.01 -10.98 -0.08 8.51 16 7 O -0.55 -10.55 15.09 5.56 0.08 -10.47 16 8 C -0.04 -0.59 2.50 -91.77 -0.23 -0.82 16 9 C -0.14 -1.96 4.93 -90.62 -0.45 -2.41 16 10 C -0.17 -2.26 10.18 -26.69 -0.27 -2.53 16 11 C -0.17 -2.02 9.88 -26.69 -0.26 -2.28 16 12 C -0.12 -1.54 4.38 -90.62 -0.40 -1.93 16 13 C -0.19 -1.92 10.18 -26.69 -0.27 -2.19 16 14 C -0.16 -1.91 8.98 -26.69 -0.24 -2.15 16 15 N -0.72 -16.78 4.56 -53.42 -0.24 -17.03 16 16 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 20 Si 0.90 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 7.10 8.03 -40.82 -0.33 6.77 16 30 H 0.09 1.13 7.66 -51.93 -0.40 0.73 16 31 H 0.11 1.70 8.11 -51.93 -0.42 1.28 16 32 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.39 9.74 7.80 -40.82 -0.32 9.42 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -28.76 349.68 -9.16 -37.92 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -7.34 Total: 16.32 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.32 Total: -10.28 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.16 Total: -55.24 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.76 -9.16 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774043871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.670 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds