Wall clock time and date at job start Mon Mar 30 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.53001 * 109.47020 * 239.99907 * 2 1 3 5 5 N 1.46498 * 109.46790 * 185.00046 * 4 2 1 6 6 C 1.34780 * 119.99828 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99690 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47182 * 60.00920 * 8 6 5 10 10 C 1.53010 * 117.49631 * 248.74148 * 9 8 6 11 11 C 1.53001 * 117.49958 * 180.08432 * 9 8 6 12 12 C 1.53005 * 109.46958 * 180.02562 * 8 6 5 13 13 C 1.52997 * 117.49912 * 128.74851 * 12 8 6 14 14 C 1.52998 * 117.49810 * 60.08656 * 12 8 6 15 15 N 1.46504 * 109.46802 * 120.00176 * 2 1 3 16 16 C 1.36943 * 119.99781 * 274.99978 * 15 2 1 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 2 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47059 * 300.00064 * 1 2 3 26 26 H 1.08998 * 109.46686 * 59.99845 * 1 2 3 27 27 H 1.08998 * 109.47177 * 305.00067 * 4 2 1 28 28 H 1.09000 * 109.46849 * 65.00207 * 4 2 1 29 29 H 0.97002 * 120.00179 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.47452 * 300.00365 * 8 6 5 31 31 H 1.08996 * 115.55201 * 34.41072 * 9 8 6 32 32 H 1.08991 * 117.49954 * 0.02562 * 10 9 8 33 33 H 1.08998 * 117.49350 * 145.02099 * 10 9 8 34 34 H 1.09004 * 117.49800 * 214.97626 * 11 9 8 35 35 H 1.09000 * 117.50301 * 359.97438 * 11 9 8 36 36 H 1.08999 * 115.55197 * 274.42056 * 12 8 6 37 37 H 1.08997 * 117.49897 * 0.02562 * 13 12 8 38 38 H 1.09002 * 117.49718 * 145.02538 * 13 12 8 39 39 H 1.09003 * 117.49947 * 214.98026 * 14 12 8 40 40 H 1.08996 * 117.49851 * 0.02562 * 14 12 8 41 41 H 0.97000 * 120.00410 * 95.00304 * 15 2 1 42 42 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1730 -1.4292 -2.1906 7 8 3.5699 -1.8842 -3.1394 8 6 5.6750 -1.5368 -2.1305 9 6 6.0802 -2.3262 -0.8841 10 6 6.7918 -1.5630 0.2350 11 6 7.5750 -2.5442 -0.6409 12 6 6.1850 -2.2582 -3.3796 13 6 7.3049 -1.5856 -4.1761 14 6 5.8811 -1.6210 -4.7370 15 7 2.0183 -0.6907 1.1962 16 6 2.1491 -0.0075 2.3758 17 1 1.8926 1.0405 2.4242 18 6 2.6172 -0.6605 3.5078 19 7 2.9302 -1.9375 3.4487 20 14 2.8029 0.2732 5.1150 21 1 2.3878 1.6854 4.9178 22 1 1.9471 -0.3543 6.1537 23 1 4.2219 0.2312 5.5508 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 3.9824 -0.4628 -0.4315 30 1 6.1093 -0.5381 -2.0852 31 1 5.4010 -3.1276 -0.5937 32 1 6.9709 -0.4987 0.0834 33 1 6.5810 -1.8628 1.2615 34 1 7.8790 -3.4889 -0.1902 35 1 8.2697 -2.1256 -1.3691 36 1 6.1904 -3.3468 -3.3247 37 1 7.6786 -0.6294 -3.8099 38 1 8.0468 -2.2318 -4.6454 39 1 5.6868 -2.2904 -5.5751 40 1 5.3181 -0.6877 -4.7400 41 1 2.2491 -1.6318 1.1527 42 1 3.2570 -2.3939 4.2398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001774043871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:33 Heat of formation + Delta-G solvation = -4.757522 kcal Electronic energy + Delta-G solvation = -20820.184614 eV Core-core repulsion = 17800.993295 eV Total energy + Delta-G solvation = -3019.191319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16308 -38.78730 -37.76712 -37.00158 -35.07996 -33.57506 -30.87213 -30.15863 -26.96005 -25.59244 -23.46085 -23.07169 -22.30154 -22.15061 -21.69312 -20.51759 -19.33395 -18.10161 -17.19573 -16.92964 -16.58887 -16.06913 -15.90938 -15.45498 -15.16192 -14.88305 -14.54190 -14.33121 -13.80797 -13.64446 -13.40754 -13.06986 -12.81643 -12.65644 -12.47966 -12.44551 -12.33882 -12.25754 -12.12500 -11.70092 -11.64010 -11.53468 -11.25914 -11.15917 -10.97720 -10.69182 -10.44664 -9.93762 -9.00011 -7.89302 -5.18076 1.49441 1.51384 1.59618 1.69821 2.29687 2.58853 2.86892 3.07622 3.45166 3.62242 3.77149 3.87800 3.91921 4.01061 4.09670 4.16331 4.19715 4.34495 4.40579 4.43705 4.51319 4.64604 4.74374 4.82516 4.84942 4.86524 4.93178 5.06355 5.08463 5.11086 5.22523 5.25896 5.32206 5.33102 5.37066 5.45125 5.58206 5.64200 6.30821 6.67611 7.33267 7.38636 8.10554 8.35764 9.33373 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.005641 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.238829 B = 4962.176232 C = 6137.850922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.059 0.941 4 C 0.123 3.877 5 N -0.711 5.711 6 C 0.512 3.488 7 O -0.576 6.576 8 C -0.032 4.032 9 C -0.155 4.155 10 C -0.178 4.178 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.156 4.156 14 C -0.170 4.170 15 N -0.730 5.730 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.067 4.067 19 N -0.964 5.964 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.301 1.301 23 H -0.295 1.295 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.409 0.591 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.372 0.628 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 2.912 -12.553 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.077 0.923 4 C -0.001 4.001 5 N -0.362 5.362 6 C 0.299 3.701 7 O -0.457 6.457 8 C -0.053 4.053 9 C -0.174 4.174 10 C -0.215 4.215 11 C -0.183 4.183 12 C -0.158 4.158 13 C -0.193 4.193 14 C -0.207 4.207 15 N -0.371 5.371 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.259 4.259 19 N -0.615 5.615 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.229 1.229 23 H -0.222 1.222 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.245 0.755 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.204 0.796 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.436 2.770 -13.103 15.828 hybrid contribution -0.178 -0.170 1.691 1.709 sum 8.257 2.600 -11.412 14.324 Atomic orbital electron populations 1.22237 0.96880 1.01059 1.01330 1.20675 0.93535 0.95588 0.85145 0.92326 1.21532 0.80268 1.00088 0.98247 1.46028 1.07825 1.58857 1.23500 1.21026 0.90825 0.76711 0.81522 1.90631 1.71100 1.49195 1.34726 1.20406 0.90058 1.00527 0.94297 1.21879 0.96987 1.02464 0.96033 1.23045 1.04241 0.98698 0.95503 1.23000 0.92185 1.00924 1.02197 1.21792 1.04565 0.98725 0.90742 1.23183 0.91212 1.02610 1.02247 1.22767 0.98964 1.02339 0.96619 1.42579 1.78278 1.10254 1.05958 1.19584 1.34558 0.94142 0.88155 0.90537 1.25384 1.03042 0.96641 1.00857 1.69818 1.52483 1.10085 1.29100 0.85223 0.76618 0.78283 0.80500 1.19167 1.22888 1.22223 0.94040 0.93615 0.90883 0.93568 0.90339 0.75508 0.87327 0.90119 0.87557 0.90376 0.88424 0.86507 0.88361 0.87745 0.87081 0.88922 0.90312 0.79581 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.49 71.98 0.68 -4.49 16 2 C 0.16 5.84 3.05 44.99 0.14 5.98 16 3 H 0.06 2.10 8.08 -2.39 -0.02 2.09 16 4 C 0.12 4.21 5.23 86.38 0.45 4.66 16 5 N -0.71 -23.94 5.29 -463.07 -2.45 -26.39 16 6 C 0.51 16.96 7.01 87.66 0.61 17.57 16 7 O -0.58 -22.26 15.09 -3.02 -0.05 -22.31 16 8 C -0.03 -0.83 2.50 -11.54 -0.03 -0.86 16 9 C -0.15 -4.18 4.93 -10.79 -0.05 -4.24 16 10 C -0.18 -4.65 10.18 30.62 0.31 -4.34 16 11 C -0.15 -3.12 9.88 30.62 0.30 -2.82 16 12 C -0.14 -3.30 4.38 -10.79 -0.05 -3.34 16 13 C -0.16 -2.70 10.18 30.62 0.31 -2.39 16 14 C -0.17 -3.90 8.98 30.62 0.27 -3.62 16 15 N -0.73 -34.02 4.56 -322.92 -1.47 -35.49 16 16 C -0.23 -12.00 9.93 84.03 0.83 -11.17 16 17 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.96 -56.46 13.06 21.65 0.28 -56.17 16 20 Si 0.96 44.35 29.55 68.60 2.03 46.38 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.41 14.13 8.03 -92.71 -0.74 13.39 16 30 H 0.11 2.44 7.66 -2.39 -0.02 2.42 16 31 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 32 H 0.11 2.46 8.05 -2.39 -0.02 2.44 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 2.46 8.11 -2.39 -0.02 2.44 16 37 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 41 H 0.37 19.26 7.80 -92.71 -0.72 18.54 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -61.85 349.68 2.13 -59.72 By element: Atomic # 1 Polarization: 46.93 SS G_CDS: -0.47 Total: 46.46 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 4.26 Total: -12.20 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -3.64 Total: -118.06 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.85 2.13 -59.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774043871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.963 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds