Wall clock time and date at job start Mon Mar 30 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47185 * 120.00431 * 8 6 4 11 11 H 1.48507 * 109.47178 * 240.00326 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 H 1.09001 * 109.97324 * 40.17422 * 14 12 2 16 16 C 1.54999 * 109.98362 * 278.86199 * 14 12 2 17 17 C 1.52951 * 103.95662 * 243.04900 * 16 14 12 18 18 H 1.09005 * 110.89082 * 89.74262 * 17 16 14 19 19 C 1.51457 * 116.45137 * 216.16547 * 17 16 14 20 20 C 1.53734 * 107.70790 * 176.93947 * 19 17 16 21 21 C 1.52570 * 111.47694 * 302.49675 * 20 19 17 22 22 C 1.53750 * 111.44383 * 54.74307 * 21 20 19 23 23 C 1.51606 * 107.30432 * 302.41873 * 22 21 20 24 24 H 1.09006 * 109.87739 * 304.60155 * 23 22 21 25 25 N 1.46652 * 116.84520 * 178.54846 * 23 22 21 26 26 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 27 27 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 28 28 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 29 29 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 30 30 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 31 31 H 0.96998 * 120.00151 * 180.02562 * 7 6 4 32 32 H 1.08999 * 110.53248 * 1.67217 * 16 14 12 33 33 H 1.09001 * 110.53335 * 124.43331 * 16 14 12 34 34 H 1.09001 * 109.45697 * 57.49257 * 19 17 16 35 35 H 1.09005 * 109.96330 * 296.68240 * 19 17 16 36 36 H 1.09001 * 109.08189 * 181.98441 * 20 19 17 37 37 H 1.09002 * 109.07911 * 63.01040 * 20 19 17 38 38 H 1.08995 * 109.08851 * 294.23649 * 21 20 19 39 39 H 1.09005 * 109.03172 * 175.21508 * 21 20 19 40 40 H 1.09005 * 109.88751 * 182.96572 * 22 21 20 41 41 H 1.09002 * 109.95911 * 61.90604 * 22 21 20 42 42 H 1.00901 * 111.00125 * 319.05517 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.5507 3.6195 -0.6731 8 14 3.4226 3.4256 -3.4338 9 1 2.8418 2.4273 -4.3672 10 1 2.7838 4.7468 -3.6610 11 1 4.8842 3.5348 -3.6734 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 1 0.5185 -2.4018 -0.6628 16 6 0.9320 -2.8223 1.4347 17 6 1.6707 -4.1245 1.7478 18 1 2.6421 -3.9216 2.1989 19 6 0.9211 -5.1414 2.5832 20 6 1.8097 -6.3896 2.7090 21 6 2.1758 -6.9549 1.3400 22 6 2.8285 -5.8870 0.4471 23 6 1.8485 -4.7360 0.3309 24 1 0.8903 -5.1010 -0.0389 25 7 2.2790 -3.5768 -0.4575 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8874 -0.5181 29 1 1.6106 2.0271 0.5181 30 1 3.1521 1.1371 0.5096 31 1 4.0262 4.4462 -0.8503 32 1 1.2290 -2.0375 2.1303 33 1 -0.1464 -2.9769 1.4692 34 1 -0.0142 -5.4004 2.0869 35 1 0.7150 -4.7315 3.5720 36 1 1.2760 -7.1511 3.2778 37 1 2.7234 -6.1243 3.2409 38 1 1.2727 -7.3230 0.8533 39 1 2.8720 -7.7832 1.4721 40 1 3.0313 -6.3025 -0.5400 41 1 3.7567 -5.5394 0.9007 42 1 3.2467 -3.3558 -0.2768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:23 Heat of formation + Delta-G solvation = -47.604584 kcal Electronic energy + Delta-G solvation = -21048.044432 eV Core-core repulsion = 18026.995124 eV Total energy + Delta-G solvation = -3021.049307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49430 -38.51682 -35.24812 -34.75913 -32.61025 -31.91139 -29.31806 -28.32322 -27.44526 -25.79119 -23.93048 -22.24288 -21.50970 -20.93437 -20.24305 -18.30564 -16.70643 -16.43882 -15.71292 -15.31831 -14.99671 -14.67749 -14.52410 -14.36461 -14.01897 -13.43063 -13.27820 -12.93931 -12.63745 -12.26830 -12.17357 -11.98237 -11.84713 -11.66502 -11.52415 -11.18139 -11.15796 -10.88628 -10.84930 -10.65834 -10.57398 -10.50431 -10.14827 -10.11293 -9.59795 -8.90204 -8.45371 -8.42428 -7.65699 -6.03585 -4.08104 3.30937 3.31578 3.39128 3.44715 3.87385 4.16464 4.46250 4.51593 4.57788 4.76838 4.94805 4.98960 5.09193 5.14046 5.20104 5.31090 5.36908 5.38339 5.41891 5.53041 5.65849 5.71722 5.79355 5.82828 5.88747 5.93279 5.95275 5.97812 6.05973 6.10216 6.18962 6.23930 6.34399 6.80682 7.06801 7.42567 7.51431 7.58247 7.93000 8.23988 8.39736 8.90077 9.06521 9.57086 11.04608 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037875 B = 0.004227 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.106007 B = 6622.168819 C = 6910.613981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.541 6.541 14 C 0.050 3.950 15 H 0.104 0.896 16 C -0.127 4.127 17 C -0.131 4.131 18 H 0.075 0.925 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.113 4.113 23 C 0.070 3.930 24 H 0.084 0.916 25 N -0.646 5.646 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -18.249 6.328 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.329 5.329 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.419 6.419 14 C -0.063 4.063 15 H 0.121 0.879 16 C -0.166 4.166 17 C -0.151 4.151 18 H 0.093 0.907 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.040 4.040 24 H 0.102 0.898 25 N -0.277 5.277 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.681 -18.200 5.696 20.559 hybrid contribution 0.416 0.758 -0.047 0.866 sum -7.265 -17.442 5.649 19.721 Atomic orbital electron populations 1.21691 0.81401 1.02717 1.00429 1.48101 1.06221 1.07711 1.70875 1.19307 0.92518 0.78040 0.97599 1.21480 1.36408 1.06205 0.92307 0.92336 1.24943 0.95321 0.96392 0.97498 1.69945 1.38461 1.14387 1.30690 0.86428 0.78081 0.78282 0.84566 1.19739 1.20971 1.20865 1.20294 0.88079 0.85237 0.77309 1.90638 1.13878 1.86790 1.50556 1.22886 0.96924 0.90678 0.95821 0.87876 1.22438 1.00668 0.97425 0.96090 1.22464 1.00119 0.94531 0.98018 0.90658 1.21288 0.98315 0.94758 0.99748 1.21548 0.99797 0.97194 0.97139 1.21488 1.00584 0.97739 0.95422 1.21431 0.98170 0.95303 1.00150 1.22373 0.99281 0.91907 0.90483 0.89781 1.63051 1.08858 1.02014 1.53795 0.93685 0.90685 0.92260 0.94973 0.93899 0.92789 0.90954 0.90531 0.91741 0.91938 0.92073 0.92179 0.92010 0.91918 0.91055 0.91668 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.11 59.84 0.61 1.91 16 2 N -0.60 -12.84 2.86 -182.96 -0.52 -13.37 16 3 C 0.24 6.49 5.16 -5.20 -0.03 6.47 16 4 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.51 10.71 6.74 -10.98 -0.07 10.63 16 13 O -0.54 -13.76 15.21 5.56 0.08 -13.67 16 14 C 0.05 0.80 3.03 -66.59 -0.20 0.59 16 15 H 0.10 1.52 6.34 -51.93 -0.33 1.19 16 16 C -0.13 -1.63 6.06 -25.70 -0.16 -1.78 16 17 C -0.13 -1.53 2.54 -90.18 -0.23 -1.75 16 18 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 19 C -0.10 -0.94 5.61 -27.13 -0.15 -1.09 16 20 C -0.12 -0.98 5.86 -26.57 -0.16 -1.13 16 21 C -0.11 -0.94 5.85 -26.56 -0.16 -1.10 16 22 C -0.11 -1.16 5.87 -27.05 -0.16 -1.32 16 23 C 0.07 0.84 2.65 -67.31 -0.18 0.67 16 24 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 25 N -0.65 -10.14 7.33 -97.89 -0.72 -10.86 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.06 0.79 5.96 -51.93 -0.31 0.48 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 33 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.35 6.20 7.30 -39.29 -0.29 5.92 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -32.51 328.13 -8.94 -41.45 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.15 Total: 2.24 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.30 Total: -1.75 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.50 Total: -50.40 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.51 -8.94 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds