Wall clock time and date at job start Mon Mar 30 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00268 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47185 * 120.00431 * 8 6 4 11 11 H 1.48507 * 109.47178 * 240.00326 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 H 1.09001 * 109.97324 * 40.17422 * 14 12 2 16 16 C 1.54999 * 109.98362 * 278.86199 * 14 12 2 17 17 C 1.52951 * 103.95662 * 243.04900 * 16 14 12 18 18 H 1.09005 * 110.89082 * 89.74262 * 17 16 14 19 19 C 1.51457 * 116.45137 * 216.16547 * 17 16 14 20 20 C 1.53734 * 107.70790 * 176.93947 * 19 17 16 21 21 C 1.52570 * 111.47694 * 302.49675 * 20 19 17 22 22 C 1.53750 * 111.44383 * 54.74307 * 21 20 19 23 23 C 1.51606 * 107.30432 * 302.41873 * 22 21 20 24 24 H 1.09006 * 109.87739 * 304.60155 * 23 22 21 25 25 N 1.46652 * 116.84520 * 178.54846 * 23 22 21 26 26 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 27 27 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 28 28 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 29 29 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 30 30 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 31 31 H 0.96998 * 120.00151 * 180.02562 * 7 6 4 32 32 H 1.08999 * 110.53248 * 1.67217 * 16 14 12 33 33 H 1.09001 * 110.53335 * 124.43331 * 16 14 12 34 34 H 1.09001 * 109.45697 * 57.49257 * 19 17 16 35 35 H 1.09005 * 109.96330 * 296.68240 * 19 17 16 36 36 H 1.09001 * 109.08189 * 181.98441 * 20 19 17 37 37 H 1.09002 * 109.07911 * 63.01040 * 20 19 17 38 38 H 1.08995 * 109.08851 * 294.23649 * 21 20 19 39 39 H 1.09005 * 109.03172 * 175.21508 * 21 20 19 40 40 H 1.09005 * 109.88751 * 182.96572 * 22 21 20 41 41 H 1.09002 * 109.95911 * 61.90604 * 22 21 20 42 42 H 1.00901 * 111.00125 * 319.05517 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.5507 3.6195 -0.6731 8 14 3.4226 3.4256 -3.4338 9 1 2.8418 2.4273 -4.3672 10 1 2.7838 4.7468 -3.6610 11 1 4.8842 3.5348 -3.6734 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 1 0.5185 -2.4018 -0.6628 16 6 0.9320 -2.8223 1.4347 17 6 1.6707 -4.1245 1.7478 18 1 2.6421 -3.9216 2.1989 19 6 0.9211 -5.1414 2.5832 20 6 1.8097 -6.3896 2.7090 21 6 2.1758 -6.9549 1.3400 22 6 2.8285 -5.8870 0.4471 23 6 1.8485 -4.7360 0.3309 24 1 0.8903 -5.1010 -0.0389 25 7 2.2790 -3.5768 -0.4575 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8874 -0.5181 29 1 1.6106 2.0271 0.5181 30 1 3.1521 1.1371 0.5096 31 1 4.0262 4.4462 -0.8503 32 1 1.2290 -2.0375 2.1303 33 1 -0.1464 -2.9769 1.4692 34 1 -0.0142 -5.4004 2.0869 35 1 0.7150 -4.7315 3.5720 36 1 1.2760 -7.1511 3.2778 37 1 2.7234 -6.1243 3.2409 38 1 1.2727 -7.3230 0.8533 39 1 2.8720 -7.7832 1.4721 40 1 3.0313 -6.3025 -0.5400 41 1 3.7567 -5.5394 0.9007 42 1 3.2467 -3.3558 -0.2768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:23 Heat of formation + Delta-G solvation = -70.065505 kcal Electronic energy + Delta-G solvation = -21049.018410 eV Core-core repulsion = 18026.995124 eV Total energy + Delta-G solvation = -3022.023286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69165 -39.93986 -36.72616 -36.10200 -34.73662 -32.82172 -30.71692 -29.47201 -28.89184 -27.35247 -25.56510 -23.66553 -22.44461 -21.93819 -21.15099 -19.82164 -18.73981 -18.05461 -17.36807 -16.53264 -16.44884 -16.04818 -15.54659 -15.46207 -15.25235 -14.75440 -14.51484 -14.21617 -13.95069 -13.81162 -13.52329 -13.42047 -13.15009 -12.87438 -12.80097 -12.76266 -12.63291 -12.37408 -12.24298 -12.00839 -11.75617 -11.69016 -11.41584 -11.33810 -10.97381 -10.67380 -10.59450 -9.60460 -9.46872 -8.25265 -6.40231 1.34767 1.37474 1.49520 1.71670 2.26230 2.40485 3.04284 3.07028 3.56261 3.63631 3.75778 3.81276 4.12812 4.20849 4.23598 4.29005 4.42554 4.47686 4.54821 4.61025 4.66126 4.69805 4.81791 4.87265 4.94845 4.96523 4.99658 5.06175 5.18152 5.18871 5.24496 5.28378 5.29735 5.42105 5.52302 5.53504 5.75804 5.81580 6.02829 6.25204 6.65973 6.73562 7.24020 7.40336 8.82142 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037875 B = 0.004227 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.106007 B = 6622.168819 C = 6910.613981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.604 5.604 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.495 3.505 13 O -0.597 6.597 14 C 0.061 3.939 15 H 0.124 0.876 16 C -0.120 4.120 17 C -0.126 4.126 18 H 0.050 0.950 19 C -0.098 4.098 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.112 4.112 23 C 0.070 3.930 24 H 0.100 0.900 25 N -0.661 5.661 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.026 0.974 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 -20.054 5.865 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.207 1.207 12 C 0.283 3.717 13 O -0.478 6.478 14 C -0.052 4.052 15 H 0.142 0.858 16 C -0.159 4.159 17 C -0.146 4.146 18 H 0.068 0.932 19 C -0.136 4.136 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.040 4.040 24 H 0.118 0.882 25 N -0.291 5.291 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.014 0.986 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.112 -20.027 5.246 23.040 hybrid contribution 1.176 1.316 0.134 1.770 sum -8.937 -18.710 5.380 21.422 Atomic orbital electron populations 1.22003 0.77747 1.04058 1.02788 1.48121 1.08499 1.06196 1.70666 1.18771 0.91038 0.80346 0.96094 1.21722 1.36972 1.06564 0.92978 0.93030 1.25871 0.94771 0.96378 1.02109 1.70055 1.38863 1.14863 1.33011 0.85342 0.77911 0.78436 0.78963 1.19246 1.19135 1.20715 1.21334 0.87826 0.86807 0.75732 1.90601 1.16586 1.87754 1.52872 1.22929 0.96433 0.87429 0.98381 0.85842 1.22453 1.02818 0.97320 0.93355 1.22406 0.99314 0.94684 0.98232 0.93180 1.21287 0.98650 0.94046 0.99577 1.21561 0.99518 0.97343 0.97233 1.21467 1.01175 0.97070 0.94972 1.21452 0.97495 0.95425 1.00677 1.22517 1.00206 0.91153 0.90105 0.88170 1.63146 1.07880 1.03099 1.54998 0.90764 0.91341 0.88894 0.95620 0.98600 0.92337 0.92733 0.86912 0.90045 0.91403 0.90106 0.93159 0.90690 0.90883 0.91069 0.93145 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.11 127.77 1.29 3.59 16 2 N -0.60 -26.41 2.86 -851.16 -2.43 -28.84 16 3 C 0.26 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.45 5.46 84.66 0.46 0.91 16 7 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 8 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 C 0.49 21.49 6.74 87.66 0.59 22.08 16 13 O -0.60 -32.16 15.21 -3.03 -0.05 -32.20 16 14 C 0.06 1.87 3.03 44.43 0.13 2.00 16 15 H 0.12 3.26 6.34 -2.39 -0.02 3.25 16 16 C -0.12 -2.84 6.06 31.26 0.19 -2.65 16 17 C -0.13 -2.74 2.54 -10.51 -0.03 -2.77 16 18 H 0.05 1.34 8.07 -2.38 -0.02 1.32 16 19 C -0.10 -1.47 5.61 30.34 0.17 -1.30 16 20 C -0.12 -1.62 5.86 30.70 0.18 -1.44 16 21 C -0.11 -1.50 5.85 30.70 0.18 -1.32 16 22 C -0.11 -2.19 5.87 30.39 0.18 -2.01 16 23 C 0.07 1.57 2.65 45.31 0.12 1.69 16 24 H 0.10 1.97 8.02 -2.38 -0.02 1.95 16 25 N -0.66 -20.57 7.33 -463.62 -3.40 -23.97 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.09 2.18 5.96 -2.39 -0.01 2.16 16 29 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 30 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.05 1.50 7.71 -2.39 -0.02 1.48 16 33 H 0.11 1.88 8.06 -2.39 -0.02 1.86 16 34 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.05 1.11 8.09 -2.39 -0.02 1.10 16 42 H 0.34 12.37 7.30 -89.69 -0.65 11.72 16 Total: -1.00 -74.38 328.13 0.92 -73.46 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.34 Total: 18.83 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.15 Total: 1.57 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -5.55 Total: -109.58 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.38 0.92 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.391 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds