Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09002 * 109.91907 * 319.29535 * 14 12 2 16 16 C 1.55335 * 109.92862 * 80.42753 * 14 12 2 17 17 C 1.53640 * 101.84798 * 141.89772 * 16 14 12 18 18 H 1.09003 * 111.07244 * 78.33921 * 17 16 14 19 19 C 1.51916 * 115.26929 * 206.40444 * 17 16 14 20 20 C 1.53705 * 107.28526 * 174.98596 * 19 17 16 21 21 C 1.52570 * 111.49290 * 301.89661 * 20 19 17 22 22 C 1.53770 * 111.38204 * 54.84063 * 21 20 19 23 23 C 1.51439 * 107.35143 * 302.71135 * 22 21 20 24 24 H 1.08997 * 109.25615 * 305.95311 * 23 22 21 25 25 N 1.46287 * 117.56702 * 181.33443 * 23 22 21 26 26 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 27 27 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 28 28 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 29 29 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 30 30 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09002 * 110.95593 * 260.03239 * 16 14 12 33 33 H 1.08999 * 110.95459 * 23.72256 * 16 14 12 34 34 H 1.08994 * 109.89918 * 294.43744 * 19 17 16 35 35 H 1.09002 * 109.89223 * 55.54564 * 19 17 16 36 36 H 1.08998 * 109.07763 * 181.37367 * 20 19 17 37 37 H 1.09000 * 109.07377 * 62.41309 * 20 19 17 38 38 H 1.08996 * 109.09933 * 294.35167 * 21 20 19 39 39 H 1.09003 * 109.09865 * 175.32962 * 21 20 19 40 40 H 1.09004 * 109.88457 * 183.25326 * 22 21 20 41 41 H 1.09002 * 109.94587 * 62.20946 * 22 21 20 42 42 H 1.00902 * 111.09528 * 89.36179 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 4.1796 4.7035 3.4339 10 1 2.1392 3.5947 4.1336 11 1 4.2397 2.3829 4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.5271 -2.4055 0.6682 16 6 0.9097 -2.8090 -1.4404 17 6 1.1074 -4.3319 -1.4899 18 1 0.2997 -4.8489 -0.9719 19 6 1.3419 -4.9107 -2.8747 20 6 1.6403 -6.4083 -2.6992 21 6 2.8489 -6.6353 -1.7962 22 6 2.6740 -5.9345 -0.4387 23 6 2.4473 -4.4631 -0.7160 24 1 3.2586 -4.0854 -1.3383 25 7 2.2819 -3.5750 0.4346 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6085 2.0284 -0.5139 30 1 3.1499 1.1383 -0.5140 31 1 4.0296 4.4443 0.8503 32 1 -0.1398 -2.5477 -1.5754 33 1 1.5323 -2.3103 -2.1832 34 1 0.4501 -4.7795 -3.4875 35 1 2.1918 -4.4158 -3.3446 36 1 1.8378 -6.8491 -3.6763 37 1 0.7703 -6.8957 -2.2592 38 1 3.7397 -6.2439 -2.2875 39 1 2.9750 -7.7055 -1.6314 40 1 3.5731 -6.0638 0.1638 41 1 1.8136 -6.3497 0.0860 42 1 3.1716 -3.2156 0.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = -47.996484 kcal Electronic energy + Delta-G solvation = -21067.156209 eV Core-core repulsion = 18046.089908 eV Total energy + Delta-G solvation = -3021.066301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40011 -38.49692 -35.22936 -34.76586 -32.62482 -31.87334 -29.31906 -28.46226 -27.44046 -25.81948 -23.90492 -22.24214 -21.35211 -20.92999 -19.97570 -18.33968 -16.79553 -16.52904 -15.94609 -15.27397 -15.05257 -14.65947 -14.48412 -14.19551 -14.13957 -13.36476 -13.08305 -12.76858 -12.54500 -12.34296 -12.16432 -12.02338 -11.80479 -11.70567 -11.47872 -11.26231 -11.11459 -10.92545 -10.89959 -10.66792 -10.55950 -10.54012 -10.16532 -9.91646 -9.65999 -9.08157 -8.44076 -8.24577 -7.68221 -6.05020 -4.09959 3.28133 3.32452 3.36440 3.41025 3.90721 4.15060 4.44435 4.50922 4.58199 4.82121 4.93720 4.98454 5.08585 5.26814 5.31145 5.31736 5.35974 5.41172 5.44171 5.56245 5.67524 5.73427 5.81008 5.84465 5.89888 5.96760 5.97393 6.03236 6.11515 6.19291 6.21431 6.24143 6.40186 6.91254 7.05618 7.40652 7.49484 7.57672 7.90954 8.22112 8.37434 8.87004 9.03033 9.55126 11.03099 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.004266 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.214907 B = 6561.408936 C = 6847.988538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.491 3.509 13 O -0.546 6.546 14 C 0.055 3.945 15 H 0.103 0.897 16 C -0.119 4.119 17 C -0.094 4.094 18 H 0.086 0.914 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.100 4.100 23 C 0.070 3.930 24 H 0.043 0.957 25 N -0.656 5.656 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 -17.662 -6.345 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.327 5.327 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.276 3.724 13 O -0.424 6.424 14 C -0.058 4.058 15 H 0.121 0.879 16 C -0.158 4.158 17 C -0.113 4.113 18 H 0.105 0.895 19 C -0.147 4.147 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.138 4.138 23 C -0.040 4.040 24 H 0.062 0.938 25 N -0.289 5.289 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.524 -17.831 -6.032 20.272 hybrid contribution 0.739 1.098 0.460 1.401 sum -6.785 -16.733 -5.573 18.897 Atomic orbital electron populations 1.21710 0.81344 1.02749 1.00490 1.48135 1.06258 1.07794 1.70510 1.19303 0.92502 0.78112 0.97569 1.21392 1.36668 1.06321 0.92230 0.92472 1.24941 0.95294 0.96347 0.97504 1.69927 1.38344 1.14344 1.30827 0.86541 0.78394 0.77811 0.84587 1.21159 1.20202 1.20145 1.20838 0.88337 0.85848 0.77356 1.90644 1.13937 1.86883 1.50958 1.22768 0.96840 0.89220 0.96974 0.87930 1.22532 1.01949 0.95984 0.95318 1.22076 0.97907 0.95015 0.96345 0.89526 1.21440 1.01585 0.95538 0.96100 1.21523 0.98385 0.96176 0.99398 1.21544 0.98339 1.00121 0.95578 1.21247 1.02144 0.93758 0.96662 1.21984 0.96884 0.93821 0.91321 0.93842 1.62100 1.19573 1.15042 1.32201 0.93638 0.92157 0.90688 0.94990 0.93959 0.92653 0.90216 0.90942 0.91652 0.91693 0.92192 0.92099 0.92201 0.91920 0.91829 0.91300 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.07 59.85 0.60 1.89 16 2 N -0.60 -12.75 2.86 -182.95 -0.52 -13.27 16 3 C 0.24 6.48 5.16 -5.20 -0.03 6.45 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.49 10.34 6.77 -10.99 -0.07 10.26 16 13 O -0.55 -13.82 15.21 5.56 0.08 -13.74 16 14 C 0.06 0.87 3.10 -66.67 -0.21 0.67 16 15 H 0.10 1.51 6.37 -51.93 -0.33 1.17 16 16 C -0.12 -1.54 5.82 -25.16 -0.15 -1.68 16 17 C -0.09 -1.07 2.63 -89.63 -0.24 -1.31 16 18 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 19 C -0.11 -1.04 5.62 -26.92 -0.15 -1.19 16 20 C -0.12 -0.99 5.84 -26.59 -0.16 -1.14 16 21 C -0.12 -1.06 5.84 -26.55 -0.16 -1.22 16 22 C -0.10 -1.09 5.95 -27.12 -0.16 -1.25 16 23 C 0.07 0.93 2.64 -67.62 -0.18 0.75 16 24 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 25 N -0.66 -10.36 7.31 -98.40 -0.72 -11.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.03 0.85 8.07 -51.92 -0.42 0.43 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.68 7.99 -51.93 -0.41 0.26 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.35 6.41 7.25 -39.29 -0.28 6.13 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.33 328.22 -8.96 -41.29 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.15 Total: 2.48 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.31 Total: -1.59 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.51 Total: -50.47 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.33 -8.96 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.704 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds