Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 120.00078 * 2 1 4 4 C 1.50694 * 109.47115 * 90.00278 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.34777 * 119.99744 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09002 * 109.91907 * 319.29535 * 14 12 2 16 16 C 1.55335 * 109.92862 * 80.42753 * 14 12 2 17 17 C 1.53640 * 101.84798 * 141.89772 * 16 14 12 18 18 H 1.09003 * 111.07244 * 78.33921 * 17 16 14 19 19 C 1.51916 * 115.26929 * 206.40444 * 17 16 14 20 20 C 1.53705 * 107.28526 * 174.98596 * 19 17 16 21 21 C 1.52570 * 111.49290 * 301.89661 * 20 19 17 22 22 C 1.53770 * 111.38204 * 54.84063 * 21 20 19 23 23 C 1.51439 * 107.35143 * 302.71135 * 22 21 20 24 24 H 1.08997 * 109.25615 * 305.95311 * 23 22 21 25 25 N 1.46287 * 117.56702 * 181.33443 * 23 22 21 26 26 H 1.09000 * 109.47436 * 89.99632 * 1 2 3 27 27 H 1.09000 * 109.47148 * 210.00501 * 1 2 3 28 28 H 1.09004 * 109.46943 * 329.99756 * 1 2 3 29 29 H 1.09007 * 109.47078 * 329.99917 * 3 2 1 30 30 H 1.09003 * 109.46733 * 210.00639 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09002 * 110.95593 * 260.03239 * 16 14 12 33 33 H 1.08999 * 110.95459 * 23.72256 * 16 14 12 34 34 H 1.08994 * 109.89918 * 294.43744 * 19 17 16 35 35 H 1.09002 * 109.89223 * 55.54564 * 19 17 16 36 36 H 1.08998 * 109.07763 * 181.37367 * 20 19 17 37 37 H 1.09000 * 109.07377 * 62.41309 * 20 19 17 38 38 H 1.08996 * 109.09933 * 294.35167 * 21 20 19 39 39 H 1.09003 * 109.09865 * 175.32962 * 21 20 19 40 40 H 1.09004 * 109.88457 * 183.25326 * 22 21 20 41 41 H 1.09002 * 109.94587 * 62.20946 * 22 21 20 42 42 H 1.00902 * 111.09528 * 89.36179 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0976 1.0961 2.2417 6 6 3.1262 2.8779 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4369 3.4175 3.4339 9 1 4.1796 4.7035 3.4339 10 1 2.1392 3.5947 4.1336 11 1 4.2397 2.3829 4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.5271 -2.4055 0.6682 16 6 0.9097 -2.8090 -1.4404 17 6 1.1074 -4.3319 -1.4899 18 1 0.2997 -4.8489 -0.9719 19 6 1.3419 -4.9107 -2.8747 20 6 1.6403 -6.4083 -2.6992 21 6 2.8489 -6.6353 -1.7962 22 6 2.6740 -5.9345 -0.4387 23 6 2.4473 -4.4631 -0.7160 24 1 3.2586 -4.0854 -1.3383 25 7 2.2819 -3.5750 0.4346 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6085 2.0284 -0.5139 30 1 3.1499 1.1383 -0.5140 31 1 4.0296 4.4443 0.8503 32 1 -0.1398 -2.5477 -1.5754 33 1 1.5323 -2.3103 -2.1832 34 1 0.4501 -4.7795 -3.4875 35 1 2.1918 -4.4158 -3.3446 36 1 1.8378 -6.8491 -3.6763 37 1 0.7703 -6.8957 -2.2592 38 1 3.7397 -6.2439 -2.2875 39 1 2.9750 -7.7055 -1.6314 40 1 3.5731 -6.0638 0.1638 41 1 1.8136 -6.3497 0.0860 42 1 3.1716 -3.2156 0.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = -70.336090 kcal Electronic energy + Delta-G solvation = -21068.124927 eV Core-core repulsion = 18046.089908 eV Total energy + Delta-G solvation = -3022.035019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65313 -39.89239 -36.76453 -36.08783 -34.74595 -32.82827 -30.71575 -29.62111 -28.92235 -27.37182 -25.56636 -23.66307 -22.29964 -21.95754 -20.96366 -19.83972 -18.73909 -18.23853 -17.43224 -16.78235 -16.37504 -16.12920 -15.74627 -15.38717 -15.12747 -14.60214 -14.55094 -14.11812 -13.88031 -13.74521 -13.51410 -13.40624 -13.15902 -12.98659 -12.83310 -12.69875 -12.61823 -12.41841 -12.22817 -12.10242 -11.84046 -11.75453 -11.41861 -11.37111 -10.78340 -10.71675 -10.67566 -9.55618 -9.48759 -8.25943 -6.41304 1.34591 1.39190 1.46431 1.68318 2.25988 2.40710 3.03232 3.03682 3.52899 3.54691 3.70766 3.89463 4.09435 4.15614 4.25276 4.41339 4.45464 4.46903 4.57112 4.58491 4.63469 4.68828 4.82791 4.87320 4.93372 4.96009 4.99878 5.07924 5.17156 5.21317 5.27119 5.29588 5.34503 5.39728 5.50787 5.57084 5.76972 5.80222 6.01653 6.18645 6.64110 6.71847 7.22195 7.37764 8.81133 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.004266 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.214907 B = 6561.408936 C = 6847.988538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.277 1.277 10 H -0.258 1.258 11 H -0.279 1.279 12 C 0.481 3.519 13 O -0.602 6.602 14 C 0.064 3.936 15 H 0.126 0.874 16 C -0.115 4.115 17 C -0.083 4.083 18 H 0.105 0.895 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.096 4.096 23 C 0.063 3.937 24 H 0.015 0.985 25 N -0.659 5.659 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.025 0.975 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -19.432 -5.952 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.332 5.332 3 C 0.137 3.863 4 C -0.585 4.585 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.202 1.202 10 H -0.183 1.183 11 H -0.204 1.204 12 C 0.269 3.731 13 O -0.484 6.484 14 C -0.048 4.048 15 H 0.143 0.857 16 C -0.153 4.153 17 C -0.101 4.101 18 H 0.123 0.877 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.134 4.134 23 C -0.047 4.047 24 H 0.033 0.967 25 N -0.290 5.290 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.091 -19.625 -5.653 22.780 hybrid contribution 1.546 1.647 0.296 2.278 sum -8.546 -17.977 -5.357 20.613 Atomic orbital electron populations 1.22034 0.77635 1.04145 1.02881 1.48159 1.08562 1.06214 1.70290 1.18767 0.90984 0.80436 0.96098 1.21664 1.37171 1.06673 0.92943 0.92921 1.25881 0.94750 0.96333 1.02144 1.70046 1.38792 1.14780 1.33169 0.85449 0.78935 0.77352 0.78969 1.20169 1.18277 1.20443 1.21885 0.88051 0.87361 0.75782 1.90607 1.16689 1.87826 1.53295 1.22901 0.96446 0.85915 0.99576 0.85700 1.22584 1.03282 0.97066 0.92411 1.22101 0.96848 0.93936 0.97250 0.87693 1.21454 1.01834 0.96229 0.95042 1.21517 0.98380 0.95230 1.00018 1.21552 0.98510 1.00849 0.94493 1.21249 1.02144 0.92104 0.97894 1.22162 0.97486 0.94650 0.90409 0.96728 1.62262 1.18538 1.14977 1.33194 0.90672 0.88710 0.91348 0.95663 0.98780 0.92319 0.86818 0.93120 0.89709 0.93358 0.90833 0.90644 0.93288 0.90110 0.92733 0.90283 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 10.07 127.77 1.29 3.52 16 2 N -0.60 -26.12 2.86 -851.12 -2.43 -28.56 16 3 C 0.26 14.33 5.16 85.63 0.44 14.77 16 4 C -0.55 -32.23 9.39 25.60 0.24 -31.99 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.47 5.46 84.66 0.46 0.93 16 7 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.48 20.79 6.77 87.66 0.59 21.38 16 13 O -0.60 -32.40 15.21 -3.03 -0.05 -32.45 16 14 C 0.06 1.97 3.10 44.64 0.14 2.11 16 15 H 0.13 3.28 6.37 -2.39 -0.02 3.26 16 16 C -0.11 -2.73 5.82 31.61 0.18 -2.54 16 17 C -0.08 -1.66 2.63 -10.15 -0.03 -1.69 16 18 H 0.10 1.81 8.13 -2.39 -0.02 1.79 16 19 C -0.11 -1.80 5.62 30.47 0.17 -1.63 16 20 C -0.11 -1.55 5.84 30.69 0.18 -1.38 16 21 C -0.12 -1.87 5.84 30.71 0.18 -1.69 16 22 C -0.10 -1.96 5.95 30.34 0.18 -1.78 16 23 C 0.06 1.64 2.64 45.31 0.12 1.76 16 24 H 0.01 0.46 7.90 -2.39 -0.02 0.44 16 25 N -0.66 -20.76 7.31 -465.25 -3.40 -24.16 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 2.16 5.97 -2.39 -0.01 2.15 16 28 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 29 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 30 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.44 7.86 -2.39 -0.02 1.42 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.97 7.99 -2.39 -0.02 0.95 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.34 12.78 7.25 -89.69 -0.65 12.13 16 Total: -1.00 -74.39 328.22 0.92 -73.46 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.34 Total: 19.02 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.15 Total: 1.78 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.55 Total: -109.47 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.39 0.92 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.126 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds