Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 N 1.46894 * 109.47050 * 120.00093 * 2 1 3 5 5 C 1.46844 * 110.99742 * 179.97438 * 4 2 1 6 6 C 1.53084 * 109.51739 * 174.28049 * 5 4 2 7 7 H 1.08998 * 109.60287 * 179.97438 * 6 5 4 8 8 C 1.53083 * 109.29391 * 300.06282 * 6 5 4 9 9 C 1.52995 * 109.42100 * 58.79916 * 8 6 5 10 10 C 1.52985 * 109.57312 * 59.72213 * 9 8 6 11 11 C 1.53084 * 109.45454 * 300.29574 * 10 9 8 12 12 H 1.09002 * 109.60710 * 180.51802 * 11 10 9 13 13 C 1.47873 * 110.83807 * 55.47393 * 4 2 1 14 14 C 1.53187 * 109.17034 * 60.45552 * 11 10 9 15 15 N 1.46901 * 109.56751 * 58.17516 * 14 11 10 16 16 C 1.46897 * 111.00294 * 154.99900 * 15 14 11 17 17 C 1.50695 * 109.47076 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00347 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99791 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99878 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47065 * 89.99826 * 21 19 17 23 23 H 1.48502 * 109.46772 * 209.99784 * 21 19 17 24 24 H 1.48496 * 109.47266 * 329.99754 * 21 19 17 25 25 H 1.09005 * 109.46999 * 299.99982 * 1 2 3 26 26 H 1.08999 * 109.47148 * 59.99765 * 1 2 3 27 27 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46808 * 240.00771 * 2 1 3 29 29 H 1.09002 * 109.46673 * 60.00124 * 3 2 1 30 30 H 1.08999 * 109.46776 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47310 * 300.00135 * 3 2 1 32 32 H 1.08999 * 109.46372 * 54.26593 * 5 4 2 33 33 H 1.08994 * 109.45618 * 294.28813 * 5 4 2 34 34 H 1.08998 * 109.48435 * 298.81193 * 8 6 5 35 35 H 1.09000 * 109.48094 * 178.78257 * 8 6 5 36 36 H 1.08993 * 109.45278 * 299.68863 * 9 8 6 37 37 H 1.09008 * 109.45167 * 179.75083 * 9 8 6 38 38 H 1.08999 * 109.47757 * 180.29845 * 10 9 8 39 39 H 1.09006 * 109.47908 * 60.28829 * 10 9 8 40 40 H 1.09000 * 109.73906 * 65.65427 * 13 4 2 41 41 H 1.08997 * 109.74138 * 305.33256 * 13 4 2 42 42 H 1.08996 * 109.56617 * 178.52799 * 14 11 10 43 43 H 1.00898 * 111.00207 * 278.95830 * 15 14 11 44 44 H 1.09002 * 109.47152 * 300.00892 * 16 15 14 45 45 H 1.09000 * 109.46775 * 60.00385 * 16 15 14 46 46 H 0.96999 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4876 -0.7126 1.2330 6 6 3.9606 -1.3125 2.5595 7 1 5.0502 -1.3285 2.5858 8 6 3.4324 -0.4608 3.7167 9 6 1.9041 -0.4183 3.6608 10 6 1.3475 -1.8390 3.7711 11 6 1.8821 -2.6873 2.6143 12 1 1.4797 -3.6978 2.6853 13 6 1.4565 -2.0571 1.2857 14 6 3.4112 -2.7363 2.6912 15 7 3.8210 -3.2931 3.9874 16 6 5.1557 -3.9007 3.9012 17 6 5.5407 -4.4602 5.2464 18 1 4.8617 -4.3735 6.0818 19 6 6.7600 -5.0827 5.4107 20 7 7.0962 -5.5706 6.5848 21 14 7.9347 -5.2319 3.9660 22 1 8.8258 -4.0447 3.9280 23 1 8.7538 -6.4611 4.1191 24 1 7.1582 -5.3087 2.7026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.8670 0.3049 1.1386 33 1 3.8614 -1.3176 0.4070 34 1 3.8275 0.5516 3.6329 35 1 3.7495 -0.8975 4.6637 36 1 1.5876 0.0233 2.7159 37 1 1.5272 0.1845 4.4872 38 1 0.2589 -1.8074 3.7258 39 1 1.6591 -2.2789 4.7185 40 1 1.8302 -2.6624 0.4599 41 1 0.3686 -2.0100 1.2382 42 1 3.7974 -3.3605 1.8854 43 1 3.7901 -2.5890 4.7095 44 1 5.1424 -4.7037 3.1643 45 1 5.8805 -3.1440 3.6010 46 1 7.9541 -6.0082 6.7006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040783009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = 9.663474 kcal Electronic energy + Delta-G solvation = -22231.343081 eV Core-core repulsion = 19348.610198 eV Total energy + Delta-G solvation = -2882.732883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77160 -36.90996 -34.10029 -32.39174 -32.11430 -31.79411 -29.14835 -27.83640 -26.50997 -25.39401 -23.09612 -21.85138 -21.30704 -20.88803 -19.98853 -17.86372 -17.09187 -16.43604 -15.30721 -14.81403 -14.70425 -14.55732 -14.17427 -13.88367 -13.61861 -13.10739 -13.01760 -12.64252 -12.53322 -12.41965 -12.24808 -12.10830 -11.85056 -11.63470 -11.45651 -11.30307 -11.22842 -11.13814 -10.72745 -10.61595 -10.57411 -10.30600 -10.14238 -9.78479 -9.64814 -9.48995 -9.19388 -8.57509 -7.72981 -7.33282 -6.03536 -4.00732 3.28996 3.36514 3.39431 3.78639 4.43772 4.70960 4.78175 4.84766 4.97410 5.08387 5.17101 5.28753 5.31240 5.36137 5.42122 5.46289 5.52322 5.60174 5.63934 5.70880 5.73310 5.73908 5.78735 5.90284 5.93621 6.02386 6.03285 6.11992 6.17087 6.20690 6.24470 6.45586 6.58262 6.69670 6.71515 6.74415 6.85155 7.05228 7.08494 7.12512 7.28626 7.66653 7.98262 8.44716 8.70126 9.05267 9.59064 11.09975 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.005007 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.500177 B = 5590.390966 C = 5847.369862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.146 4.146 4 N -0.511 5.511 5 C 0.061 3.939 6 C -0.117 4.117 7 H 0.070 0.930 8 C -0.102 4.102 9 C -0.150 4.150 10 C -0.099 4.099 11 C -0.073 4.073 12 H 0.076 0.924 13 C 0.054 3.946 14 C 0.095 3.905 15 N -0.673 5.673 16 C 0.165 3.835 17 C -0.513 4.513 18 H 0.078 0.922 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.133 0.867 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.339 0.661 44 H 0.023 0.977 45 H -0.023 1.023 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 13.212 -14.128 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.204 4.204 4 N -0.236 5.236 5 C -0.067 4.067 6 C -0.137 4.137 7 H 0.089 0.911 8 C -0.140 4.140 9 C -0.187 4.187 10 C -0.136 4.136 11 C -0.092 4.092 12 H 0.094 0.906 13 C -0.073 4.073 14 C -0.016 4.016 15 N -0.304 5.304 16 C 0.037 3.963 17 C -0.552 4.552 18 H 0.096 0.904 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.193 1.193 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.159 0.841 44 H 0.041 0.959 45 H -0.005 1.005 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.521 12.751 -13.708 22.523 hybrid contribution 1.804 0.059 -1.391 2.279 sum -10.717 12.810 -15.099 22.515 Atomic orbital electron populations 1.21920 0.94424 1.02061 1.02039 1.21682 0.95659 0.95201 0.91580 1.21896 1.01122 0.95349 1.01990 1.62763 1.08107 1.17170 1.35550 1.22153 0.87140 1.00550 0.96864 1.21924 0.99715 0.97352 0.94735 0.91139 1.21390 0.97037 0.98255 0.97297 1.22371 0.94508 0.96965 1.04888 1.21332 0.98456 0.95692 0.98145 1.21195 0.95590 0.98770 0.93683 0.90561 1.22472 0.99756 0.87842 0.97253 1.21560 0.94231 0.91944 0.93877 1.60608 1.29994 1.35783 1.04061 1.20005 0.84802 0.93288 0.98238 1.21080 1.02393 1.36442 0.95244 0.90374 1.24902 0.97765 0.95138 0.95511 1.69900 1.22407 1.39059 1.22673 0.86827 0.81302 0.77695 0.83682 1.20404 1.21207 1.19268 0.91660 0.92574 0.92383 0.94592 0.91685 0.92541 0.92579 0.90613 0.95239 0.93055 0.92476 0.85057 0.94772 0.93422 0.91894 0.95056 0.90194 0.91833 0.84052 0.95917 1.00490 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.83 37.16 0.33 -0.86 16 2 C 0.07 0.62 2.68 -67.71 -0.18 0.44 16 3 C -0.15 -1.22 8.97 37.16 0.33 -0.89 16 4 N -0.51 -5.69 1.00 -225.76 -0.23 -5.92 16 5 C 0.06 0.76 4.64 -3.81 -0.02 0.74 16 6 C -0.12 -1.76 2.87 -90.44 -0.26 -2.02 16 7 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 8 C -0.10 -1.49 5.21 -26.69 -0.14 -1.63 16 9 C -0.15 -2.01 5.57 -26.74 -0.15 -2.15 16 10 C -0.10 -1.39 5.21 -26.70 -0.14 -1.53 16 11 C -0.07 -1.05 2.97 -90.44 -0.27 -1.32 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 13 C 0.05 0.64 4.61 -3.24 -0.01 0.63 16 14 C 0.10 1.62 2.24 -67.52 -0.15 1.46 16 15 N -0.67 -14.07 5.69 -107.79 -0.61 -14.68 16 16 C 0.16 4.06 4.31 -4.98 -0.02 4.04 16 17 C -0.51 -14.91 9.87 -34.44 -0.34 -15.25 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 21 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 6.21 -51.93 -0.32 0.15 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 6.28 -51.93 -0.33 0.16 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.87 6.01 -51.93 -0.31 0.55 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.94 6.14 -51.93 -0.32 0.62 16 36 H 0.13 1.67 4.75 -62.76 -0.30 1.37 16 37 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.84 5.95 -51.93 -0.31 0.53 16 42 H 0.06 1.15 7.81 -51.93 -0.41 0.74 16 43 H 0.34 7.04 5.37 -39.29 -0.21 6.83 16 44 H 0.02 0.58 7.12 -51.93 -0.37 0.21 16 45 H -0.02 -0.55 6.96 -51.93 -0.36 -0.91 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -29.83 325.54 -9.18 -39.01 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.24 Total: 3.10 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.12 Total: -16.42 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.07 Total: -47.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.83 -9.18 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040783009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.676 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds