Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 N 1.46894 * 109.47050 * 120.00093 * 2 1 3 5 5 C 1.46844 * 110.99742 * 179.97438 * 4 2 1 6 6 C 1.53084 * 109.51739 * 174.28049 * 5 4 2 7 7 H 1.08998 * 109.60287 * 179.97438 * 6 5 4 8 8 C 1.53083 * 109.29391 * 300.06282 * 6 5 4 9 9 C 1.52995 * 109.42100 * 58.79916 * 8 6 5 10 10 C 1.52985 * 109.57312 * 59.72213 * 9 8 6 11 11 C 1.53084 * 109.45454 * 300.29574 * 10 9 8 12 12 H 1.09002 * 109.60710 * 180.51802 * 11 10 9 13 13 C 1.47873 * 110.83807 * 55.47393 * 4 2 1 14 14 C 1.53187 * 109.17034 * 60.45552 * 11 10 9 15 15 N 1.46901 * 109.56751 * 58.17516 * 14 11 10 16 16 C 1.46897 * 111.00294 * 154.99900 * 15 14 11 17 17 C 1.50695 * 109.47076 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00347 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99791 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99878 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47065 * 89.99826 * 21 19 17 23 23 H 1.48502 * 109.46772 * 209.99784 * 21 19 17 24 24 H 1.48496 * 109.47266 * 329.99754 * 21 19 17 25 25 H 1.09005 * 109.46999 * 299.99982 * 1 2 3 26 26 H 1.08999 * 109.47148 * 59.99765 * 1 2 3 27 27 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46808 * 240.00771 * 2 1 3 29 29 H 1.09002 * 109.46673 * 60.00124 * 3 2 1 30 30 H 1.08999 * 109.46776 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47310 * 300.00135 * 3 2 1 32 32 H 1.08999 * 109.46372 * 54.26593 * 5 4 2 33 33 H 1.08994 * 109.45618 * 294.28813 * 5 4 2 34 34 H 1.08998 * 109.48435 * 298.81193 * 8 6 5 35 35 H 1.09000 * 109.48094 * 178.78257 * 8 6 5 36 36 H 1.08993 * 109.45278 * 299.68863 * 9 8 6 37 37 H 1.09008 * 109.45167 * 179.75083 * 9 8 6 38 38 H 1.08999 * 109.47757 * 180.29845 * 10 9 8 39 39 H 1.09006 * 109.47908 * 60.28829 * 10 9 8 40 40 H 1.09000 * 109.73906 * 65.65427 * 13 4 2 41 41 H 1.08997 * 109.74138 * 305.33256 * 13 4 2 42 42 H 1.08996 * 109.56617 * 178.52799 * 14 11 10 43 43 H 1.00898 * 111.00207 * 278.95830 * 15 14 11 44 44 H 1.09002 * 109.47152 * 300.00892 * 16 15 14 45 45 H 1.09000 * 109.46775 * 60.00385 * 16 15 14 46 46 H 0.96999 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4876 -0.7126 1.2330 6 6 3.9606 -1.3125 2.5595 7 1 5.0502 -1.3285 2.5858 8 6 3.4324 -0.4608 3.7167 9 6 1.9041 -0.4183 3.6608 10 6 1.3475 -1.8390 3.7711 11 6 1.8821 -2.6873 2.6143 12 1 1.4797 -3.6978 2.6853 13 6 1.4565 -2.0571 1.2857 14 6 3.4112 -2.7363 2.6912 15 7 3.8210 -3.2931 3.9874 16 6 5.1557 -3.9007 3.9012 17 6 5.5407 -4.4602 5.2464 18 1 4.8617 -4.3735 6.0818 19 6 6.7600 -5.0827 5.4107 20 7 7.0962 -5.5706 6.5848 21 14 7.9347 -5.2319 3.9660 22 1 8.8258 -4.0447 3.9280 23 1 8.7538 -6.4611 4.1191 24 1 7.1582 -5.3087 2.7026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.8670 0.3049 1.1386 33 1 3.8614 -1.3176 0.4070 34 1 3.8275 0.5516 3.6329 35 1 3.7495 -0.8975 4.6637 36 1 1.5876 0.0233 2.7159 37 1 1.5272 0.1845 4.4872 38 1 0.2589 -1.8074 3.7258 39 1 1.6591 -2.2789 4.7185 40 1 1.8302 -2.6624 0.4599 41 1 0.3686 -2.0100 1.2382 42 1 3.7974 -3.3605 1.8854 43 1 3.7901 -2.5890 4.7095 44 1 5.1424 -4.7037 3.1643 45 1 5.8805 -3.1440 3.6010 46 1 7.9541 -6.0082 6.7006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040783009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = -7.776521 kcal Electronic energy + Delta-G solvation = -22232.099336 eV Core-core repulsion = 19348.610198 eV Total energy + Delta-G solvation = -2883.489138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90405 -37.97853 -35.79348 -34.18010 -33.48696 -32.72923 -30.65009 -28.57676 -28.23896 -26.35855 -24.48284 -23.15355 -22.80187 -22.21392 -20.84278 -19.30451 -18.74313 -17.77552 -16.79376 -16.17606 -15.92850 -15.59982 -15.42700 -15.15660 -15.09367 -14.55801 -14.39863 -14.03595 -13.85046 -13.61315 -13.35074 -13.07698 -12.93962 -12.88067 -12.70763 -12.61634 -12.40653 -12.22654 -11.95454 -11.92337 -11.78242 -11.74390 -11.54415 -11.41842 -11.15744 -10.90733 -10.79911 -10.68060 -9.01776 -8.68219 -8.32712 -6.36807 1.30254 1.32590 1.43968 2.30894 2.89397 3.01078 3.47831 3.73396 3.81769 3.97917 4.14267 4.16306 4.24749 4.37691 4.43525 4.45462 4.51840 4.61133 4.64754 4.74051 4.76635 4.81189 4.85407 4.88746 4.91492 4.95471 5.01156 5.04256 5.09026 5.12021 5.19148 5.23775 5.40277 5.43357 5.48008 5.50056 5.55505 5.57201 5.58886 5.98847 6.12852 6.14240 6.27528 6.58844 6.66442 6.78522 7.28307 8.84326 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.005007 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.500177 B = 5590.390966 C = 5847.369862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.144 4.144 4 N -0.511 5.511 5 C 0.069 3.931 6 C -0.114 4.114 7 H 0.051 0.949 8 C -0.100 4.100 9 C -0.142 4.142 10 C -0.096 4.096 11 C -0.070 4.070 12 H 0.065 0.935 13 C 0.062 3.938 14 C 0.092 3.908 15 N -0.682 5.682 16 C 0.179 3.821 17 C -0.527 4.527 18 H 0.035 0.965 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.254 1.254 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.148 0.852 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.337 0.663 44 H 0.018 0.982 45 H -0.019 1.019 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 14.829 -17.013 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 C -0.201 4.201 4 N -0.236 5.236 5 C -0.059 4.059 6 C -0.135 4.135 7 H 0.070 0.930 8 C -0.138 4.138 9 C -0.179 4.179 10 C -0.134 4.134 11 C -0.089 4.089 12 H 0.083 0.917 13 C -0.066 4.066 14 C -0.019 4.019 15 N -0.313 5.313 16 C 0.050 3.950 17 C -0.565 4.565 18 H 0.053 0.947 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.178 1.178 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.165 0.835 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.158 0.842 44 H 0.036 0.964 45 H -0.002 1.002 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.284 14.386 -16.605 25.674 hybrid contribution 1.961 -0.443 -0.413 2.053 sum -11.323 13.943 -17.018 24.744 Atomic orbital electron populations 1.21905 0.93221 1.02278 1.02756 1.21774 0.96563 0.95399 0.90374 1.21884 1.00864 0.94670 1.02698 1.62667 1.07151 1.16718 1.37079 1.22038 0.88094 1.01078 0.94731 1.21827 0.98568 0.96270 0.96786 0.93014 1.21381 0.98166 0.98576 0.95695 1.22371 0.93266 0.96421 1.05841 1.21307 0.99591 0.95943 0.96546 1.21147 0.93349 0.98758 0.95673 0.91677 1.22393 1.00931 0.88047 0.95199 1.21675 0.96215 0.92820 0.91161 1.60541 1.27780 1.36677 1.06320 1.19705 0.86784 0.93169 0.95331 1.21335 1.02077 1.37035 0.96090 0.94704 1.25864 0.99740 0.94477 0.98726 1.70051 1.23341 1.40080 1.25233 0.85655 0.78728 0.78269 0.79886 1.19064 1.20365 1.17807 0.91749 0.91121 0.92397 0.94661 0.91828 0.92924 0.91077 0.89031 0.95412 0.91650 0.95232 0.83528 0.94440 0.91552 0.94780 0.95061 0.88128 0.92964 0.84238 0.96371 1.00155 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.83 71.98 0.64 -1.15 16 2 C 0.07 1.01 2.68 44.92 0.12 1.13 16 3 C -0.14 -1.89 8.97 71.98 0.65 -1.25 16 4 N -0.51 -9.94 1.00 -868.17 -0.87 -10.81 16 5 C 0.07 1.56 4.64 86.34 0.40 1.96 16 6 C -0.11 -3.36 2.87 -10.67 -0.03 -3.39 16 7 H 0.05 1.71 7.56 -2.39 -0.02 1.69 16 8 C -0.10 -2.87 5.21 30.62 0.16 -2.71 16 9 C -0.14 -3.56 5.57 30.59 0.17 -3.39 16 10 C -0.10 -2.63 5.21 30.62 0.16 -2.48 16 11 C -0.07 -1.96 2.97 -10.67 -0.03 -1.99 16 12 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 13 C 0.06 1.31 4.61 86.14 0.40 1.71 16 14 C 0.09 3.11 2.24 45.04 0.10 3.21 16 15 N -0.68 -29.43 5.69 -494.94 -2.82 -32.25 16 16 C 0.18 8.99 4.31 85.56 0.37 9.36 16 17 C -0.53 -31.82 9.87 25.60 0.25 -31.57 16 18 H 0.03 2.33 8.06 -2.91 -0.02 2.31 16 19 C 0.01 0.57 5.47 84.66 0.46 1.03 16 20 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 21 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.73 6.21 -2.39 -0.01 0.71 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.74 6.28 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.83 6.01 -2.39 -0.01 1.81 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.00 6.14 -2.39 -0.01 0.98 16 36 H 0.15 3.29 4.75 -23.77 -0.11 3.18 16 37 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.03 1.12 7.13 -2.38 -0.02 1.10 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 1.78 5.95 -2.39 -0.01 1.76 16 42 H 0.05 1.88 7.81 -2.39 -0.02 1.86 16 43 H 0.34 14.73 5.37 -89.70 -0.48 14.25 16 44 H 0.02 0.93 7.12 -2.39 -0.02 0.92 16 45 H -0.02 -0.94 6.96 -2.39 -0.02 -0.96 16 46 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -66.11 325.54 2.61 -63.50 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.30 Total: 21.98 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.81 Total: -29.52 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.39 Total: -103.31 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -66.11 2.61 -63.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040783009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.724 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds